jgi.p|Nanoce1779_2|577141, mRNA_376 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577141
Unique NamemRNA_376
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2389
Alignment locationscaffold_3:935916..938304 -

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Properties
Property NameValue
TranscriptId577227
TrackFilteredModels2
ProteinId577141
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:935916..938304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577141gene_376Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577141mRNA_376-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_376CDS_376Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_376 ID=mRNA_376|Name=jgi.p|Nanoce1779_2|577141|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp
CAGGCCAATTTCATAAGCAGACAGGCAAGATCCACGCCATTACACTGTGG
CGGTGGCGTTAATGGCCATGCGGAGGGCCTTGACTGCCGCGGGGCCTCGA
ATCATATATGCTACGACTGCTCGTACTAGCACTAATTCCAGTACCCGGGT
CTTGCTGGAGCGCCTGCAGTGCGCTGTGGTCCGCCTCCACCAGCAATTTA
ATGCCCTGGTGGTCGTCCGGCTATTCGCTAGTGATGTCAACTGCTTGTTT
AATCGCACGTACAAGTGCTACGAGGAGGACTGGTGTGTGCCCACTTTGTC
CGCTGCGGCTATTCTAAGCGTGAGTCCCGCGACCACCATAACAACGACAG
AAGCCTCGACCGCTCTACAAACTCGGCGCCAACGATGGGCACGCTTGTGG
CGTGCCTTCATTCGAGGCTGCCAAGTGAGTCTGGTCCTGAGTCCGCTTCT
GGCGACTTTCCCATTTATGTACGTGACCCGCAGCGTCTTTCCCTGGTTCC
GCCGAAAATGGTGGACCTGCGCGCTGTGGTCCATCGAAGCGCTCGGGCCA
TGTATGGTCAAGTTTATGCAATGGGCTAGCACCCGCCGCGATATCTTGGC
AACTGAAGTCTGTGACTTGCTGGAGCCCATCCAATGGCAGACGCGGCCGC
ATACCTGGGCAAAGACCTTGCAAGCCCTTGCCACCCTCCGCTGTGATTGG
GAGAAGGTCCTTACCATCGACCAAGGCAATGGTGCGATGCTTGGTTCGGG
CTCAGTGGCACAGGTATATCGGGCAACCACCACAGTACAACCTGGAAGGG
AGGAAGGGGATCCTACTGCTCCTCCTCCCGCTCCTCGAGTGGTGGCAGTC
AAGGTGATCCATCCGGGAGTCAAGCGACAGATTGAGGCGGATTTGGAATT
GTTCAGGCTGGGGGCTTGGTTGGTGGAAATGACAGGGCATTTGCAATGGT
GGAGCGTCAGGGATTTCGTAGAGGAATTTGCGGAGATAATGCATATGCAA
TTGGATTTGAGGTCGGAAGCAAAGGCCTTGGATCGGTTCAGGGAGAATTT
CAAAGCAAGGACGGATATCGTCTTCCCGGAGCCATTATGGCCATTAGTGA
ATGAATTCGTCTTGGTAGAAGACTATGTAGGTGGGGTGCCCATTTCTCAG
ATTTTGAAGGATCCCGCGTGGCCCGTCGCGGAAAAAAAGGCCATTGCCCG
GTCAGGACTCGATGCTTTCCTCAAGATGGTTTTTTTGGATAATTTTGTCC
ATGGAGACTTGCACCCGGGGAATATTTTCGTCCACCCTGCGACGTCTGCG
CATAAAGGGAAGCCATATTTGACTTTTATTGATGCGGGAATCGTGACTGA
GCTTAGCTCGCAAGATCGTCGTAATTTTGTGGATCTGTTTTATGCCATTG
