jgi.p|Nanoce1779_2|373328, mRNA_3775 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|373328
Unique NamemRNA_3775
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1287
Alignment locationscaffold_6:1224335..1225688 +

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Properties
Property NameValue
TranscriptId373414
TrackFilteredModels2
ProteinId373328
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1224335..1225688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373328gene_3775Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373328mRNA_3775-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3775CDS_3775Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3775 ID=mRNA_3775|Name=jgi.p|Nanoce1779_2|373328|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp
GGTGGTTTCAAGGAGGGGGAGATTTATCTGAAAGTGGTGGGAGGGGGAGA
GGGCCGAGGCGGAAGAAAAGGAGGAAGAGTAGGAGATGGCGGGGGTAGCC
AGATCGCTTTTCAGGACACTGCCAAGGGGAGGAGGTCCTCGGGCCGGCTC
CTCCTTCCCTCCCTCCCCCCCTCCTTCTATTGCCCCGGAAGAGGAGAGAG
TGGAAGCGTTCATGGGCAGAAATCCTGCCGCGGCTTGTCCTCCTCTTCTT
TTGGTTGTTGCTCCTCCTGCGCCTTGAGCCCATGGGATCTCGACGGGTGC
GAATTCGGGAGAGAAGGGGAAGGGAGCGCGGCTGCAAGGAGTGCTTGACG
AATGGAGAGGATGAGGGGGGGGGAACAAAGACGGAGGTTGGCAAGAAGGT
GGAAGAGGCAAGAGACCCCGATCCGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGGTGGGGGCCGTCACGATAATCATCCCC
TTGAGAAGAACAAGGAGGAAGCAAGGACAAGAAAGCAGCCACCAACGCAG
GGACATGCAGCCTCACCACCTCCCTCCCTCCCTCCCTCCCTCCTTCTCCC
CCCTCCTGACTCGTCGTCGCCAGCTGCACGAGCAAGACCGCTGCCAAGCG
TCGTGTAGGCCAAGAGCGTTTCCTCCCTCCCTCCCTCACCAATTCAATTA
TATCAGGGAGGAGGAGGGAGAGGCCTTCAAATCCCAATCCCATCGCCCCC
AGACGTCCCACACACATCAGCACCTCCCGCATACGCCACCGCAAATCGTC
CAATTCCCCCCCGTCGTCCTCTATCTCTTCCTCGTCCTCTTCCTCCCCAT
CGTCACTATCGTTGCCGTCGTTGTCTTCCTCCATCTCCTCTTCCTCCTCC
TCCCCGCCGCCATCACCGTCCTCCCTACTTTCCTCCCCCTCCAGTCGATT
CGCATTTCGACTCCCACTCCTGCTCCGCTCTCGCCTTTTACTAATGTAGG
CACGAAGGTAAGGCGCCTCCCCCTCCTTCCCGTCTTCCCTCCCTCCTTCC
CCCCTCAGAGTAGCCGCCAGCCAGGGCACCACCTCAGCCACCACCAATCG
ACGGACCTCCTCATTCCCCTCCTTCCCCCCGCCCTGCTTCTCTTCCTCCC
CCCCGCCATTCTCCTCCTCCTCCTCCTCCGCTGCTAGCAGGAAAACCAAC
CGCAGACACACACGGAAACGCCGCCTGTCCTGCTGCTGCCTGTAAAGCCC
ATGGAGGAAGGGAAGAAGGAAAGGAAGGTGGTTCCGA
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protein sequence of jgi.p|Nanoce1779_2|373328

