jgi.p|Nanoce1779_2|564638, mRNA_3776 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564638
Unique NamemRNA_3776
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length441
Alignment locationscaffold_6:1227086..1227526 +

Link to JBrowse

Properties
Property NameValue
TranscriptId564724
TrackFilteredModels2
ProteinId564638
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1227086..1227526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564638gene_3776Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564638mRNA_3776-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3776CDS_3776Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3776 ID=mRNA_3776|Name=jgi.p|Nanoce1779_2|564638|organism=Nannochloropsis oceanica|type=mRNA|length=441bp
ATGGACGGAGGGAGGGAGGGCCTGCAGCAGGGTGTGCAGCAGCCAGAGAC
TCTCAACCACCTTTCCCCTCCCCCCCTCCCCCGCCAGCCGACCCTTTCCG
AGGCCGTCCAGGACGGTAGACAGGAGGCATACCCACAGCCCACGGAGGGA
GGGAAGGAGGGAGGGGAGGTCGTGAGGGAGGAGCCGGCTGAGGGTGGCCG
TGGCTTGAGCTCGAAGGGAGAAAGCTTCGGTGTCTTGTGTGAGGAGGAGG
AGGAGAGGGAGGGCGGGAGGGCTGGCCAGCCCGAGGGGGAGAAGGGAGGA
GGGAGGGAGAGAGGGGGAGAGGAGGGAGGTGAGGAGAAGGGGGCGTACCC
ACAGGTGGTTCTCCGCGAGGGCTGCGGAAAGGAGGCGATAGCAGAGGGAG
GGAGGGAGGGAGGGCGGAATGGAGGGAGGGTAGGTATTTAG
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protein sequence of jgi.p|Nanoce1779_2|564638

>mRNA_3776-protein ID=mRNA_3776-protein|Name=jgi.p|Nanoce1779_2|564638|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MDGGREGLQQGVQQPETLNHLSPPPLPRQPTLSEAVQDGRQEAYPQPTEG
GKEGGEVVREEPAEGGRGLSSKGESFGVLCEEEEEREGGRAGQPEGEKGG
GRERGGEEGGEEKGAYPQVVLREGCGKEAIAEGGREGGRNGGRVGI*
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mRNA from alignment at scaffold_6:1227086..1227526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3776 ID=mRNA_3776|Name=jgi.p|Nanoce1779_2|564638|organism=Nannochloropsis oceanica|type=mRNA|length=441bp|location=Sequence derived from alignment at scaffold_6:1227086..1227526+ (Nannochloropsis oceanica)
ATGGACGGAGGGAGGGAGGGCCTGCAGCAGGGTGTGCAGCAGCCAGAGAC
TCTCAACCACCTTTCCCCTCCCCCCCTCCCCCGCCAGCCGACCCTTTCCG
AGGCCGTCCAGGACGGTAGACAGGAGGCATACCCACAGCCCACGGAGGGA
GGGAAGGAGGGAGGGGAGGTCGTGAGGGAGGAGCCGGCTGAGGGTGGCCG
TGGCTTGAGCTCGAAGGGAGAAAGCTTCGGTGTCTTGTGTGAGGAGGAGG
AGGAGAGGGAGGGCGGGAGGGCTGGCCAGCCCGAGGGGGAGAAGGGAGGA
GGGAGGGAGAGAGGGGGAGAGGAGGGAGGTGAGGAGAAGGGGGCGTACCC
ACAGGTGGTTCTCCGCGAGGGCTGCGGAAAGGAGGCGATAGCAGAGGGAG
GGAGGGAGGGAGGGCGGAATGGAGGGAGGGTAGGTATTTAG
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Coding sequence (CDS) from alignment at scaffold_6:1227086..1227526+

>mRNA_3776 ID=mRNA_3776|Name=jgi.p|Nanoce1779_2|564638|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_6:1227086..1227526+ (Nannochloropsis oceanica)
ATGGACGGAGGGAGGGAGGGCCTGCAGCAGGGTGTGCAGCAGCCAGAGAC
TCTCAACCACCTTTCCCCTCCCCCCCTCCCCCGCCAGCCGACCCTTTCCG
AGGCCGTCCAGGACGGTAGACAGGAGGCATACCCACAGCCCACGGAGGGA
GGGAAGGAGGGAGGGGAGGTCGTGAGGGAGGAGCCGGCTGAGGGTGGCCG
TGGCTTGAGCTCGAAGGGAGAAAGCTTCGGTGTCTTGTGTGAGGAGGAGG
AGGAGAGGGAGGGCGGGAGGGCTGGCCAGCCCGAGGGGGAGAAGGGAGGA
GGGAGGGAGAGAGGGGGAGAGGAGGGAGGTGAGGAGAAGGGGGCGTACCC
ACAGGTGGTTCTCCGCGAGGGCTGCGGAAAGGAGGCGATAGCAGAGGGAG
GGAGGGAGGGAGGGCGGAATGGAGGGAGGGTAGGTATTTAG
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Synonyms
Publications