CCACGGGGAAGGGGGAGGCAGCGGGACGACTGATGATTGATCGGGCGAGG
GACCACGCGTGCGTAGACCCTGAGGGGTTTTCTAAGGGGATTGCACGGAT
TGTGGAGGAGGCGACGGCAGGGCACAATCTGCAGTTGGGTAAGATACGGG
TAGGATTTCTGATCCAGAAAGTTTTGGCGTTATGTATTCAGTATAAGGTC
AAGTTGGAGAGTAATTTCGCGTCAACACTTTTAGCGATTGGGGTATTGGA
GGGAGTAGGGCGAAGTCTGGACCCCAATCTGGATATTCTTACGGCGGCTA
CTCCGATAATTGTGAAGAGTCAGTACTTTCAGAGTAAGAAGGCATAACTG
AAAGTAGGGAGAGAGCAAGGGAGTGTAAAGTAAGGAAAGGAGCTGGGAAA
TTCAAGAGATAGGTAGAATTCTAGCGCAGAAGAGATGGACAAGAGATTGA
AAGGGGTGAGGGGAAGGGAGGGAGGAGTAGAGGTAGCGTCGTCCGTACGA
AAGCCACATACAATTTTGCCGCTACCTTGGGCACAAGGTACTCCACTGTC
TCGTCGACCCCGGCTTGCAGTTTGCGAGTAATAGCACCCCACTGTACATA
CTTACTTTGGCTTCCATGAAACAAAGAAACAGCAGAATCGAAATGGGATG
ATGTGCTCTCGGCGCACAAAGGGCGAGGATTCACATTTTGTTGCCAAATA
AATATCTTGTTTCGTGAAGTTATTTGTATGTTGCTATCGCTGAAGAAGAT
TTTGTGCTTATCATCACGAGATGATATATGACACATTTGAAGAAGAAACT
GATATTGATGCATGTACAATTCTCTTGTGTATTTACACACCAACAAAAAT
GCTGACATGCATGTCAGTTTCCCATTACATCTTGCCTTCGGTGAATGTGT
CAATCGCCATAAACATCTATGAAAAAAGGGTCCACGCCTCGTCATGACCC
GATGCAGTTACAGCTTAATCGTGCTCAGTATCGATTCAG
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protein sequence of jgi.p|Nanoce1779_2|577141

>mRNA_376-protein ID=mRNA_376-protein|Name=jgi.p|Nanoce1779_2|577141|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MAMRRALTAAGPRIIYATTARTSTNSSTRVLLERLQCAVVRLHQQFNALV
VVRLFASDVNCLFNRTYKCYEEDWCVPTLSAAAILSVSPATTITTTEAST
ALQTRRQRWARLWRAFIRGCQVSLVLSPLLATFPFMYVTRSVFPWFRRKW
WTCALWSIEALGPCMVKFMQWASTRRDILATEVCDLLEPIQWQTRPHTWA
KTLQALATLRCDWEKVLTIDQGNGAMLGSGSVAQVYRATTTVQPGREEGD
PTAPPPAPRVVAVKVIHPGVKRQIEADLELFRLGAWLVEMTGHLQWWSVR
DFVEEFAEIMHMQLDLRSEAKALDRFRENFKARTDIVFPEPLWPLVNEFV
LVEDYVGGVPISQILKDPAWPVAEKKAIARSGLDAFLKMVFLDNFVHGDL
HPGNIFVHPATSAHKGKPYLTFIDAGIVTELSSQDRRNFVDLFYAIATGK
GEAAGRLMIDRARDHACVDPEGFSKGIARIVEEATAGHNLQLGKIRVGFL
IQKVLALCIQYKVKLESNFASTLLAIGVLEGVGRSLDPNLDILTAATPII
VKSQYFQSKKA*
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mRNA from alignment at scaffold_3:935916..938304-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_376 ID=mRNA_376|Name=jgi.p|Nanoce1779_2|577141|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp|location=Sequence derived from alignment at scaffold_3:935916..938304- (Nannochloropsis oceanica)
CAGGCCAATTTCATAAGCAGACAGGCAAGATCCACGCCATTACACTGTGG
