jgi.p|Nanoce1779_2|373293, mRNA_3769 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|373293
Unique NamemRNA_3769
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length916
Alignment locationscaffold_6:1211411..1213051 +

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Properties
Property NameValue
TranscriptId373379
TrackFilteredModels2
ProteinId373293
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1211411..1213051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373293gene_3769Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373293mRNA_3769-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3769CDS_3769Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3769 ID=mRNA_3769|Name=jgi.p|Nanoce1779_2|373293|organism=Nannochloropsis oceanica|type=mRNA|length=916bp
GCTCAGGGCATGGAGGGTTCTGGCCCCAGCGACGAGCTCCAGGAGGTGGA
GGAGGAACTACTTCACAAGAAAGAAGACGTATGCCATTCCCCCCACTCGA
CTGAGATGACGCACCTCGAGAATGGCAGCAGCAGCAACAACAGCAGCAAC
AACAGCGGAGCGGGTCGCCGTTGGGAGGGGGCCATGGGCGGCAGGGATCA
TACCACCCGCAGGACAGCAGAGGGAAGGGGGGGGGAGGGACGAAGGTGTT
CACGCAGGTACGGGAGGGAGGGAGGGAGGGGAGGAGAGGAGAGGAAAGGA
GAGGAGCGAGAGGGACGAGGATGGTTTCTGCTGGGAAGGAAGGGAGGGAC
GGAGGGAGGGAAAAGAAGAAACAGGAGGACAGACGATTGATCTTTCCCCT
CCCTCCCTCCCTCCCTCCCTTCCGTCCTCCCTCCCGTCCTCTCTCTCCCA
GGCCCTCACCCTCACCTTTCTGGCCGAATGGGGAGACCGCTCTCAAATCG
CGACGATCGCCCTCGCTGCTGCCAAGGATCCCTTTGGTGTGACGGCCGGG
GGCATCTTAGGCCACTCGCTGTGCACGGGGCTGGCGGTAGTAGGTGGCCG
CATGCTGGCTGCCAGGATCAGCGAGAAGACCGTCGCCTCCACGGGCGGCG
CACTCTTCCTGGTTTTCTGCCTCCACTCCCTGCTCGTGGGACCGTGACGA
AAAGGAGGGAGGGAGGGAGGGAGGGAGGGGTAGATAACTGCGTACTCTTC
TTCTTATTTTTAAATCGTAGTGGCAAGTCGAATTGTGTTGGAAAGAGGAA
GGGAAGAAAAGAAACGTTGAGTGATGCAGCTAGAGCCACTACCACTGTAC
CAGCAGCAGCAGCAGCAGCAGCAGTAGCACGACAAACACCACCAGCACAA
AATGAGAGAAAGAGCA
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protein sequence of jgi.p|Nanoce1779_2|373293

>mRNA_3769-protein ID=mRNA_3769-protein|Name=jgi.p|Nanoce1779_2|373293|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MAAAATTAATTAERVAVGRGPWAAGIIPPAGQQREGGGRDEGVHAGTGGR
EGGEERRGKERSERDEDGFCWEGREGRREGKEETGGQTIDLSPPSLPPSL
PSSLPSSLSQALTLTFLAEWGDRSQIATIALAAAKDPFGVTAGGILGHSL
CTGLAVVGGRMLAARISEKTVASTGGALFLVFCLHSLLVGP*
