jgi.p|Nanoce1779_2|373186, mRNA_3766 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|373186
Unique Name	mRNA_3766
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1090
Alignment location	scaffold_6:1203264..1205463 -

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Properties


Property Name	Value
TranscriptId	373272
Track	FilteredModels2
ProteinId	373186

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1203264..1205463 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|373186	gene_3766	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|373186	mRNA_3766-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3766	CDS_3766	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1203264..1205463-
coding sequence from alignment at scaffold_6:1203264..1205463-

mRNA sequence

>mRNA_3766 ID=mRNA_3766|Name=jgi.p|Nanoce1779_2|373186|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp
GTGTGGGTGAGACTTGACAGGAGGCAGGGGAAGTGAAAAGAAGAACGACT
GCTGCGTTCGATCGCCGATAGGAAATGGAGAGCCACTTGTCGCTTGCAAG
GGTTGCTTTCAGTAAAGCGGGGTGGCACTCAATAAACCACGGCACGGCCG
GGCACAATATTGATGAGCCCGAAATCCTGTTTGTGATTTAGTACAGTGCC
ATGGGGAGGGGAGCGTGTAGAGAGTGTTTGGGCATCATGCGGTGATGAAA
GATGGACCGGCTGTTGATACGCCGCACAAGCCTACAAAGCATGCACCCCA
CCAATTTTAAACGCCATAGGCAAGCATTACCCACAGATCTCTGCCTACTG
CTTTCTCCTTTTCCGCGTCTTGGTTTTTTTGGGGAACAATCTTTGGCCTT
TGAGATTGAGGCAGGCACTCTCGGGCTCCTTCACAAGCAGAGAGTCATGG
AGCACTTTGGAAGGAAGCAGGAGCAGGAGAAGGAGAAAGGGGATAACGAG
GCGGAGGCGGAATGGGAAGAGGAGGCCGGGGGAGGAGGCGAGAGCACAGC
TTTGTTCGAAATGGAGGCCACGCAGCCGAGTATTGGCGAGAGCGACACCA
GCAGCACCGGTGGTAGTAGATGGAGCACGAGAAGAATACGACCGAGGGAG
GGGAGCAGTGGGGCCAGCACGCGCAGAAGACGCTCGGAACCACCTCTTCC
CTCCTCCTTTACTGGTGCCGCTGCCTCCTCTTCCCCTCAAGCAGAGTACC
ACTTGCTGAGACCCGCCTCTCCTTCAAATCCTGTTCCTCTCCCTTCCTTG
GGAGAAGGAGGAGGAGAGGGAGGAGGGGAAAGAGAGAAATGGTATTTGGA
CCCGACGGAGTCACTTTTGAGGGGGAGTGAGAGCATGGATAGCTCCAGGC
GCTTAAGCAGTGATAGGAGAGGGGGAAGGGGAGGGATTAGGCAACAGCGG
AGGAGGAAAATGAGGAAGAGGAGGAAAATGAGAAGGAGGAGGACGATGAA
GACGAGAAACAGCACCCGATGAGGCGGTTTTTTGTGTTGTGCGCCTACTA
CGCTATTCTCTCAGACATGTACTCCAAGAACCTCGGGCTC

protein sequence of jgi.p|Nanoce1779_2|373186

>mRNA_3766-protein ID=mRNA_3766-protein|Name=jgi.p|Nanoce1779_2|373186|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MDRLLIRRTSLQSMHPTNFKRHRQALPTDLCLLLSPFPRLGFFGEQSLAF
EIEAGTLGLLHKQRVMEHFGRKQEQEKEKGDNEAEAEWEEEAGGGGESTA
LFEMEATQPSIGESDTSSTGGSRWSTRRIRPREGSSGASTRRRRSEPPLP
SSFTGAAASSSPQAEYHLLRPASPSNPVPLPSLGEGGGEGGGEREKWYLD
PTESLLRGSESMDSSRRLSSDRRGGRGGIRQQRRRKMRKRRKMRRRRTMK
TRNSTR*