CGGTGGCGTTAATGGCCATGCGGAGGGCCTTGACTGCCGCGGGGCCTCGA
ATCATATATGCTACGACTGCTCGTACTAGCACTAATTCCAGTACCCGGGT
CTTGCTGGAGCGCCTGCAGTGCGCTGTGGTCCGCCTCCACCAGCAATTTA
ATGCCCTGGTGGTCGTCCGGCTATTCGCTAGTGATGTCAACTGCTTGTTT
AATCGCACGTACAAGTGCTACGAGGAGGACTGGTGTGTGCCCACTTTGTC
CGCTGCGGCTATTCTAAGCGTGAGTCCCGCGACCACCATAACAACGACAG
AAGCCTCGACCGCTCTACAAACTCGGCGCCAACGATGGGCACGCTTGTGG
CGTGCCTTCATTCGAGGCTGCCAAGTGAGTCTGGTCCTGAGTCCGCTTCT
GGCGACTTTCCCATTTATGTACGTGACCCGCAGCGTCTTTCCCTGGTTCC
GCCGAAAATGGTGGACCTGCGCGCTGTGGTCCATCGAAGCGCTCGGGCCA
TGTATGGTCAAGTTTATGCAATGGGCTAGCACCCGCCGCGATATCTTGGC
AACTGAAGTCTGTGACTTGCTGGAGCCCATCCAATGGCAGACGCGGCCGC
ATACCTGGGCAAAGACCTTGCAAGCCCTTGCCACCCTCCGCTGTGATTGG
GAGAAGGTCCTTACCATCGACCAAGGCAATGGTGCGATGCTTGGTTCGGG
CTCAGTGGCACAGGTATATCGGGCAACCACCACAGTACAACCTGGAAGGG
AGGAAGGGGATCCTACTGCTCCTCCTCCCGCTCCTCGAGTGGTGGCAGTC
AAGGTGATCCATCCGGGAGTCAAGCGACAGATTGAGGCGGATTTGGAATT
GTTCAGGCTGGGGGCTTGGTTGGTGGAAATGACAGGGCATTTGCAATGGT
GGAGCGTCAGGGATTTCGTAGAGGAATTTGCGGAGATAATGCATATGCAA
TTGGATTTGAGGTCGGAAGCAAAGGCCTTGGATCGGTTCAGGGAGAATTT
CAAAGCAAGGACGGATATCGTCTTCCCGGAGCCATTATGGCCATTAGTGA
ATGAATTCGTCTTGGTAGAAGACTATGTAGGTGGGGTGCCCATTTCTCAG
ATTTTGAAGGATCCCGCGTGGCCCGTCGCGGAAAAAAAGGCCATTGCCCG
GTCAGGACTCGATGCTTTCCTCAAGATGGTTTTTTTGGATAATTTTGTCC
ATGGAGACTTGCACCCGGGGAATATTTTCGTCCACCCTGCGACGTCTGCG
CATAAAGGGAAGCCATATTTGACTTTTATTGATGCGGGAATCGTGACTGA
GCTTAGCTCGCAAGATCGTCGTAATTTTGTGGATCTGTTTTATGCCATTG
CCACGGGGAAGGGGGAGGCAGCGGGACGACTGATGATTGATCGGGCGAGG
GACCACGCGTGCGTAGACCCTGAGGGGTTTTCTAAGGGGATTGCACGGAT
TGTGGAGGAGGCGACGGCAGGGCACAATCTGCAGTTGGGTAAGATACGGG
TAGGATTTCTGATCCAGAAAGTTTTGGCGTTATGTATTCAGTATAAGGTC
AAGTTGGAGAGTAATTTCGCGTCAACACTTTTAGCGATTGGGGTATTGGA
GGGAGTAGGGCGAAGTCTGGACCCCAATCTGGATATTCTTACGGCGGCTA
CTCCGATAATTGTGAAGAGTCAGTACTTTCAGAGTAAGAAGGCATAACTG
AAAGTAGGGAGAGAGCAAGGGAGTGTAAAGTAAGGAAAGGAGCTGGGAAA
TTCAAGAGATAGGTAGAATTCTAGCGCAGAAGAGATGGACAAGAGATTGA
AAGGGGTGAGGGGAAGGGAGGGAGGAGTAGAGGTAGCGTCGTCCGTACGA
AAGCCACATACAATTTTGCCGCTACCTTGGGCACAAGGTACTCCACTGTC
TCGTCGACCCCGGCTTGCAGTTTGCGAGTAATAGCACCCCACTGTACATA
CTTACTTTGGCTTCCATGAAACAAAGAAACAGCAGAATCGAAATGGGATG
ATGTGCTCTCGGCGCACAAAGGGCGAGGATTCACATTTTGTTGCCAAATA
AATATCTTGTTTCGTGAAGTTATTTGTATGTTGCTATCGCTGAAGAAGAT
TTTGTGCTTATCATCACGAGATGATATATGACACATTTGAAGAAGAAACT
GATATTGATGCATGTACAATTCTCTTGTGTATTTACACACCAACAAAAAT
