jgi.p|Nanoce1779_2|373269, mRNA_3768 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|373269
Unique Name	mRNA_3768
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1260
Alignment location	scaffold_6:1209858..1211756 +

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Properties


Property Name	Value
TranscriptId	373355
Track	FilteredModels2
ProteinId	373269

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1209858..1211756 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|373269	gene_3768	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|373269	mRNA_3768-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3768	CDS_3768	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1209858..1211756+
coding sequence from alignment at scaffold_6:1209858..1211756+

mRNA sequence

>mRNA_3768 ID=mRNA_3768|Name=jgi.p|Nanoce1779_2|373269|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp
GGACCCGTTTGAATCGTTTACAACTTAGTTACTCACTGGCATGCACCGTC
CACCCACCATCCCTGCACACATTCACACCACCACAGACTCAAGACGACAA
GGCGTGGCACTGCTGCTACGCTGGCTGCGACCTCTTCTTCACCTCCGGCT
TGGAGTGTGCGCGCCCTCTCGTCTTGTCACGTTCTCTGTTGACGAAGACC
ACCATCATCATCAGGAGTCTCGCCAAGTCAAGGCCTTAATACTCCTCTCA
ACGACCATAAACAACCAGCAGTGGTACTGAGATAACAATGCCAAGAAGAA
GAGTCACCCACAGCACCTCATCTCTTGCCCCTCCTCCCCTCTCCCGCTCC
ACGTCCTCCTCTTCGTGGTTGTCGTCCTCCTCCACCTTCTCCTCTAAGCC
CAGGCGCTCCCTCTGCATGGGCAGCCTCCTCGTGCTTGCCATCCTTCTCA
TTGGCGTGATCACTCTAATCAGCGCAGAGAATGTGCTCCCCGACAGCGGG
AGCGGGGATGGCAGCGTCGTTTTCTTTCGGGCAGACAACTTCGGGGATGA
CGCTTATCCAGCCCTGGGGGAGGAGGGAGGGAAGGGAAAAAGGATCGAGG
GGGCGGCAGAGGTTATGGCCTCCGATGTAGACGAGTCGGGTATGCCCATC
CTGGGCTTCTGGCCCGCATTTTTTAACTCCCTGTCCATGATCCTCGTTAC
AGAGCTGGGGGACAAGACATTTTTCATCGCTGCCGTGCTGGCCATGCGCT
ACGACCGACTCCTCATCTTCGGCGGGGCCATTGGGGCCCTAATCCTGATG
ACCATCCTCTCGGCCGCCATCGGCAACGTCCTCCCTAATGTACTCCCCCG
GAAATACACACATTACGCCTCAGCGTTCCTCTTCCTCTACTTTGGCATCA
AGCTCCTCATGGAAGCTCAGGGCATGGAGGGTTCTGGCCCCAGCGACGAG
CTCCAGGAGGTGGAGGAGGAACTACTTCACAAGAAAGAAGGTACTTTCCC
CTTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCGTCCCCTCC
CTCCGTCCCTCCCTCCCTCCCGCTGTTTTCCTTTCTTTTCGTTCTCGCCT
TTGCTCACCTGACGCAACGGTCGTGCCGTTTCTACCATATTTCATCCTCC
CTCCCTCCCTCCCTCCCTTCCCCCAGACGTATGCCATTCCCCCCACTCGA
CTGAGATGACGCACCTCGAGAATGGCAGCAGCAGCAACAACAGCAGCAAC
AACAGCGGCA

protein sequence of jgi.p|Nanoce1779_2|373269

>mRNA_3768-protein ID=mRNA_3768-protein|Name=jgi.p|Nanoce1779_2|373269|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MPRRRVTHSTSSLAPPPLSRSTSSSSWLSSSSTFSSKPRRSLCMGSLLVL
AILLIGVITLISAENVLPDSGSGDGSVVFFRADNFGDDAYPALGEEGGKG
KRIEGAAEVMASDVDESGMPILGFWPAFFNSLSMILVTELGDKTFFIAAV
LAMRYDRLLIFGGAIGALILMTILSAAIGNVLPNVLPRKYTHYASAFLFL
YFGIKLLMEAQGMEGSGPSDELQEVEEELLHKKEGTFPFPPSLPPSLPPS
LRPLPPSLPPSRCFPFFSFSPLLT*