mRNA from alignment at scaffold_6:1203264..1205463-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3766 ID=mRNA_3766|Name=jgi.p|Nanoce1779_2|373186|organism=Nannochloropsis oceanica|type=mRNA|length=2200bp|location=Sequence derived from alignment at scaffold_6:1203264..1205463- (Nannochloropsis oceanica)
GTGTGGGTGAGACTTGACAGGAGGCAGGGGAAGTGAAAAGAAGAACGACT
GCTGCGTTCGATCGCCGATAGGAAATGGAGAGCCACTTGTCGCTTGCAAG
GGTTGCTTTCAGTAAAGCGGGGTGGCACTCAATAAACCACGGCACGGCCG
GGCACAATATTGATGAGCCCGAAATCCTGTTTGTGATTTAGTACAGTGCC
ATGGGGAGGGGAGCGTGTAGAGAGTGTTTGGGCATCATGCGGTGATGAAA
GATGGACCGGCTGTTGATACGCCGCACAAGCCTACAAAGCATGCACCCCA
CCAATTTTAAACGCCATAGGCAAGCATTACCCACAGATCTCTGCCTACTG
CTTTCTCCTTTTCCGCGTCTTGGTTTTTTTGGGGAACAATCTTTGGCCTT
TGAGATTGAGGCAGGCACTCTCGGGCTCCTTCACAAGCAGAGGTAACGTC
CGGCATGGGTAAGACATACACAAAGGCGAAATAAAAAGGATAGACAAGGA
AGTCACCGGCCGCATACAGAGTCATGGAGCACTTTGGAAGGAAGCAGGAG
CAGGAGAAGGAGAAAGGGGATAACGAGGCGGAGGCGGAATGGGAAGAGGA
GGCCGGGGGAGGAGGCGAGAGCACAGCTTTGTTCGAAATGGAGGCCACGC
AGCCGAGTATTGGCGAGAGCGACACCAGCAGCACCGGTGGTAGTAGATGG
AGCACGAGAAGAATACGACCGAGGGAGGGGAGCAGTGGGGCCAGGTATGG
AGGCGGAAAAGAAGGGAGGGAGAGATGGGGGGAGGGAGGGAGGGAGGGAG
GATGTATCTCTGACGTCAACTATCTATTTTTGATCATTGCGATAATCCTT
TTGGGAAAGCCATAGTATTTTTCGTCTCTCGTTTACAGCCGCGATCTCTC
ATTATCCACACTGCCATTCGGACCGATCTCTGCCTCCCTCCCGTGCCCCA
TTCCTCCCCCCCTCCCTCTTTGGTCTCCTCCCCACCTCCCAAAAAACAGC
ACGCGCAGAAGACGCTCGGAACCACCTCTTCCCTCCTCCTTTACTGGTGC
CGCTGCCTCCTCTTCCCCTCAAGCAGAGTACCACTTGCTGAGACCCGCCT
CTCCTTCAAATCCTGTTCCTCTCCCTTCCTTGGGAGAAGGAGGAGGAGAG
GGAGGAGGGGAAAGAGAGAAATGGTATTTGGACCCGACGGAGTCACTTTT
GAGGGGGAGTGAGAGCATGGATAGCTCCAGGCGCTTAAGCAGTGATAGGA
GAGGGGGAAGGGGAGGGATTAGGCAACAGCGGCTGAGGAATGTCCTTCAA
GGAGGAGCAAGTGAAGACGAGGACGAGGGGGAGGGGGAGGGGGAGGGGAA
AGAGGAGGAGGAAAATGAGGAAGAGGAGGAAAATGAGAAGGAGGAGGACG
ATGAAGACGAGAAACAGCACCCGATGAGGCGGTTTTTTGTGTTGTGCGCA
TGTACGCTCGTTGGCTTTGTCATGAACGTCATGGTCTCGGTGGTGGCGCC
CTTCTTCCCGCAGGTACCCGGAGGAGATGAGGGAGAGAGGGAGGAAGGGG
GGGAGGGAGAGGGGGCAGTAACCAAGCATCTGGTGAGTGAGTACTCACGC
GACATGCCTCTCTCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCG
TACATTCCTCCCTCTGTGGACCCTCTAGGAGGCCAAGGCCCGCACTGGCA
CGAGCAACACGGTGGTCGGTCTCATTTTTGCCGTCTTCCCCCTCACCAAC
CTCATCATCTGCCCCATCGTCAATATGGTACACGTCCGCTCGCCCTCCCT
CCCTCCCTCCCTCCTCACCGTCCTCAGCATTCCTCCCCCGCCCCCCTCTC
CCTCTCCCTCCCTTCCTCCCTCCCGCCAGGCCATCCGCCGGCTGGGACGA
AAGAACCTCCTCCTCGTCGGCCTCCTCACCCTCGGCGCCGCGACCATCGG
CTTCGGTCTCTCCTCCACCATTGCCGGCTGGACCTGCAGCCGAATCTTGC
AGGGGGCCGGGTCGGCAGCTGCGGGTGGGTAGAGGGAGGGAGGGAGGGAG
GGAGGAAGAAAGGGCACCTTCTCTCTTGTCGAACCGGTCAACCTCACTCT
CATCTACCATCTCCTCCCTCCCTCCCTCCCTCCCCCCCCTCCCTCAGGCG
CCACCTACTACGCTATTCTCTCAGACATGTACTCCAAGAACCTCGGGCTC

