jgi.p|Nanoce1779_2|629122, mRNA_3770 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629122
Unique NamemRNA_3770
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length675
Alignment locationscaffold_6:1213282..1214255 -

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Properties
Property NameValue
TranscriptId629208
TrackFilteredModels2
ProteinId629122
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1213282..1214255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629122gene_3770Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629122mRNA_3770-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3770CDS_3770Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3770 ID=mRNA_3770|Name=jgi.p|Nanoce1779_2|629122|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
CGAGAGTGACAGCGAGAGCGAGGACGAGGAGATGGTCGCCGCCCGCAAGG
CCGCTGCTGAAGAGGATCGACGACGGAAGTCGGTGGCTGCGGCCATGGCA
TGGCAGGCAGCCCAGGATGAGAAGGAGCAGCAGCTGCAGAGCCCCGGCGG
AGGCAACGGCAGCAACAGCGGCGGCAAGGGGGGAGGAGGGAGGGGGGAGA
GGGCGCCGGGGGAGGCGTTCAGGCGGGTGGATGACGTGTATTGGGGTGGG
CAGATCAAGGACGAGCGGTTGAAGGATAACTCTTACGCTGGCACGTTCGG
CAGCGGTGGATATGGCGCGAAAGCCAGCGAAAAGTTAATGACGGTACGGG
GGAAAGATTTCCGGCACGAGAAGACGAAGAAAAAGAGAGGTAACTACAGA
GGGGGTGCCATCTCCCTAGCGAGTCACTCGATTAAGTACGACTATGGCTC
AGATGAGTAGGGAGGGAGGGAGTGAGGGAGGACTTGAGAGAGGGAGGACG
GGAGGGGTCCGGGTGGGGTGTGTAGTGTGTACTTGTGTGATGGGTTGAAG
AAAAAAGAGAGAGGAAAAGAAGAGAGAGGGGAAAAGGTGGAGTGGAGGAG
TAGGAGGAGGAGGAGGAGGACGACGAGGAGAACGACTTTGTATCGGTGGA
GGGGGGGTGGGGGGAAAGAGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|629122

>mRNA_3770-protein ID=mRNA_3770-protein|Name=jgi.p|Nanoce1779_2|629122|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MVAARKAAAEEDRRRKSVAAAMAWQAAQDEKEQQLQSPGGGNGSNSGGKG
GGGRGERAPGEAFRRVDDVYWGGQIKDERLKDNSYAGTFGSGGYGAKASE
KLMTVRGKDFRHEKTKKKRGNYRGGAISLASHSIKYDYGSDE*
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mRNA from alignment at scaffold_6:1213282..1214255-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3770 ID=mRNA_3770|Name=jgi.p|Nanoce1779_2|629122|organism=Nannochloropsis oceanica|type=mRNA|length=974bp|location=Sequence derived from alignment at scaffold_6:1213282..1214255- (Nannochloropsis oceanica)
CGAGAGTGACAGGTATTGAATGTACCCCCCCCCTTCTCTCCTGCCATCCT
TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTCC
CTCCCCTAAGCATCCTTTGCTCCCTTCATCTCCTCTCTGAGTCCCCGTGC
CCTACCCTCCTCCTATCCCCTCCCCCTCAAACACCCACCAGCGAGAGCGA
GGACGAGGAGATGGTCGCCGCCCGCAAGGCCGCTGCTGAAGAGGATCGAC
GACGGAAGTCGGTGGCTGCGGCCATGGCATGGCAGGCAGCCCAGGATGAG
AAGGAGCAGCAGCTGCAGAGCCCCGGCGGAGGCAACGGCAGCAACAGCGG
CGGCAAGGGGGGAGGAGGGAGGGGGGAGAGGGCGCCGGGGGAGGCGTTCA
GGCGGGTGGATGACGTGTATTGGGGTGGGCAGATCAAGGACGAGCGGTTG
AAGGATAACTCTTGTGAGTAGGGAGGGAGGAAGGAAGGACTGTGGGTTTT
AAGTGGCTTTCGTTCGAAGCTCGTGACACTAGGAAATGATGGCACTCACC
TTCCCTCCCTCCTTCCCCCCCTTCCTCCTTCAGACGCTGGCACGTTCGGC
AGCGGTGGATATGGCGCGAAAGCCAGCGAAAAGTTAATGACGGTACGGGG
GAAAGATTTCCGGCACGAGAAGACGAAGAAAAAGAGAGGTAACTACAGAG
GGGGTGCCATCTCCCTAGCGAGTCACTCGATTAAGTACGACTATGGCTCA
GATGAGTAGGGAGGGAGGGAGTGAGGGAGGACTTGAGAGAGGGAGGACGG
GAGGGGTCCGGGTGGGGTGTGTAGTGTGTACTTGTGTGATGGGTTGAAGA
AAAAAGAGAGAGGAAAAGAAGAGAGAGGGGAAAAGGTGGAGTGGAGGAGT
AGGAGGAGGAGGAGGAGGACGACGAGGAGAACGACTTTGTATCGGTGGAG
GGGGGGTGGGGGGAAAGAGGGGGG
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Coding sequence (CDS) from alignment at scaffold_6:1213282..1214255-

>mRNA_3770 ID=mRNA_3770|Name=jgi.p|Nanoce1779_2|629122|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_6:1213282..1214255- (Nannochloropsis oceanica)
ACGCTGGCACGTTCGGCAGCGGTGGATATGGCGCGAAAGCCAGCGAAAAG
TTAATGACGGTACGGGGGAAAGATTTCCGGCACGAGAAGACGAAGAAAAA
GAGAGGTAACTACAGAGGGGGTGCCATCTCCCTAGCGAGTCACTCGATTA
AGTACGACTATGGCTCAGATGAGTAGATGGTCGCCGCCCGCAAGGCCGCT
GCTGAAGAGGATCGACGACGGAAGTCGGTGGCTGCGGCCATGGCATGGCA
GGCAGCCCAGGATGAGAAGGAGCAGCAGCTGCAGAGCCCCGGCGGAGGCA
ACGGCAGCAACAGCGGCGGCAAGGGGGGAGGAGGGAGGGGGGAGAGGGCG
CCGGGGGAGGCGTTCAGGCGGGTGGATGACGTGTATTGGGGTGGGCAGAT
CAAGGACGAGCGGTTGAAGGATAACTCTTACGCTGGCACGTTCGGCAGCG
GTGGATATGGCGCGAAAGCCAGCGAAAAGTTAATGACGGTACGGGGGAAA
GATTTCCGGCACGAGAAGACGAAGAAAAAGAGAGGTAACTACAGAGGGGG
TGCCATCTCCCTAGCGAGTCACTCGATTAAGTACGACTATGGCTCAGATG
AGTAGATGGTCGCCGCCCGCAAGGCCGCTGCTGAAGAGGATCGACGACGG
AAGTCGGTGGCTGCGGCCATGGCATGGCAGGCAGCCCAGGATGAGAAGGA
GCAGCAGCTGCAGAGCCCCGGCGGAGGCAACGGCAGCAACAGCGGCGGCA
AGGGGGGAGGAGGGAGGGGGGAGAGGGCGCCGGGGGAGGCGTTCAGGCGG
GTGGATGACGTGTATTGGGGTGGGCAGATCAAGGACGAGCGGTTGAAGGA
TAACTCTT
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Synonyms
Publications