jgi.p|Nanoce1779_2|583379, mRNA_3772 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583379
Unique Name	mRNA_3772
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	878
Alignment location	scaffold_6:1215804..1216681 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583465
Track	FilteredModels2
ProteinId	583379

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1215804..1216681 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583379	gene_3772	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583379	mRNA_3772-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3772	CDS_3772	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1215804..1216681+
coding sequence from alignment at scaffold_6:1215804..1216681+

mRNA sequence

>mRNA_3772 ID=mRNA_3772|Name=jgi.p|Nanoce1779_2|583379|organism=Nannochloropsis oceanica|type=mRNA|length=878bp
ACCAGAAAAGACAGAGGACACGAACGCTCACAGCCGCATGATGTCGTGAT
TTAGGCTTGTTTCAGTGCCTGTTCGACCAGGAGCCAGACAGACTGTCGAC
CAAATCTGTCCGTGCTGATCGCATGAAGGCCCGAAGAGGCACTTTCTAGG
CACGTGTCTTGGAGTGCGTAAAGTCCTCCAGACGATCAACATTTCATTTG
TTCCCCCCTGAACTATCAGCCAGTGTTAATAATTACGCATTAAGGATGCA
TTCGATCTCATATTGACCCAGCGGATCGTTGCAGCGCACTCCACAGAGGC
ATCCTGCCGCACATAGGGACCTCAACTTGCGACCATGCCAGCCACATTCT
CCGAGGTGGTAGTGACCACGTTAAATATCTTCGGACACGCTTCTTTCATA
CTTCTTATTCTAGTCATATGGTTTGCTTTCATGGCGTCATTAAAAGCTCC
CGCTGAGGATCCATCGTCGGACGTGTTGGTGCAGATCACGCTGTGCGTAC
TCAGTGTCGGCGTACCCTACGGAGCCTATAGCCTCTTATACAAGTCCACA
CTACCACTGCAACAACAACAAGAAGGTGAAAGACAATCACACGCATCCTT
TTTTGGCCGTGTCTTTCGAAGTGGCCTCGAGACTACGCGGGCGTGGGCTC
CAGGTGTCGATGAATCTGTGCGTGCCGGCGTTGCCCTAGGCGTAATAACC
TTGGTGGGGGCTTTTACGCACGAAGTCTTTCTAAAAATAGAGATGGGTGA
AGACCTTGTTGAGCAAGTGGTGACGTGGTTCGTGACGGGCTGTTTTCAGA
TGGTCGCATGCTCTCTTGCTCGATTAGCAGTGCGGTGGGCGTGCAATTGG
TAACAAGGAATAAGAAAAATACGAAGCG

protein sequence of jgi.p|Nanoce1779_2|583379

>mRNA_3772-protein ID=mRNA_3772-protein|Name=jgi.p|Nanoce1779_2|583379|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MPATFSEVVVTTLNIFGHASFILLILVIWFAFMASLKAPAEDPSSDVLVQ
ITLCVLSVGVPYGAYSLLYKSTLPLQQQQEGERQSHASFFGRVFRSGLET
TRAWAPGVDESVRAGVALGVITLVGAFTHEVFLKIEMGEDLVEQVVTWFV
TGCFQMVACSLARLAVRWACNW*

mRNA from alignment at scaffold_6:1215804..1216681+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3772 ID=mRNA_3772|Name=jgi.p|Nanoce1779_2|583379|organism=Nannochloropsis oceanica|type=mRNA|length=878bp|location=Sequence derived from alignment at scaffold_6:1215804..1216681+ (Nannochloropsis oceanica)
ACCAGAAAAGACAGAGGACACGAACGCTCACAGCCGCATGATGTCGTGAT
TTAGGCTTGTTTCAGTGCCTGTTCGACCAGGAGCCAGACAGACTGTCGAC
CAAATCTGTCCGTGCTGATCGCATGAAGGCCCGAAGAGGCACTTTCTAGG
CACGTGTCTTGGAGTGCGTAAAGTCCTCCAGACGATCAACATTTCATTTG
TTCCCCCCTGAACTATCAGCCAGTGTTAATAATTACGCATTAAGGATGCA
TTCGATCTCATATTGACCCAGCGGATCGTTGCAGCGCACTCCACAGAGGC
ATCCTGCCGCACATAGGGACCTCAACTTGCGACCATGCCAGCCACATTCT
CCGAGGTGGTAGTGACCACGTTAAATATCTTCGGACACGCTTCTTTCATA
CTTCTTATTCTAGTCATATGGTTTGCTTTCATGGCGTCATTAAAAGCTCC
CGCTGAGGATCCATCGTCGGACGTGTTGGTGCAGATCACGCTGTGCGTAC
TCAGTGTCGGCGTACCCTACGGAGCCTATAGCCTCTTATACAAGTCCACA
CTACCACTGCAACAACAACAAGAAGGTGAAAGACAATCACACGCATCCTT
TTTTGGCCGTGTCTTTCGAAGTGGCCTCGAGACTACGCGGGCGTGGGCTC
CAGGTGTCGATGAATCTGTGCGTGCCGGCGTTGCCCTAGGCGTAATAACC
TTGGTGGGGGCTTTTACGCACGAAGTCTTTCTAAAAATAGAGATGGGTGA
AGACCTTGTTGAGCAAGTGGTGACGTGGTTCGTGACGGGCTGTTTTCAGA
TGGTCGCATGCTCTCTTGCTCGATTAGCAGTGCGGTGGGCGTGCAATTGG
TAACAAGGAATAAGAAAAATACGAAGCG

Coding sequence (CDS) from alignment at scaffold_6:1215804..1216681+

>mRNA_3772 ID=mRNA_3772|Name=jgi.p|Nanoce1779_2|583379|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_6:1215804..1216681+ (Nannochloropsis oceanica)
ATGCCAGCCACATTCTCCGAGGTGGTAGTGACCACGTTAAATATCTTCGG
ACACGCTTCTTTCATACTTCTTATTCTAGTCATATGGTTTGCTTTCATGG
CGTCATTAAAAGCTCCCGCTGAGGATCCATCGTCGGACGTGTTGGTGCAG
ATCACGCTGTGCGTACTCAGTGTCGGCGTACCCTACGGAGCCTATAGCCT
CTTATACAAGTCCACACTACCACTGCAACAACAACAAGAAGGTGAAAGAC
AATCACACGCATCCTTTTTTGGCCGTGTCTTTCGAAGTGGCCTCGAGACT
ACGCGGGCGTGGGCTCCAGGTGTCGATGAATCTGTGCGTGCCGGCGTTGC
CCTAGGCGTAATAACCTTGGTGGGGGCTTTTACGCACGAAGTCTTTCTAA
AAATAGAGATGGGTGAAGACCTTGTTGAGCAAGTGGTGACGTGGTTCGTG
ACGGGCTGTTTTCAGATGGTCGCATGCTCTCTTGCTCGATTAGCAGTGCG
GTGGGCGTGCAATTGGTAA

Synonyms

Publications