jgi.p|Nanoce1779_2|373304, mRNA_3771 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|373304
Unique NamemRNA_3771
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1151
Alignment locationscaffold_6:1214328..1215683 -

Link to JBrowse

Properties
Property NameValue
TranscriptId373390
TrackFilteredModels2
ProteinId373304
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1214328..1215683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373304gene_3771Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373304mRNA_3771-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3771CDS_3771Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3771 ID=mRNA_3771|Name=jgi.p|Nanoce1779_2|373304|organism=Nannochloropsis oceanica|type=mRNA|length=1151bp
AGCAGCATCTGAGCTTTTCCCTTTCGTGTTTTCTTCTTCTTTCGTTGTTG
TCAATTTACATTAATGAATGTGGTTCACTCTTTTCCTGTTCTATTGCCTT
ACCCTGCTCTCCATCCACACGCATGACAGGCAAGTAAAAGCCATTGGCAC
ATCTGTCAATAAAGTAGCCAGAGCATCAGACCGCCGTGCAACAAGCAACG
CCATGAAGGCCCAAGAGCTCCAGCTGCTGGGGAATATCCTGGCCTTTCTC
AAGGCCAAGGGTTTCGACAAAACGGCCGCCGTGCTTTTGAAGGAAGGCAA
GGGAAAGGGGGCCTTATCCCTGACTGTGGGAAAGCAAGACTTGCTTGCTT
TGTATGTCAAGGCGGTGGGCGGGTCTGCGGCTGCTGACTTGGGGTTAACC
TCCTCCTCATCATCATCATCGTCGAGCGAAAGTGACGGTGAGAGTGAGAG
TGAGAGCGAAGGTGAAGGAGATAAGACGAAGCAGGCCGTGGCAGGGCCTG
TCACGCCCAAGGATAAGAAGAAGGGGGCTAACACACCTGTCACCACACCT
GCCGCCGCTCCTCCTCCTCCTCTAGTGAGAGTGAGAGCGAGGACGAAGAG
AAAAAGACCAAGCCGAATGCGACTGGTCCTGCGAAAAAAAACAGTTCTGC
CAAGACTGCTGCTGATGCCGAGGAGAGTGACTCGTCTTCCTCTTCCTCCT
CCAGTGACAGCGATAAGGAGGACGAGGAGGAGGAGACGACGACGACAACG
AAAAAAAAGGCACCTGCGGCCAAGCGCAAAGCAACTTCTCCTCCTGCTAC
TGCTGCCTCATCTTCATCCTCCTCATCATCAAGCGAGAGTGACGACAGCG
AGGAGGAGGAGGAAGAGGTCAAGGAGAAGAAGGCCTCCACTCCCAAGAAG
CCCGCAGCGGTGCAAGTCGCCGCCAATAAAAAACGAAAGGCCGCAGCTGA
TGCGCTCTCCTCCTCTTCCTCCTCCTCGTCGTCGGAGGATGGCGATGACG
AGTCCAGTTCCAGCGATGAGGAGGAGGAGGAGGAAGAGGAGGAGGTGAAG
GGGAAAGTGGAGGGAAATAAGACGACGAAAACGAAAGCTGCTGCGCCTAA
TAAGAAGGCCAAGGTCGCGAAAAGCAAAAGCAGTAGTAGTAGTAGTAGTA
G
back to top

protein sequence of jgi.p|Nanoce1779_2|373304

>mRNA_3771-protein ID=mRNA_3771-protein|Name=jgi.p|Nanoce1779_2|373304|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MWFTLFLFYCLTLLSIHTHDRQVKAIGTSVNKVARASDRRATSNAMKAQE
LQLLGNILAFLKAKGFDKTAAVLLKEGKGKGALSLTVGKQDLLALYVKAV
GGSAAADLGLTSSSSSSSSSESDGESESESEGEGDKTKQAVAGPVTPKDK
KKGANTPVTTPAAAPPPPLVRVRARTKRKRPSRMRLVLRKKTVLPRLLLM
PRRVTRLPLPPPVTAIRRTRRRRRRRQRKKRHLRPSAKQLLLLLLLPHLH
PPHHQARVTTARRRRKRSRRRRPPLPRSPQRCKSPPIKNERPQLMRSPPL
PPPRRRRMAMTSPVPAMRRRRRKRRR*
back to top