mRNA from alignment at scaffold_6:1209858..1211756+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3768 ID=mRNA_3768|Name=jgi.p|Nanoce1779_2|373269|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp|location=Sequence derived from alignment at scaffold_6:1209858..1211756+ (Nannochloropsis oceanica)
GGACCCGTTTGAATCGTTTACAACTTAGTTACTCACTGGCATGCACCGTC
CACCCACCATCCCTGCACACATTCACACCACCACAGACTCAAGACGACAA
GGCGTGGCACTGCTGCTACGCTGGCTGCGACCTCTTCTTCACCTCCGGCT
TGGAGTGTGCGCGCCCTCTCGTCTTGTCACGTTCTCTGTTGACGAAGACC
ACCATCATCATCAGGAGTCTCGCCAAGTCAAGGCCTTAATACTCCTCTCA
ACGACCATAAACAACCAGCAGTGGTACTGAGATAACAATGCCAAGAAGAA
GAGTCACCCACAGCACCTCATCTCTTGCCCCTCCTCCCCTCTCCCGCTCC
ACGTCCTCCTCTTCGTGGTTGTCGTCCTCCTCCACCTTCTCCTCTAAGCC
CAGGCGCTCCCTCTGCATGGGCAGCCTCCTCGTGCTTGCCATCCTTCTCA
TTGGCGTGATCACTCTAATCAGCGCAGAGGTACGTGCAATATGAAGCCCC
CCTTTTACCTCCCTTCTTCCCTCCGTTTTCCCCTCCTCTCCCTCTTCCTC
TACTCCCTGTCGACTCCTCAGCTCATCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTCCCCTCCCTCTCCCTCACAGAATGTGCTCCCCGACAGCGGGAGC
GGGGATGGCAGCGTCGTTTTCTTTCGGGCAGACAACTTCGGGGATGACGC
TTATCCAGCCCTGGGGGAGGAGGGAGGGAAGGGAAAAAGGATCGAGGGGG
CGGCAGAGGTTATGGCCTCCGATGTAGACGAGGTGAGGAGGAGGGAAGGA
GGGAGAGAGAAAATTGTCCCGTCAAACAGGGATGCCGCATACTACAAGTC
ATCTCACACCTCATTCCATCTTCTCCCTCCCTCCCTCCCTCCCTCCCATC
CTCCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTGCAGTCG
GGTATGCCCATCCTGGGCTTCTGGCCCGCATTTTTTAACTCCCTGTCCAT
GATCCTCGTTACAGAGCTGGGGGACAAGACATTTTTCATCGCTGCCGTGC
TGGCCATGCGCTACGACCGACTCCTCATCTTCGGCGGGGCCATTGGTAAG
TGGGAGGGGGAGAGAGAGGGAGGGAGGGAGGGAGGGAGGAAGGAATGCAT
TAAAGAACTTGACCTTGATATCTCTTATTGGTGCTCACAGCTCCTTGTTC
CTCCGTGCCTCCCTCCCTCCCCTGCCTCCCTCCCTCTGTGCCTCCCTTCC
TCCCTCCCTCCCTCTCTCTCCGACGCTGCCTGTCTTTCTGTTCAGGGGCC
CTAATCCTGATGACCATCCTCTCGGCCGCCATCGGCAACGTCCTCCCTAA
TGTACTCCCCCGGAAATACACACATTACGCCTCAGCGGTGCGTCCATCCC
TCCCTCGCTCCCTCCCTCGCTCCCTCCCTCGCTCCCTCCCTCTTCCTCGA
CTCCCCATCGTTCTCCCTCGGCCCATCCCTCCTCCCTTTTTCCCTTCCTC
CCTCCCTCCCTCAGTTCCTCTTCCTCTACTTTGGCATCAAGCTCCTCATG
GAAGCTCAGGGCATGGAGGGTTCTGGCCCCAGCGACGAGCTCCAGGAGGT
GGAGGAGGAACTACTTCACAAGAAAGAAGGTACTTTCCCCTTCCCTCCCT
CCCTTCCTCCCTCCCTTCCTCCCTCCCTCCGTCCCCTCCCTCCGTCCCTC
CCTCCCTCCCGCTGTTTTCCTTTCTTTTCGTTCTCGCCTTTGCTCACCTG
ACGCAACGGTCGTGCCGTTTCTACCATATTTCATCCTCCCTCCCTCCCTC
CCTCCCTTCCCCCAGACGTATGCCATTCCCCCCACTCGACTGAGATGACG
CACCTCGAGAATGGCAGCAGCAGCAACAACAGCAGCAACAACAGCGGCA

