jgi.p|Nanoce1779_2|525804, mRNA_3774 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525804
Unique NamemRNA_3774
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length315
Alignment locationscaffold_6:1223695..1224009 -

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Properties
Property NameValue
TranscriptId525890
TrackFilteredModels2
ProteinId525804
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1223695..1224009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525804gene_3774Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3774CDS_3774Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525804mRNA_3774-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3774 ID=mRNA_3774|Name=jgi.p|Nanoce1779_2|525804|organism=Nannochloropsis oceanica|type=mRNA|length=315bp
ATGGAATTGCGCGAAAAACCACTCCCCATCGACATGCGCCTGCTCGGGAG
GGAGGCGGGGAGGGCCCAGGCCTTTGCCAAGTGCCTCAAGTACAAGGAGA
GGGAGTTCCACGCAGACCCGTCGCCGGAGTGTGTGGAGGCCCTCATCGAG
GTCTACAATCAGCTCGGGCTGAAGGAAGCGGCCTGCGGGGTGCTTCGGGC
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGGGGGGCCTGAGGCCGG
CGTGGTTGGAAAAGATCGTCCAATGGGAGAAGGCTTTGGTCTTGTATGAG
ACGTATGGTGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|525804

>mRNA_3774-protein ID=mRNA_3774-protein|Name=jgi.p|Nanoce1779_2|525804|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MELREKPLPIDMRLLGREAGRAQAFAKCLKYKEREFHADPSPECVEALIE
VYNQLGLKEAACGVLRAREGGREGGREAGGLRPAWLEKIVQWEKALVLYE
TYGE*
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mRNA from alignment at scaffold_6:1223695..1224009-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3774 ID=mRNA_3774|Name=jgi.p|Nanoce1779_2|525804|organism=Nannochloropsis oceanica|type=mRNA|length=315bp|location=Sequence derived from alignment at scaffold_6:1223695..1224009- (Nannochloropsis oceanica)
ATGGAATTGCGCGAAAAACCACTCCCCATCGACATGCGCCTGCTCGGGAG
GGAGGCGGGGAGGGCCCAGGCCTTTGCCAAGTGCCTCAAGTACAAGGAGA
GGGAGTTCCACGCAGACCCGTCGCCGGAGTGTGTGGAGGCCCTCATCGAG
GTCTACAATCAGCTCGGGCTGAAGGAAGCGGCCTGCGGGGTGCTTCGGGC
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGGGGGGCCTGAGGCCGG
CGTGGTTGGAAAAGATCGTCCAATGGGAGAAGGCTTTGGTCTTGTATGAG
ACGTATGGTGAGTAG
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Coding sequence (CDS) from alignment at scaffold_6:1223695..1224009-

>mRNA_3774 ID=mRNA_3774|Name=jgi.p|Nanoce1779_2|525804|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_6:1223695..1224009- (Nannochloropsis oceanica)
ATGGAATTGCGCGAAAAACCACTCCCCATCGACATGCGCCTGCTCGGGAG
GGAGGCGGGGAGGGCCCAGGCCTTTGCCAAGTGCCTCAAGTACAAGGAGA
GGGAGTTCCACGCAGACCCGTCGCCGGAGTGTGTGGAGGCCCTCATCGAG
GTCTACAATCAGCTCGGGCTGAAGGAAGCGGCCTGCGGGGTGCTTCGGGC
CAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGGGGGGCCTGAGGCCGG
CGTGGTTGGAAAAGATCGTCCAATGGGAGAAGGCTTTGGTCTTGTATGAG
ACGTATGGTGAGTAG
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Synonyms
Publications