mRNA from alignment at scaffold_6:1214328..1215683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3771 ID=mRNA_3771|Name=jgi.p|Nanoce1779_2|373304|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at scaffold_6:1214328..1215683- (Nannochloropsis oceanica)
AGCAGCATCTGAGCTTTTCCCTTTCGTGTTTTCTTCTTCTTTCGTTGTTG
TCAATTTACATTAATGAATGTGGTTCACTCTTTTCCTGTTCTATTGCCTT
ACCCTGCTCTCCATCCACACGCATGACAGGCAAGTAAAAGCCATTGGCAC
ATCTGTCAATAAAGTAGCCAGAGCATCAGACCGCCGTGCAACAAGCAACG
CCATGAAGGCCCAAGAGCTCCAGCTGCTGGGGAATATCCTGGCCTTTCTC
AAGGTATGCATGCAGTGTTTGCTGTATATTACATGTAGCTCTATGCAGAT
GTGGGCTGTATGCGCGGTATTACTGGCCTCAAGTAGATGCACCATCGGTG
GATACACCATCCCACGCCATTCTTCCCTCCACTCCCCATCCTACACACAG
GCCAAGGGTTTCGACAAAACGGCCGCCGTGCTTTTGAAGGAAGGCAAGGG
AAAGGGGGCCTTATCCCTGACTGTGGGAAAGCAAGACTTGCTTGCTTTGT
ATGTCAAGGCGGTGGGCGGGTCTGCGGCTGCTGACTTGGGGTTAACCTCC
TCCTCATCATCATCATCGTCGAGCGAAAGTGACGGTGAGAGTGAGAGTGA
GAGCGAAGGTGAAGGAGATAAGACGAAGCAGGCCGTGGCAGGGCCTGTCA
CGCCCAAGGATAAGAAGAAGGGGGCTAACACACCTGTCACCACACCTGCC
GCCGCGTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTC
CTCCTCCTCTTCCTCCTCCTCCTCCTCTAGTGAGAGTGAGAGCGAGGACG
AAGAGAAAAAGACCAAGCCGAATGCGACTGGTCCTGCGAAAAAAAACAGT
TCTGCCAAGACTGCTGCTGATGCCGAGGAGAGTGACTCGTCTTCCTCTTC
CTCCTCCAGTGACAGCGATAAGGAGGACGAGGAGGAGGAGACGACGACGA
CAACGAAAAAAAAGGCACCTGCGGCCAAGCGCAAAGCAACTTCTCCTCCT
GCTACTGCTGCCTCATCTTCATCCTCCTCATCATCAAGCGAGAGTGACGA
CAGCGAGGAGGAGGAGGAAGAGGTCAAGGAGAAGAAGGCCTCCACTCCCA
AGAAGCCCGCAGCGGTGCAAGTCGCCGCCAATAAAAAACGAAAGGCCGCA
GCTGATGCGCTCTCCTCCTCTTCCTCCTCCTCGTCGTCGGAGGATGGCGA
TGACGAGTCCAGTTCCAGCGATGAGGAGGAGGAGGAGGAAGAGGAGGAGG
TGAAGGGGAAAGTGGAGGGAAATAAGACGACGAAAACGAAAGCTGCTGCG
CCTAATAAGAAGGCCAAGGTCGCGAAAAGCAAAAGCAGTAGTAGTAGTAG
TAGTAG
back to top