GCTGACATGCATGTCAGTTTCCCATTACATCTTGCCTTCGGTGAATGTGT
CAATCGCCATAAACATCTATGAAAAAAGGGTCCACGCCTCGTCATGACCC
GATGCAGTTACAGCTTAATCGTGCTCAGTATCGATTCAG
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Coding sequence (CDS) from alignment at scaffold_3:935916..938304-

>mRNA_376 ID=mRNA_376|Name=jgi.p|Nanoce1779_2|577141|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at scaffold_3:935916..938304- (Nannochloropsis oceanica)
ATGGCCATGCGGAGGGCCTTGACTGCCGCGGGGCCTCGAATCATATATGC
TACGACTGCTCGTACTAGCACTAATTCCAGTACCCGGGTCTTGCTGGAGC
GCCTGCAGTGCGCTGTGGTCCGCCTCCACCAGCAATTTAATGCCCTGGTG
GTCGTCCGGCTATTCGCTAGTGATGTCAACTGCTTGTTTAATCGCACGTA
CAAGTGCTACGAGGAGGACTGGTGTGTGCCCACTTTGTCCGCTGCGGCTA
TTCTAAGCGTGAGTCCCGCGACCACCATAACAACGACAGAAGCCTCGACC
GCTCTACAAACTCGGCGCCAACGATGGGCACGCTTGTGGCGTGCCTTCAT
TCGAGGCTGCCAAGTGAGTCTGGTCCTGAGTCCGCTTCTGGCGACTTTCC
CATTTATGTACGTGACCCGCAGCGTCTTTCCCTGGTTCCGCCGAAAATGG
TGGACCTGCGCGCTGTGGTCCATCGAAGCGCTCGGGCCATGTATGGTCAA
GTTTATGCAATGGGCTAGCACCCGCCGCGATATCTTGGCAACTGAAGTCT
GTGACTTGCTGGAGCCCATCCAATGGCAGACGCGGCCGCATACCTGGGCA
AAGACCTTGCAAGCCCTTGCCACCCTCCGCTGTGATTGGGAGAAGGTCCT
TACCATCGACCAAGGCAATGGTGCGATGCTTGGTTCGGGCTCAGTGGCAC
AGGTATATCGGGCAACCACCACAGTACAACCTGGAAGGGAGGAAGGGGAT
CCTACTGCTCCTCCTCCCGCTCCTCGAGTGGTGGCAGTCAAGGTGATCCA
TCCGGGAGTCAAGCGACAGATTGAGGCGGATTTGGAATTGTTCAGGCTGG
GGGCTTGGTTGGTGGAAATGACAGGGCATTTGCAATGGTGGAGCGTCAGG
GATTTCGTAGAGGAATTTGCGGAGATAATGCATATGCAATTGGATTTGAG
GTCGGAAGCAAAGGCCTTGGATCGGTTCAGGGAGAATTTCAAAGCAAGGA
CGGATATCGTCTTCCCGGAGCCATTATGGCCATTAGTGAATGAATTCGTC
TTGGTAGAAGACTATGTAGGTGGGGTGCCCATTTCTCAGATTTTGAAGGA
TCCCGCGTGGCCCGTCGCGGAAAAAAAGGCCATTGCCCGGTCAGGACTCG
ATGCTTTCCTCAAGATGGTTTTTTTGGATAATTTTGTCCATGGAGACTTG
CACCCGGGGAATATTTTCGTCCACCCTGCGACGTCTGCGCATAAAGGGAA
GCCATATTTGACTTTTATTGATGCGGGAATCGTGACTGAGCTTAGCTCGC
AAGATCGTCGTAATTTTGTGGATCTGTTTTATGCCATTGCCACGGGGAAG
GGGGAGGCAGCGGGACGACTGATGATTGATCGGGCGAGGGACCACGCGTG
CGTAGACCCTGAGGGGTTTTCTAAGGGGATTGCACGGATTGTGGAGGAGG
CGACGGCAGGGCACAATCTGCAGTTGGGTAAGATACGGGTAGGATTTCTG
ATCCAGAAAGTTTTGGCGTTATGTATTCAGTATAAGGTCAAGTTGGAGAG
TAATTTCGCGTCAACACTTTTAGCGATTGGGGTATTGGAGGGAGTAGGGC
GAAGTCTGGACCCCAATCTGGATATTCTTACGGCGGCTACTCCGATAATT
GTGAAGAGTCAGTACTTTCAGAGTAAGAAGGCATAA
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Synonyms
Publications