jgi.p|Nanoce1779_2|583327, mRNA_3758 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583327
Unique Name	mRNA_3758
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1250
Alignment location	scaffold_6:1177723..1179634 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583413
Track	FilteredModels2
ProteinId	583327

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1177723..1179634 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583327	gene_3758	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583327	mRNA_3758-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3758	CDS_3758	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1177723..1179634+
coding sequence from alignment at scaffold_6:1177723..1179634+

mRNA sequence

>mRNA_3758 ID=mRNA_3758|Name=jgi.p|Nanoce1779_2|583327|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp
AGAAAATCGTATCAGACAGGCTACAACGGATATTACTTGATACATGAAAT
TTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCTGTCGAAC
ATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGAAATGTGG
CTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTCGCCATTT
CGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGCACTTCAA
CAGAAGTTTGATGTTCTCCAAAGAAGGTTTTGGCTGGAACCCCTCGAGCC
TATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAAGATGTCG
AAGACAAGGACCAGGTGACACCGTTTCTGCTGGCCAATTTCGTCGACGCT
TCGAACAAGACATTATACAGGCGTAGAATCTACATCGACTTGGGTATTAA
GGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTACCCGATTAAGT
TCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGACCAACGTGGCC
ACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTGCGGCAGAAAA
GATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAAGTGTACCACA
ATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCAAACGCGTGGC
CTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACGACTTTGTGGT
GCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTGGAGCGTATGA
TGGCTAATGGCACGTACAAGCTCATCGATGAGATATTCGTTGAGATCCAT
TACCGACATCCGGACATGCAACCATTCGGGTGGGACATTTTTGAACACTC
TCTCAGTGATGCGCAAGCTTTATTCACCAAGGCACGGGACATGGGAATTT
ACATCCACCCATGGCCATAAGTCTGTTTCTACAATGTCTGTTTCTACAAT
AGATCTTGCGTCAGGGAAAAAAGTTTCCAATTAAATGCAGCAAGTTTCTA
GGAAAAATAATCATATTATAGGTACATTTAGGACGTCCACTGCACACGTG
TACCCGGGGATGGGACCCTTTCAGAATCGCGAATATGACGGACGTAGTTC
AAAGAAATGTATTCAGACAACTCCAGCTGTAAGACGACACACCAAAGCAA
ACTCAAATCAAGCCTAGCAAAAGGCCAAGCACTTCTCGCTTAAACAACTA

protein sequence of jgi.p|Nanoce1779_2|583327

>mRNA_3758-protein ID=mRNA_3758-protein|Name=jgi.p|Nanoce1779_2|583327|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MKFYRALKHSKPKLWWLSNMLFGGILLGYVLYMKCGYIFQSNSSLGDPVL
AISSSDSIPKLKEEIKALQQKFDVLQRRFWLEPLEPIWQYRGKFYLGKTK
DVEDKDQVTPFLLANFVDASNKTLYRRRIYIDLGIKDFNSSLCWMMQNYP
IKFDAMYGFECERDMTNVATLRDPINRCISETAAEKMGYTTEGTMDTLKV
YHNFIGLDEDLETSPQTRGLSQFLKDIDIQEDDFVVLKMDVEGIEFSLLE
RMMANGTYKLIDEIFVEIHYRHPDMQPFGWDIFEHSLSDAQALFTKARDM
GIYIHPWP*