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mRNA from alignment at scaffold_6:1211411..1213051+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3769 ID=mRNA_3769|Name=jgi.p|Nanoce1779_2|373293|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at scaffold_6:1211411..1213051+ (Nannochloropsis oceanica)
GCTCAGGGCATGGAGGGTTCTGGCCCCAGCGACGAGCTCCAGGAGGTGGA
GGAGGAACTACTTCACAAGAAAGAAGGTACTTTCCCCTTCCCTCCCTCCC
TTCCTCCCTCCCTTCCTCCCTCCCTCCGTCCCCTCCCTCCGTCCCTCCCT
CCCTCCCGCTGTTTTCCTTTCTTTTCGTTCTCGCCTTTGCTCACCTGACG
CAACGGTCGTGCCGTTTCTACCATATTTCATCCTCCCTCCCTCCCTCCCT
CCCTTCCCCCAGACGTATGCCATTCCCCCCACTCGACTGAGATGACGCAC
CTCGAGAATGGCAGCAGCAGCAACAACAGCAGCAACAACAGCGGCAGTTG
CAGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGAGGA
GCGGGTCGCCGTTGGGAGGGGGCCATGGGCGGCAGGGATCATACCACCCG
CAGGACAGCAGAGGGAAGGGGGGGGGAGGGACGAAGGTGTTCACGCAGGT
ACGGGAGGGAGGGAGGGAGGGGAGGAGAGGAGAGGAAAGGAGAGGAGCGA
GAGGGACGAGGATGGTTTCTGCTGGGAAGGAAGGGAGGGACGGAGGGAGG
GAAAAGAAGAAACAGGAGGACAGACGATTGATCTTTCCCCTCCCTCCCTC
CCTCCCTCCCTTCCGTCCTCCCTCCCGTCCTCTCTCTCCCAGGCCCTCAC
CCTCACCTTTCTGGCCGAATGGGGAGACCGCTCTCAAATCGCGACGATCG
CCCTCGCTGCTGCCAAGGATCCCTTTGGTGGTACGTCCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTTCTCCCCCCAAAGTAATGGCTGCTGG
CCTTCTCTGCCCAGGCCCACCCTCCCTTACCCCCTCTCCCTCCCTCCACC
CCTCCCTCCCTCCCTCCAGTGACGGCCGGGGGCATCTTAGGCCACTCGCT
GTGCACGGGGCTGGCGGTAGTAGGTGGCCGCATGCTGGCTGCCAGGATCA
GCGAGAAGACCGTCGCCTCCACGGTACGTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCCTTCTCCCTTCCTCCCTCCCTCCCCTCTCCCTC
CCTCTTTTCCTGCCCCCCTCTCTGTGTGACACGACGCCCACCAACCCTCC
TTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCT
CCCTTCCTCCCTCCCTCCCCTCTCCCTCCCTCTTTTCCTGCCCCCCTCTC
TGTGTGACACGACGCCCACCAACCCTCCTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCCCCCTCCCTCGTACAGGGCGGCGCACTCTTC
CTGGTTTTCTGCCTCCACTCCCTGCTCGTGGGACCGTGACGAAAAGGAGG
GAGGGAGGGAGGGAGGGAGGGGTAGATAACTGCGTACTCTTCTTCTTATT
TTTAAATCGTAGTGGCAAGTCGAATTGTGTTGTGAAAGAAAAAGGAAGGG
AGGGAGGGAGGAAGGGAAAGAGGAAGGGAAGAAAAGAAACGTTGAGTGAT
GCAGCTAGAGCCACTACCACTGTACCAGCAGCAGCAGCAGCAGCAGCAGT
AGCACGACAAACACCACCAGCACAAAATGAGAGAAAGAGCA
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Coding sequence (CDS) from alignment at scaffold_6:1211411..1213051+

>mRNA_3769 ID=mRNA_3769|Name=jgi.p|Nanoce1779_2|373293|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_6:1211411..1213051+ (Nannochloropsis oceanica)
ATGGCAGCAGCAGCAACAACAGCAGCAACAACAGCGGAGCGGGTCGCCGT
TGGGAGGGGGCCATGGGCGGCAGGGATCATACCACCCGCAGGACAGCAGA