Coding sequence (CDS) from alignment at scaffold_6:1214328..1215683-

>mRNA_3771 ID=mRNA_3771|Name=jgi.p|Nanoce1779_2|373304|organism=Nannochloropsis oceanica|type=CDS|length=2943bp|location=Sequence derived from alignment at scaffold_6:1214328..1215683- (Nannochloropsis oceanica)
TCCTCCTCCTCCTCTAGTGAGAGTGAGAGCGAGGACGAAGAGAAAAAGAC
CAAGCCGAATGCGACTGGTCCTGCGAAAAAAAACAGTTCTGCCAAGACTG
CTGCTGATGCCGAGGAGAGTGACTCGTCTTCCTCTTCCTCCTCCAGTGAC
AGCGATAAGGAGGACGAGGAGGAGGAGACGACGACGACAACGAAAAAAAA
GGCACCTGCGGCCAAGCGCAAAGCAACTTCTCCTCCTGCTACTGCTGCCT
CATCTTCATCCTCCTCATCATCAAGCGAGAGTGACGACAGCGAGGAGGAG
GAGGAAGAGGTCAAGGAGAAGAAGGCCTCCACTCCCAAGAAGCCCGCAGC
GGTGCAAGTCGCCGCCAATAAAAAACGAAAGGCCGCAGCTGATGCGCTCT
CCTCCTCTTCCTCCTCCTCGTCGTCGGAGGATGGCGATGACGAGTCCAGT
TCCAGCGATGAGGAGGAGGAGGAGGAAGAGGAGGAGGTGAGCCAAGGGTT
TCGACAAAACGGCCGCCGTGCTTTTGAAGGAAGGCAAGGGAAAGGGGGCC
TTATCCCTGACTGTGGGAAAGCAAGACTTGCTTGCTTTGTATGTCAAGGC
GGTGGGCGGGTCTGCGGCTGCTGACTTGGGGTTAACCTCCTCCTCATCAT
CATCATCGTCGAGCGAAAGTGACGGTGAGAGTGAGAGTGAGAGCGAAGGT
GAAGGAGATAAGACGAAGCAGGCCGTGGCAGGGCCTGTCACGCCCAAGGA
TAAGAAGAAGGGGGCTAACACACCTGTCACCACACCTGCCGCCGCATGTG
GTTCACTCTTTTCCTGTTCTATTGCCTTACCCTGCTCTCCATCCACACGC
ATGACAGGCAAGTAAAAGCCATTGGCACATCTGTCAATAAAGTAGCCAGA
GCATCAGACCGCCGTGCAACAAGCAACGCCATGAAGGCCCAAGAGCTCCA
GCTGCTGGGGAATATCCTGGCCTTTCTCAAGTCCTCCTCCTCCTCTAGTG
AGAGTGAGAGCGAGGACGAAGAGAAAAAGACCAAGCCGAATGCGACTGGT
CCTGCGAAAAAAAACAGTTCTGCCAAGACTGCTGCTGATGCCGAGGAGAG
TGACTCGTCTTCCTCTTCCTCCTCCAGTGACAGCGATAAGGAGGACGAGG
AGGAGGAGACGACGACGACAACGAAAAAAAAGGCACCTGCGGCCAAGCGC
AAAGCAACTTCTCCTCCTGCTACTGCTGCCTCATCTTCATCCTCCTCATC
ATCAAGCGAGAGTGACGACAGCGAGGAGGAGGAGGAAGAGGTCAAGGAGA
AGAAGGCCTCCACTCCCAAGAAGCCCGCAGCGGTGCAAGTCGCCGCCAAT
AAAAAACGAAAGGCCGCAGCTGATGCGCTCTCCTCCTCTTCCTCCTCCTC
GTCGTCGGAGGATGGCGATGACGAGTCCAGTTCCAGCGATGAGGAGGAGG
AGGAGGAAGAGGAGGAGGTGAGCCAAGGGTTTCGACAAAACGGCCGCCGT
GCTTTTGAAGGAAGGCAAGGGAAAGGGGGCCTTATCCCTGACTGTGGGAA
AGCAAGACTTGCTTGCTTTGTATGTCAAGGCGGTGGGCGGGTCTGCGGCT
GCTGACTTGGGGTTAACCTCCTCCTCATCATCATCATCGTCGAGCGAAAG
TGACGGTGAGAGTGAGAGTGAGAGCGAAGGTGAAGGAGATAAGACGAAGC
AGGCCGTGGCAGGGCCTGTCACGCCCAAGGATAAGAAGAAGGGGGCTAAC
ACACCTGTCACCACACCTGCCGCCGCATGTGGTTCACTCTTTTCCTGTTC
TATTGCCTTACCCTGCTCTCCATCCACACGCATGACAGGCAAGTAAAAGC
CATTGGCACATCTGTCAATAAAGTAGCCAGAGCATCAGACCGCCGTGCAA
CAAGCAACGCCATGAAGGCCCAAGAGCTCCAGCTGCTGGGGAATATCCTG
GCCTTTCTCAAGTCCTCCTCCTCCTCTAGTGAGAGTGAGAGCGAGGACGA
AGAGAAAAAGACCAAGCCGAATGCGACTGGTCCTGCGAAAAAAAACAGTT
CTGCCAAGACTGCTGCTGATGCCGAGGAGAGTGACTCGTCTTCCTCTTCC
TCCTCCAGTGACAGCGATAAGGAGGACGAGGAGGAGGAGACGACGACGAC
AACGAAAAAAAAGGCACCTGCGGCCAAGCGCAAAGCAACTTCTCCTCCTG
CTACTGCTGCCTCATCTTCATCCTCCTCATCATCAAGCGAGAGTGACGAC
AGCGAGGAGGAGGAGGAAGAGGTCAAGGAGAAGAAGGCCTCCACTCCCAA
GAAGCCCGCAGCGGTGCAAGTCGCCGCCAATAAAAAACGAAAGGCCGCAG
CTGATGCGCTCTCCTCCTCTTCCTCCTCCTCGTCGTCGGAGGATGGCGAT
GACGAGTCCAGTTCCAGCGATGAGGAGGAGGAGGAGGAAGAGGAGGAGGT
GAGCCAAGGGTTTCGACAAAACGGCCGCCGTGCTTTTGAAGGAAGGCAAG
GGAAAGGGGGCCTTATCCCTGACTGTGGGAAAGCAAGACTTGCTTGCTTT
GTATGTCAAGGCGGTGGGCGGGTCTGCGGCTGCTGACTTGGGGTTAACCT
CCTCCTCATCATCATCATCGTCGAGCGAAAGTGACGGTGAGAGTGAGAGT
GAGAGCGAAGGTGAAGGAGATAAGACGAAGCAGGCCGTGGCAGGGCCTGT
CACGCCCAAGGATAAGAAGAAGGGGGCTAACACACCTGTCACCACACCTG
CCGCCGCATGTGGTTCACTCTTTTCCTGTTCTATTGCCTTACCCTGCTCT
CCATCCACACGCATGACAGGCAAGTAAAAGCCATTGGCACATCTGTCAAT
AAAGTAGCCAGAGCATCAGACCGCCGTGCAACAAGCAACGCCATGAAGGC
CCAAGAGCTCCAGCTGCTGGGGAATATCCTGGCCTTTCTCAAG
back to top
Synonyms
Publications