Coding sequence (CDS) from alignment at scaffold_6:1203264..1205463-

>mRNA_3766 ID=mRNA_3766|Name=jgi.p|Nanoce1779_2|373186|organism=Nannochloropsis oceanica|type=CDS|length=3084bp|location=Sequence derived from alignment at scaffold_6:1203264..1205463- (Nannochloropsis oceanica)
GAGGAGGAAAATGAGGAAGAGGAGGAAAATGAGAAGGAGGAGGACGATGA
AGACGAGAAACAGCACCCGATGACACGCGCAGAAGACGCTCGGAACCACC
TCTTCCCTCCTCCTTTACTGGTGCCGCTGCCTCCTCTTCCCCTCAAGCAG
AGTACCACTTGCTGAGACCCGCCTCTCCTTCAAATCCTGTTCCTCTCCCT
TCCTTGGGAGAAGGAGGAGGAGAGGGAGGAGGGGAAAGAGAGAAATGGTA
TTTGGACCCGACGGAGTCACTTTTGAGGGGGAGTGAGAGCATGGATAGCT
CCAGGCGCTTAAGCAGTGATAGGAGAGGGGGAAGGGGAGGGATTAGGCAA
CAGCGAGTCATGGAGCACTTTGGAAGGAAGCAGGAGCAGGAGAAGGAGAA
AGGGGATAACGAGGCGGAGGCGGAATGGGAAGAGGAGGCCGGGGGAGGAG
GCGAGAGCACAGCTTTGTTCGAAATGGAGGCCACGCAGCCGAGTATTGGC
GAGAGCGACACCAGCAGCACCGGTGGTAGTAGATGGAGCACGAGAAGAAT
ACGACCGAGGGAGGGGAGCAGTGGGGCCAGATGGACCGGCTGTTGATACG
CCGCACAAGCCTACAAAGCATGCACCCCACCAATTTTAAACGCCATAGGC
AAGCATTACCCACAGATCTCTGCCTACTGCTTTCTCCTTTTCCGCGTCTT
GGTTTTTTTGGGGAACAATCTTTGGCCTTTGAGATTGAGGCAGGCACTCT
CGGGCTCCTTCACAAGCAGAGGAGGAGGAAAATGAGGAAGAGGAGGAAAA
TGAGAAGGAGGAGGACGATGAAGACGAGAAACAGCACCCGATGACACGCG
CAGAAGACGCTCGGAACCACCTCTTCCCTCCTCCTTTACTGGTGCCGCTG
CCTCCTCTTCCCCTCAAGCAGAGTACCACTTGCTGAGACCCGCCTCTCCT
TCAAATCCTGTTCCTCTCCCTTCCTTGGGAGAAGGAGGAGGAGAGGGAGG
AGGGGAAAGAGAGAAATGGTATTTGGACCCGACGGAGTCACTTTTGAGGG
GGAGTGAGAGCATGGATAGCTCCAGGCGCTTAAGCAGTGATAGGAGAGGG
GGAAGGGGAGGGATTAGGCAACAGCGAGTCATGGAGCACTTTGGAAGGAA
GCAGGAGCAGGAGAAGGAGAAAGGGGATAACGAGGCGGAGGCGGAATGGG
AAGAGGAGGCCGGGGGAGGAGGCGAGAGCACAGCTTTGTTCGAAATGGAG
GCCACGCAGCCGAGTATTGGCGAGAGCGACACCAGCAGCACCGGTGGTAG
TAGATGGAGCACGAGAAGAATACGACCGAGGGAGGGGAGCAGTGGGGCCA
GATGGACCGGCTGTTGATACGCCGCACAAGCCTACAAAGCATGCACCCCA