GGGAAGGGGGGGGGAGGGACGAAGGTGTTCACGCAGGTACGGGAGGGAGG
GAGGGAGGGGAGGAGAGGAGAGGAAAGGAGAGGAGCGAGAGGGACGAGGA
TGGTTTCTGCTGGGAAGGAAGGGAGGGACGGAGGGAGGGAAAAGAAGAAA
CAGGAGGACAGACGATTGATCTTTCCCCTCCCTCCCTCCCTCCCTCCCTT
CCGTCCTCCCTCCCGTCCTCTCTCTCCCAGGCCCTCACCCTCACCTTTCT
GGCCGAATGGGGAGACCGCTCTCAAATCGCGACGATCGCCCTCGCTGCTG
CCAAGGATCCCTTTGGTGTGACGGCCGGGGGCATCTTAGGCCACTCGCTG
TGCACGGGGCTGGCGGTAGTAGGTGGCCGCATGCTGGCTGCCAGGATCAG
CGAGAAGACCGTCGCCTCCACGGGCGGCGCACTCTTCCTGGTTTTCTGCC
TCCACTCCCTGCTCGTGGGACCGTGAATGGCAGCAGCAGCAACAACAGCA
GCAACAACAGCGGAGCGGGTCGCCGTTGGGAGGGGGCCATGGGCGGCAGG
GATCATACCACCCGCAGGACAGCAGAGGGAAGGGGGGGGGAGGGACGAAG
GTGTTCACGCAGGTACGGGAGGGAGGGAGGGAGGGGAGGAGAGGAGAGGA
AAGGAGAGGAGCGAGAGGGACGAGGATGGTTTCTGCTGGGAAGGAAGGGA
GGGACGGAGGGAGGGAAAAGAAGAAACAGGAGGACAGACGATTGATCTTT
CCCCTCCCTCCCTCCCTCCCTCCCTTCCGTCCTCCCTCCCGTCCTCTCTC
TCCCAGGCCCTCACCCTCACCTTTCTGGCCGAATGGGGAGACCGCTCTCA
AATCGCGACGATCGCCCTCGCTGCTGCCAAGGATCCCTTTGGTGTGACGG
CCGGGGGCATCTTAGGCCACTCGCTGTGCACGGGGCTGGCGGTAGTAGGT
GGCCGCATGCTGGCTGCCAGGATCAGCGAGAAGACCGTCGCCTCCACGGG
CGGCGCACTCTTCCTGGTTTTCTGCCTCCACTCCCTGCTCGTGGGACCGT
GAATGGCAGCAGCAGCAACAACAGCAGCAACAACAGCGGAGCGGGTCGCC
GTTGGGAGGGGGCCATGGGCGGCAGGGATCATACCACCCGCAGGACAGCA
GAGGGAAGGGGGGGGGAGGGACGAAGGTGTTCACGCAGGTACGGGAGGGA
GGGAGGGAGGGGAGGAGAGGAGAGGAAAGGAGAGGAGCGAGAGGGACGAG
GATGGTTTCTGCTGGGAAGGAAGGGAGGGACGGAGGGAGGGAAAAGAAGA
AACAGGAGGACAGACGATTGATCTTTCCCCTCCCTCCCTCCCTCCCTCCC
TTCCGTCCTCCCTCCCGTCCTCTCTCTCCCAGGCCCTCACCCTCACCTTT
CTGGCCGAATGGGGAGACCGCTCTCAAATCGCGACGATCGCCCTCGCTGC
TGCCAAGGATCCCTTTGGTGTGACGGCCGGGGGCATCTTAGGCCACTCGC
TGTGCACGGGGCTGGCGGTAGTAGGTGGCCGCATGCTGGCTGCCAGGATC
AGCGAGAAGACCGTCGCCTCCACGGGCGGCGCACTCTTCCTGGTTTTCTG
CCTCCACTCCCTGCTCGTGGGACCGTGAATGGCAGCAGCAGCAACAACAG
CAGCAACAACAGCGGAGCGGGTCGCCGTTGGGAGGGGGCCATGGGCGGCA
GGGATCATACCACCCGCAGGACAGCAGAGGGAAGGGGGGGGGAGGGACGA
AGGTGTTCACGCAGGTACGGGAGGGAGGGAGGGAGGGGAGGAGAGGAGAG
GAAAGGAGAGGAGCGAGAGGGACGAGGATGGTTTCTGCTGGGAAGGAAGG
GAGGGACGGAGGGAGGGAAAAGAAGAAACAGGAGGACAGACGATTGATCT
TTCCCCTCCCTCCCTCCCTCCCTCCCTTCCGTCCTCCCTCCCGTCCTCTC
TCTCCCAGGCCCTCACCCTCACCTTTCTGGCCGAATGGGGAGACCGCTCT
CAAATCGCGACGATCGCCCTCGCTGCTGCCAAGGATCCCTTTGGTGTGAC
GGCCGGGGGCATCTTAGGCCACTCGCTGTGCACGGGGCTGGCGGTAGTAG
GTGGCCGCATGCTGGCTGCCAGGATCAGCGAGAAGACCGTCGCCTCCACG
GGCGGCGCACTCTTCCTGGTTTTCTGCCTCCACTCCCTGCTCGTGGGACC
GTGA
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Synonyms
Publications