Coding sequence (CDS) from alignment at scaffold_6:1209858..1211756+

>mRNA_3768 ID=mRNA_3768|Name=jgi.p|Nanoce1779_2|373269|organism=Nannochloropsis oceanica|type=CDS|length=4125bp|location=Sequence derived from alignment at scaffold_6:1209858..1211756+ (Nannochloropsis oceanica)
ATGCCAAGAAGAAGAGTCACCCACAGCACCTCATCTCTTGCCCCTCCTCC
CCTCTCCCGCTCCACGTCCTCCTCTTCGTGGTTGTCGTCCTCCTCCACCT
TCTCCTCTAAGCCCAGGCGCTCCCTCTGCATGGGCAGCCTCCTCGTGCTT
GCCATCCTTCTCATTGGCGTGATCACTCTAATCAGCGCAGAGAATGTGCT
CCCCGACAGCGGGAGCGGGGATGGCAGCGTCGTTTTCTTTCGGGCAGACA
ACTTCGGGGATGACGCTTATCCAGCCCTGGGGGAGGAGGGAGGGAAGGGA
AAAAGGATCGAGGGGGCGGCAGAGGTTATGGCCTCCGATGTAGACGAGTC
GGGTATGCCCATCCTGGGCTTCTGGCCCGCATTTTTTAACTCCCTGTCCA
TGATCCTCGTTACAGAGCTGGGGGACAAGACATTTTTCATCGCTGCCGTG
CTGGCCATGCGCTACGACCGACTCCTCATCTTCGGCGGGGCCATTGGGGC
CCTAATCCTGATGACCATCCTCTCGGCCGCCATCGGCAACGTCCTCCCTA
ATGTACTCCCCCGGAAATACACACATTACGCCTCAGCGTTCCTCTTCCTC
TACTTTGGCATCAAGCTCCTCATGGAAGCTCAGGGCATGGAGGGTTCTGG
CCCCAGCGACGAGCTCCAGGAGGTGGAGGAGGAACTACTTCACAAGAAAG
AAGGTACTTTCCCCTTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCC
CTCCGTCCCCTCCCTCCGTCCCTCCCTCCCTCCCGCTGTTTTCCTTTCTT
TTCGTTCTCGCCTTTGCTCACCTGAATGCCAAGAAGAAGAGTCACCCACA
GCACCTCATCTCTTGCCCCTCCTCCCCTCTCCCGCTCCACGTCCTCCTCT
TCGTGGTTGTCGTCCTCCTCCACCTTCTCCTCTAAGCCCAGGCGCTCCCT
CTGCATGGGCAGCCTCCTCGTGCTTGCCATCCTTCTCATTGGCGTGATCA
CTCTAATCAGCGCAGAGAATGTGCTCCCCGACAGCGGGAGCGGGGATGGC
AGCGTCGTTTTCTTTCGGGCAGACAACTTCGGGGATGACGCTTATCCAGC
CCTGGGGGAGGAGGGAGGGAAGGGAAAAAGGATCGAGGGGGCGGCAGAGG
TTATGGCCTCCGATGTAGACGAGTCGGGTATGCCCATCCTGGGCTTCTGG
CCCGCATTTTTTAACTCCCTGTCCATGATCCTCGTTACAGAGCTGGGGGA
CAAGACATTTTTCATCGCTGCCGTGCTGGCCATGCGCTACGACCGACTCC
TCATCTTCGGCGGGGCCATTGGGGCCCTAATCCTGATGACCATCCTCTCG
GCCGCCATCGGCAACGTCCTCCCTAATGTACTCCCCCGGAAATACACACA
TTACGCCTCAGCGTTCCTCTTCCTCTACTTTGGCATCAAGCTCCTCATGG
AAGCTCAGGGCATGGAGGGTTCTGGCCCCAGCGACGAGCTCCAGGAGGTG
GAGGAGGAACTACTTCACAAGAAAGAAGGTACTTTCCCCTTCCCTCCCTC
CCTTCCTCCCTCCCTTCCTCCCTCCCTCCGTCCCCTCCCTCCGTCCCTCC
CTCCCTCCCGCTGTTTTCCTTTCTTTTCGTTCTCGCCTTTGCTCACCTGA
ATGCCAAGAAGAAGAGTCACCCACAGCACCTCATCTCTTGCCCCTCCTCC
CCTCTCCCGCTCCACGTCCTCCTCTTCGTGGTTGTCGTCCTCCTCCACCT
TCTCCTCTAAGCCCAGGCGCTCCCTCTGCATGGGCAGCCTCCTCGTGCTT
GCCATCCTTCTCATTGGCGTGATCACTCTAATCAGCGCAGAGAATGTGCT
CCCCGACAGCGGGAGCGGGGATGGCAGCGTCGTTTTCTTTCGGGCAGACA
ACTTCGGGGATGACGCTTATCCAGCCCTGGGGGAGGAGGGAGGGAAGGGA
