jgi.p|Nanoce1779_2|583365, mRNA_3764 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583365
Unique NamemRNA_3764
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length737
Alignment locationscaffold_6:1199235..1199971 +

Link to JBrowse

Properties
Property NameValue
TranscriptId583451
TrackFilteredModels2
ProteinId583365
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1199235..1199971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583365gene_3764Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583365mRNA_3764-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3764CDS_3764Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3764 ID=mRNA_3764|Name=jgi.p|Nanoce1779_2|583365|organism=Nannochloropsis oceanica|type=mRNA|length=737bp
GTAAACCTTCCGCATGTTTTCATTTCAATCCTTCATTTTAAATCGTCAAA
ACCGATACGTATTCAACACAGCCCCTCCCCTACCCCTCCACGCCCTCCTA
CCTATACACGTTTTTAAAAAAATATGTACATGCGTCCCTTTCTACGCCCT
CTCACTCATCCGTTTCCGTCATTTTCCTTCCATAAGAAGGAGGGGAGAGC
TCCTCTTGCTGCCGCTGCTGCTGGTAGTGTCCTCGTCCTCCTTCTCCTCC
CGCGCGTCCTCCCTCTCCACGGCGGCTTTCCTCGGGCGTGGCTGGAAAGG
AGGAGTAGCTACAGGTCAAGGGGGGGGAGTGAGAGGAGGAGGGAGCAAGA
AGGAAGGAGGAAGGAGAGGGGGCAGGATGGGGAGGAGGAGCGACGAGGAG
GGAGTTGGAGGTGGAGGAGGAAAAGGAAGGGGAGGGAGGAGTGGAGGAGT
AGGAAGAGAAGTGCACTAAAGAGAGCTTCTGTTGATGAGAATGTGGTGAG
AGGGAAAATTGACAGAGAGTGAGAGAGAAAGAGTGGGCAAGTGAGAGAGT
GTGAGAGTATGGGGGTGTGAGAGTTATCAAAGACAGTCAAAGACTTTTGC
CAACCCACTATACAGAAGAGTGGCAAGACATTTATTGCCTCCAAGCAGAT
ATCTAGAGCCCTTCCCCCCTTCCTTCTCTCCCTCCTTCCCTCTCTCGTTC
CCCCCTTCGCTTACGTGGCGTGGATCTCGGTGGTGCG
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protein sequence of jgi.p|Nanoce1779_2|583365

>mRNA_3764-protein ID=mRNA_3764-protein|Name=jgi.p|Nanoce1779_2|583365|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MFSFQSFILNRQNRYVFNTAPPLPLHALLPIHVFKKICTCVPFYALSLIR
FRHFPSIRRRGELLLLPLLLVVSSSSFSSRASSLSTAAFLGRGWKGGVAT
GQGGGVRGGGSKKEGGRRGGRMGRRSDEEGVGGGGGKGRGGRSGGVGREV
H*
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mRNA from alignment at scaffold_6:1199235..1199971+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3764 ID=mRNA_3764|Name=jgi.p|Nanoce1779_2|583365|organism=Nannochloropsis oceanica|type=mRNA|length=737bp|location=Sequence derived from alignment at scaffold_6:1199235..1199971+ (Nannochloropsis oceanica)
GTAAACCTTCCGCATGTTTTCATTTCAATCCTTCATTTTAAATCGTCAAA
ACCGATACGTATTCAACACAGCCCCTCCCCTACCCCTCCACGCCCTCCTA
CCTATACACGTTTTTAAAAAAATATGTACATGCGTCCCTTTCTACGCCCT
CTCACTCATCCGTTTCCGTCATTTTCCTTCCATAAGAAGGAGGGGAGAGC
TCCTCTTGCTGCCGCTGCTGCTGGTAGTGTCCTCGTCCTCCTTCTCCTCC
CGCGCGTCCTCCCTCTCCACGGCGGCTTTCCTCGGGCGTGGCTGGAAAGG
AGGAGTAGCTACAGGTCAAGGGGGGGGAGTGAGAGGAGGAGGGAGCAAGA
AGGAAGGAGGAAGGAGAGGGGGCAGGATGGGGAGGAGGAGCGACGAGGAG
GGAGTTGGAGGTGGAGGAGGAAAAGGAAGGGGAGGGAGGAGTGGAGGAGT
AGGAAGAGAAGTGCACTAAAGAGAGCTTCTGTTGATGAGAATGTGGTGAG
AGGGAAAATTGACAGAGAGTGAGAGAGAAAGAGTGGGCAAGTGAGAGAGT
GTGAGAGTATGGGGGTGTGAGAGTTATCAAAGACAGTCAAAGACTTTTGC
CAACCCACTATACAGAAGAGTGGCAAGACATTTATTGCCTCCAAGCAGAT
ATCTAGAGCCCTTCCCCCCTTCCTTCTCTCCCTCCTTCCCTCTCTCGTTC
CCCCCTTCGCTTACGTGGCGTGGATCTCGGTGGTGCG
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Coding sequence (CDS) from alignment at scaffold_6:1199235..1199971+

>mRNA_3764 ID=mRNA_3764|Name=jgi.p|Nanoce1779_2|583365|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_6:1199235..1199971+ (Nannochloropsis oceanica)
ATGTTTTCATTTCAATCCTTCATTTTAAATCGTCAAAACCGATACGTATT
CAACACAGCCCCTCCCCTACCCCTCCACGCCCTCCTACCTATACACGTTT
TTAAAAAAATATGTACATGCGTCCCTTTCTACGCCCTCTCACTCATCCGT
TTCCGTCATTTTCCTTCCATAAGAAGGAGGGGAGAGCTCCTCTTGCTGCC
GCTGCTGCTGGTAGTGTCCTCGTCCTCCTTCTCCTCCCGCGCGTCCTCCC
TCTCCACGGCGGCTTTCCTCGGGCGTGGCTGGAAAGGAGGAGTAGCTACA
GGTCAAGGGGGGGGAGTGAGAGGAGGAGGGAGCAAGAAGGAAGGAGGAAG
GAGAGGGGGCAGGATGGGGAGGAGGAGCGACGAGGAGGGAGTTGGAGGTG
GAGGAGGAAAAGGAAGGGGAGGGAGGAGTGGAGGAGTAGGAAGAGAAGTG
CACTAA
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Synonyms
Publications