CCAATTTTAAACGCCATAGGCAAGCATTACCCACAGATCTCTGCCTACTG
CTTTCTCCTTTTCCGCGTCTTGGTTTTTTTGGGGAACAATCTTTGGCCTT
TGAGATTGAGGCAGGCACTCTCGGGCTCCTTCACAAGCAGAGGAGGAGGA
AAATGAGGAAGAGGAGGAAAATGAGAAGGAGGAGGACGATGAAGACGAGA
AACAGCACCCGATGACACGCGCAGAAGACGCTCGGAACCACCTCTTCCCT
CCTCCTTTACTGGTGCCGCTGCCTCCTCTTCCCCTCAAGCAGAGTACCAC
TTGCTGAGACCCGCCTCTCCTTCAAATCCTGTTCCTCTCCCTTCCTTGGG
AGAAGGAGGAGGAGAGGGAGGAGGGGAAAGAGAGAAATGGTATTTGGACC
CGACGGAGTCACTTTTGAGGGGGAGTGAGAGCATGGATAGCTCCAGGCGC
TTAAGCAGTGATAGGAGAGGGGGAAGGGGAGGGATTAGGCAACAGCGAGT
CATGGAGCACTTTGGAAGGAAGCAGGAGCAGGAGAAGGAGAAAGGGGATA
ACGAGGCGGAGGCGGAATGGGAAGAGGAGGCCGGGGGAGGAGGCGAGAGC
ACAGCTTTGTTCGAAATGGAGGCCACGCAGCCGAGTATTGGCGAGAGCGA
CACCAGCAGCACCGGTGGTAGTAGATGGAGCACGAGAAGAATACGACCGA
GGGAGGGGAGCAGTGGGGCCAGATGGACCGGCTGTTGATACGCCGCACAA
GCCTACAAAGCATGCACCCCACCAATTTTAAACGCCATAGGCAAGCATTA
CCCACAGATCTCTGCCTACTGCTTTCTCCTTTTCCGCGTCTTGGTTTTTT
TGGGGAACAATCTTTGGCCTTTGAGATTGAGGCAGGCACTCTCGGGCTCC
TTCACAAGCAGAGGAGGAGGAAAATGAGGAAGAGGAGGAAAATGAGAAGG
AGGAGGACGATGAAGACGAGAAACAGCACCCGATGACACGCGCAGAAGAC
GCTCGGAACCACCTCTTCCCTCCTCCTTTACTGGTGCCGCTGCCTCCTCT
TCCCCTCAAGCAGAGTACCACTTGCTGAGACCCGCCTCTCCTTCAAATCC
TGTTCCTCTCCCTTCCTTGGGAGAAGGAGGAGGAGAGGGAGGAGGGGAAA
GAGAGAAATGGTATTTGGACCCGACGGAGTCACTTTTGAGGGGGAGTGAG
AGCATGGATAGCTCCAGGCGCTTAAGCAGTGATAGGAGAGGGGGAAGGGG
AGGGATTAGGCAACAGCGAGTCATGGAGCACTTTGGAAGGAAGCAGGAGC
AGGAGAAGGAGAAAGGGGATAACGAGGCGGAGGCGGAATGGGAAGAGGAG
GCCGGGGGAGGAGGCGAGAGCACAGCTTTGTTCGAAATGGAGGCCACGCA
GCCGAGTATTGGCGAGAGCGACACCAGCAGCACCGGTGGTAGTAGATGGA
GCACGAGAAGAATACGACCGAGGGAGGGGAGCAGTGGGGCCAGATGGACC
GGCTGTTGATACGCCGCACAAGCCTACAAAGCATGCACCCCACCAATTTT
AAACGCCATAGGCAAGCATTACCCACAGATCTCTGCCTACTGCTTTCTCC
TTTTCCGCGTCTTGGTTTTTTTGGGGAACAATCTTTGGCCTTTGAGATTG
AGGCAGGCACTCTCGGGCTCCTTCACAAGCAGAG

Synonyms

Publications