jgi.p|Nanoce1779_2|583350, mRNA_3761 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583350
Unique NamemRNA_3761
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length408
Alignment locationscaffold_6:1191645..1192052 +

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Properties
Property NameValue
TranscriptId583436
TrackFilteredModels2
ProteinId583350
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1191645..1192052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583350gene_3761Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583350mRNA_3761-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3761CDS_3761Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3761 ID=mRNA_3761|Name=jgi.p|Nanoce1779_2|583350|organism=Nannochloropsis oceanica|type=mRNA|length=408bp
GTGCAACCGATTCATAGACAAATGCGAAGACAAGTGTTCACACAAGCGTG
CCTCCTCTCAGCATTACACACGAGGGAAAGCCTTCCAACAATAAATTGTT
GCACATTATTCCCTTATTATTGCCGAGTTTCAAATTGCTTTGGCAGGTCA
AGGAAATCATACAACTTCTTTCTCGTCTTTACTTGCTCATGCATTAAAAA
TTCTGGATTACTTGATTTTTGCCGCGCCCAATGAATGCCTTTCTTCCTTA
GTGGCTGTGAGACAGCAAGGTATTTGTTGGGGTATAGGAGGGTGGGAGGG
AGAAAAGGATGAGGGACAAACGCAAGACCTCGTCAAGTGAACACATCGAT
CATTTCACGCACCTCTTATTCTTTCTATTTCTATGGAAACACTGATCCAT
TCGTGACG
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protein sequence of jgi.p|Nanoce1779_2|583350

>mRNA_3761-protein ID=mRNA_3761-protein|Name=jgi.p|Nanoce1779_2|583350|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MRRQVFTQACLLSALHTRESLPTINCCTLFPYYCRVSNCFGRSRKSYNFF
LVFTCSCIKNSGLLDFCRAQ*
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mRNA from alignment at scaffold_6:1191645..1192052+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3761 ID=mRNA_3761|Name=jgi.p|Nanoce1779_2|583350|organism=Nannochloropsis oceanica|type=mRNA|length=408bp|location=Sequence derived from alignment at scaffold_6:1191645..1192052+ (Nannochloropsis oceanica)
GTGCAACCGATTCATAGACAAATGCGAAGACAAGTGTTCACACAAGCGTG
CCTCCTCTCAGCATTACACACGAGGGAAAGCCTTCCAACAATAAATTGTT
GCACATTATTCCCTTATTATTGCCGAGTTTCAAATTGCTTTGGCAGGTCA
AGGAAATCATACAACTTCTTTCTCGTCTTTACTTGCTCATGCATTAAAAA
TTCTGGATTACTTGATTTTTGCCGCGCCCAATGAATGCCTTTCTTCCTTA
GTGGCTGTGAGACAGCAAGGTATTTGTTGGGGTATAGGAGGGTGGGAGGG
AGAAAAGGATGAGGGACAAACGCAAGACCTCGTCAAGTGAACACATCGAT
CATTTCACGCACCTCTTATTCTTTCTATTTCTATGGAAACACTGATCCAT
TCGTGACG
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Coding sequence (CDS) from alignment at scaffold_6:1191645..1192052+

>mRNA_3761 ID=mRNA_3761|Name=jgi.p|Nanoce1779_2|583350|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_6:1191645..1192052+ (Nannochloropsis oceanica)
ATGCGAAGACAAGTGTTCACACAAGCGTGCCTCCTCTCAGCATTACACAC
GAGGGAAAGCCTTCCAACAATAAATTGTTGCACATTATTCCCTTATTATT
GCCGAGTTTCAAATTGCTTTGGCAGGTCAAGGAAATCATACAACTTCTTT
CTCGTCTTTACTTGCTCATGCATTAAAAATTCTGGATTACTTGATTTTTG
CCGCGCCCAATGA
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Synonyms
Publications