>mRNA_3775-protein ID=mRNA_3775-protein|Name=jgi.p|Nanoce1779_2|373328|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MGSRRVRIRERRGRERGCKECLTNGEDEGGGTKTEVGKKVEEARDPDPLL
LLLLLLLLLLLLLLVGAVTIIIPLRRTRRKQGQESSHQRRDMQPHHLPPS
LPPSFSPLLTRRRQLHEQDRCQASCRPRAFPPSLPHQFNYIREEEGEAFK
SQSHRPQTSHTHQHLPHTPPQIVQFPPVVLYLFLVLFLPIVTIVAVVVFL
HLLFLLLPAAITVLPTFLPLQSIRISTPTPAPLSPFTNVGTKVRRLPLLP
VFPPSFPPQSSRQPGHHLSHHQSTDLLIPLLPPALLLFLPPAILLLLLLR
C*
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mRNA from alignment at scaffold_6:1224335..1225688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3775 ID=mRNA_3775|Name=jgi.p|Nanoce1779_2|373328|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp|location=Sequence derived from alignment at scaffold_6:1224335..1225688+ (Nannochloropsis oceanica)
GGTGGTTTCAAGGAGGGGGAGATTTATCTGAAAGTGGTGGGAGGGGGAGA
GGGCCGAGGCGGAAGAAAAGGAGGAAGAGTAGGAGATGGCGGGGGTAGCC
AGATCGCTTTTCAGGACACTGCCAAGGGGAGGAGGTCCTCGGGCCGGCTC
CTCCTTCCCTCCCTCCCCCCCTCCTTCTATTGCCCCGGAAGAGGAGAGAG
TGGAAGCGTTCATGGGCAGAAATCCTGCCGCGGCTTGTCCTCCTCTTCTT
TTGGTTGTTGCTCCTCCTGCGCCTTGAGCCCATGGGATCTCGACGGGTGC
GAATTCGGGAGAGAAGGGAGGGAGGGAGGGAGGGAGGGAAAGAAGGATGC
TCTTCATGAGGCTGTCGAAGGCGAAAAGGAGGGAGGAAGGGAGCGCGGCT
GCAAGGAGTGCTTGACGAATGGAGAGGATGAGGGGGGGGGAACAAAGACG
GAGGTTGGCAAGAAGGTGGAAGAGGCAAGAGACCCCGATCCGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGGGGCCG
TCACGATAATCATCCCCTTGAGAAGAACAAGGAGGAAGCAAGGACAAGAA
AGCAGCCACCAACGCAGGGACATGCAGCCTCACCACCTCCCTCCCTCCCT
CCCTCCCTCCTTCTCCCCCCTCCTGACTCGTCGTCGCCAGCTGCACGAGC
AAGACCGCTGCCAAGCGTCGTGTAGGCCAAGAGCGTTTCCTCCCTCCCTC
CCTCACCAATTCAATTATATCAGGGAGGAGGAGGGAGAGGCCTTCAAATC
CCAATCCCATCGCCCCCAGACGTCCCACACACATCAGCACCTCCCGCATA
CGCCACCGCAAATCGTCCAATTCCCCCCCGTCGTCCTCTATCTCTTCCTC
GTCCTCTTCCTCCCCATCGTCACTATCGTTGCCGTCGTTGTCTTCCTCCA
TCTCCTCTTCCTCCTCCTCCCCGCCGCCATCACCGTCCTCCCTACTTTCC
TCCCCCTCCAGTCGATTCGCATTTCGACTCCCACTCCTGCTCCGCTCTCG
CCTTTTACTAATGTAGGCACGAAGGTAAGGCGCCTCCCCCTCCTTCCCGT
CTTCCCTCCCTCCTTCCCCCCTCAGAGTAGCCGCCAGCCAGGGCACCACC
TCAGCCACCACCAATCGACGGACCTCCTCATTCCCCTCCTTCCCCCCGCC
CTGCTTCTCTTCCTCCCCCCCGCCATTCTCCTCCTCCTCCTCCTCCGCTG
CTAGCAGGAAAACCAACCGCAGACACACACGGAAACGCCGCCTGTCCTGC
TGCTGCCTGTAAAGCCCATGGAGGAAGGGAAGAAGGAAAGGAAGGTGGTT
CCGA