AAAAGGATCGAGGGGGCGGCAGAGGTTATGGCCTCCGATGTAGACGAGTC
GGGTATGCCCATCCTGGGCTTCTGGCCCGCATTTTTTAACTCCCTGTCCA
TGATCCTCGTTACAGAGCTGGGGGACAAGACATTTTTCATCGCTGCCGTG
CTGGCCATGCGCTACGACCGACTCCTCATCTTCGGCGGGGCCATTGGGGC
CCTAATCCTGATGACCATCCTCTCGGCCGCCATCGGCAACGTCCTCCCTA
ATGTACTCCCCCGGAAATACACACATTACGCCTCAGCGTTCCTCTTCCTC
TACTTTGGCATCAAGCTCCTCATGGAAGCTCAGGGCATGGAGGGTTCTGG
CCCCAGCGACGAGCTCCAGGAGGTGGAGGAGGAACTACTTCACAAGAAAG
AAGGTACTTTCCCCTTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCC
CTCCGTCCCCTCCCTCCGTCCCTCCCTCCCTCCCGCTGTTTTCCTTTCTT
TTCGTTCTCGCCTTTGCTCACCTGAATGCCAAGAAGAAGAGTCACCCACA
GCACCTCATCTCTTGCCCCTCCTCCCCTCTCCCGCTCCACGTCCTCCTCT
TCGTGGTTGTCGTCCTCCTCCACCTTCTCCTCTAAGCCCAGGCGCTCCCT
CTGCATGGGCAGCCTCCTCGTGCTTGCCATCCTTCTCATTGGCGTGATCA
CTCTAATCAGCGCAGAGAATGTGCTCCCCGACAGCGGGAGCGGGGATGGC
AGCGTCGTTTTCTTTCGGGCAGACAACTTCGGGGATGACGCTTATCCAGC
CCTGGGGGAGGAGGGAGGGAAGGGAAAAAGGATCGAGGGGGCGGCAGAGG
TTATGGCCTCCGATGTAGACGAGTCGGGTATGCCCATCCTGGGCTTCTGG
CCCGCATTTTTTAACTCCCTGTCCATGATCCTCGTTACAGAGCTGGGGGA
CAAGACATTTTTCATCGCTGCCGTGCTGGCCATGCGCTACGACCGACTCC
TCATCTTCGGCGGGGCCATTGGGGCCCTAATCCTGATGACCATCCTCTCG
GCCGCCATCGGCAACGTCCTCCCTAATGTACTCCCCCGGAAATACACACA
TTACGCCTCAGCGTTCCTCTTCCTCTACTTTGGCATCAAGCTCCTCATGG
AAGCTCAGGGCATGGAGGGTTCTGGCCCCAGCGACGAGCTCCAGGAGGTG
GAGGAGGAACTACTTCACAAGAAAGAAGGTACTTTCCCCTTCCCTCCCTC
CCTTCCTCCCTCCCTTCCTCCCTCCCTCCGTCCCCTCCCTCCGTCCCTCC
CTCCCTCCCGCTGTTTTCCTTTCTTTTCGTTCTCGCCTTTGCTCACCTGA
ATGCCAAGAAGAAGAGTCACCCACAGCACCTCATCTCTTGCCCCTCCTCC
CCTCTCCCGCTCCACGTCCTCCTCTTCGTGGTTGTCGTCCTCCTCCACCT
TCTCCTCTAAGCCCAGGCGCTCCCTCTGCATGGGCAGCCTCCTCGTGCTT
GCCATCCTTCTCATTGGCGTGATCACTCTAATCAGCGCAGAGAATGTGCT
CCCCGACAGCGGGAGCGGGGATGGCAGCGTCGTTTTCTTTCGGGCAGACA
ACTTCGGGGATGACGCTTATCCAGCCCTGGGGGAGGAGGGAGGGAAGGGA
AAAAGGATCGAGGGGGCGGCAGAGGTTATGGCCTCCGATGTAGACGAGTC
GGGTATGCCCATCCTGGGCTTCTGGCCCGCATTTTTTAACTCCCTGTCCA
TGATCCTCGTTACAGAGCTGGGGGACAAGACATTTTTCATCGCTGCCGTG
CTGGCCATGCGCTACGACCGACTCCTCATCTTCGGCGGGGCCATTGGGGC
CCTAATCCTGATGACCATCCTCTCGGCCGCCATCGGCAACGTCCTCCCTA
ATGTACTCCCCCGGAAATACACACATTACGCCTCAGCGTTCCTCTTCCTC
TACTTTGGCATCAAGCTCCTCATGGAAGCTCAGGGCATGGAGGGTTCTGG
CCCCAGCGACGAGCTCCAGGAGGTGGAGGAGGAACTACTTCACAAGAAAG
AAGGTACTTTCCCCTTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCC
CTCCGTCCCCTCCCTCCGTCCCTCCCTCCCTCCCGCTGTTTTCCTTTCTT
TTCGTTCTCGCCTTTGCTCACCTGA

Synonyms

Publications