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Coding sequence (CDS) from alignment at scaffold_6:1224335..1225688+

>mRNA_3775 ID=mRNA_3775|Name=jgi.p|Nanoce1779_2|373328|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_6:1224335..1225688+ (Nannochloropsis oceanica)
ATGGGATCTCGACGGGTGCGAATTCGGGAGAGAAGGGGAAGGGAGCGCGG
CTGCAAGGAGTGCTTGACGAATGGAGAGGATGAGGGGGGGGGAACAAAGA
CGGAGGTTGGCAAGAAGGTGGAAGAGGCAAGAGACCCCGATCCGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGGGGC
CGTCACGATAATCATCCCCTTGAGAAGAACAAGGAGGAAGCAAGGACAAG
AAAGCAGCCACCAACGCAGGGACATGCAGCCTCACCACCTCCCTCCCTCC
CTCCCTCCCTCCTTCTCCCCCCTCCTGACTCGTCGTCGCCAGCTGCACGA
GCAAGACCGCTGCCAAGCGTCGTGTAGGCCAAGAGCGTTTCCTCCCTCCC
TCCCTCACCAATTCAATTATATCAGGGAGGAGGAGGGAGAGGCCTTCAAA
TCCCAATCCCATCGCCCCCAGACGTCCCACACACATCAGCACCTCCCGCA
TACGCCACCGCAAATCGTCCAATTCCCCCCCGTCGTCCTCTATCTCTTCC
TCGTCCTCTTCCTCCCCATCGTCACTATCGTTGCCGTCGTTGTCTTCCTC
CATCTCCTCTTCCTCCTCCTCCCCGCCGCCATCACCGTCCTCCCTACTTT
CCTCCCCCTCCAGTCGATTCGCATTTCGACTCCCACTCCTGCTCCGCTCT
CGCCTTTTACTAATGTAGGCACGAAGGTAAGGCGCCTCCCCCTCCTTCCC
GTCTTCCCTCCCTCCTTCCCCCCTCAGAGTAGCCGCCAGCCAGGGCACCA
CCTCAGCCACCACCAATCGACGGACCTCCTCATTCCCCTCCTTCCCCCCG
CCCTGCTTCTCTTCCTCCCCCCCGCCATTCTCCTCCTCCTCCTCCTCCGC
TGCTAGATGGGATCTCGACGGGTGCGAATTCGGGAGAGAAGGGGAAGGGA
GCGCGGCTGCAAGGAGTGCTTGACGAATGGAGAGGATGAGGGGGGGGGAA
CAAAGACGGAGGTTGGCAAGAAGGTGGAAGAGGCAAGAGACCCCGATCCG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGT
GGGGGCCGTCACGATAATCATCCCCTTGAGAAGAACAAGGAGGAAGCAAG
GACAAGAAAGCAGCCACCAACGCAGGGACATGCAGCCTCACCACCTCCCT
CCCTCCCTCCCTCCCTCCTTCTCCCCCCTCCTGACTCGTCGTCGCCAGCT
GCACGAGCAAGACCGCTGCCAAGCGTCGTGTAGGCCAAGAGCGTTTCCTC
CCTCCCTCCCTCACCAATTCAATTATATCAGGGAGGAGGAGGGAGAGGCC
TTCAAATCCCAATCCCATCGCCCCCAGACGTCCCACACACATCAGCACCT
CCCGCATACGCCACCGCAAATCGTCCAATTCCCCCCCGTCGTCCTCTATC
TCTTCCTCGTCCTCTTCCTCCCCATCGTCACTATCGTTGCCGTCGTTGTC
TTCCTCCATCTCCTCTTCCTCCTCCTCCCCGCCGCCATCACCGTCCTCCC
TACTTTCCTCCCCCTCCAGTCGATTCGCATTTCGACTCCCACTCCTGCTC
CGCTCTCGCCTTTTACTAATGTAGGCACGAAGGTAAGGCGCCTCCCCCTC
CTTCCCGTCTTCCCTCCCTCCTTCCCCCCTCAGAGTAGCCGCCAGCCAGG
GCACCACCTCAGCCACCACCAATCGACGGACCTCCTCATTCCCCTCCTTC
CCCCCGCCCTGCTTCTCTTCCTCCCCCCCGCCATTCTCCTCCTCCTCCTC
CTCCGCTGCTAG
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Synonyms
Publications