mRNA from alignment at scaffold_6:1177723..1179634+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3758 ID=mRNA_3758|Name=jgi.p|Nanoce1779_2|583327|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at scaffold_6:1177723..1179634+ (Nannochloropsis oceanica)
AGAAAATCGTATCAGACAGGCTACAACGGATATTACTTGATACATGAAAT
TTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCTGTCGAAC
ATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGAAATGTGG
CTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTCGCCATTT
CGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGCACTTCAA
CAGAAGTTTGATGTTCTCCAAAGAAGGTATGTGCACACCGCGTTAGAATA
CATTTCTATTTTGCCAGGAGCTGCTCTACGTGCGAAGAACGTAGTTGGCT
TCACCTGCATCATCGATCCGCATCTAGGTTTTGGCTGGAACCCCTCGAGC
CTATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAAGATGTC
GAAGACAAGGACCAGGTGAGCAGATATCCGCTCACTTACAAACCTTTCCA
ACAGGAAAAACTTCCGGTTACCAAGGCCATGAGTCCTCCCCGCTATAAAT
TCTTTCCAAGCCTTCCATCACTCGATAAGCCTCTCCACTATGTCCCGTTC
GTACGACGAACTCTCTGAGAATATCTTGACCTCTACATGTTATCATGGTA
GTATACGGGACACATTTTCCCCTAATCCCTAAACCTCTTCTTCCGACCAT
CAATATTTGTGCTTCCCACTTTAGGTGACACCGTTTCTGCTGGCCAATTT
CGTCGACGCTTCGAACAAGACATTATACAGGCGTAGAATCTACATCGACT
TGGGTATTAAGGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTAC
CCGATTAAGTTCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGAC
CAACGTGGCCACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTG
CGGCAGAAAAGATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAA
GTGTACCACAATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCA
AACGCGTGGCCTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACG
ACTTTGTGGTGCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTG
GAGCGTATGATGGCTAATGGCACGTACAAGCTCATCGATGAGGTACGCAC
GTTTGCAAGATAGAAGAGATATCTTGATGCGCATGCTTACAAATGAAAAA
ATTGAGATCATATATTAGTGTGTAAGGGAAACAGATGAGTACGCGACTCT
AGAGCCAATTGACGATGTTCACACTCTTTCATCAACATCATCGTACTCAT
ATTCACAGATATTCGTTGAGATCCATTACCGACATCCGGACATGCAACCA
TTCGGGTGGGACATTTTTGAACACTCTCTCAGTGATGCGCAAGCTTTATT
CACCAAGGCACGGGACATGGGAATTTACATCCACCCATGGCCATAAGTCT
GTTTCTACAATGTCTGTTTCTACAATAGATCTTGCGTCAGGGAAAAAAGT
TTCCAATTAAATGCAGCAAGTTTCTAGGAAAAATAATGTAAGTTTTGAAG
GATGGTAGTTGCACTCAGAACTGTGCCGGAGTGACAATTTTGTTTTGTCG
TGAGTTCACGTCTCGCTCTCTGTTAGGGTTATATTACTCCGCAATTTTCT
CATTTTCATTTCACATTCACCAGCATATTATAGGTACATTTAGGACGTCC
ACTGCACACGTGTACCCGGGGATGGGACCCTTTCAGAATCGCGAATATGA
CGGACGTAGTTCAAAGAAATGTATTCAGACAACTCCAGCTGTAAGACGAC
ACACCAAAGCAAACTCAAATCAAGCCTAGCAAAAGGCCAAGCACTTCTCG
CTTAAACAACTA

Coding sequence (CDS) from alignment at scaffold_6:1177723..1179634+

>mRNA_3758 ID=mRNA_3758|Name=jgi.p|Nanoce1779_2|583327|organism=Nannochloropsis oceanica|type=CDS|length=3708bp|location=Sequence derived from alignment at scaffold_6:1177723..1179634+ (Nannochloropsis oceanica)
ATGAAATTTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGTGGCT
GTCGAACATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATACATGA
AATGTGGCTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGTTCTC
GCCATTTCGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTAAGGC
ACTTCAACAGAAGTTTGATGTTCTCCAAAGAAGGTTTTGGCTGGAACCCC
TCGAGCCTATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGACAAAA
GATGTCGAAGACAAGGACCAGGTGACACCGTTTCTGCTGGCCAATTTCGT
CGACGCTTCGAACAAGACATTATACAGGCGTAGAATCTACATCGACTTGG
GTATTAAGGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTACCCG
ATTAAGTTCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGACCAA
CGTGGCCACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACTGCGG
CAGAAAAGATGGGCTACACCACAGAAGGAACGATGGATACTCTCAAAGTG
TACCACAATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGCAAAC
GCGTGGCCTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGACGACT
TTGTGGTGCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTTGGAG
CGTATGATGGCTAATGGCACGTACAAGCTCATCGATGAGATATTCGTTGA
GATCCATTACCGACATCCGGACATGCAACCATTCGGGTGGGACATTTTTG
AACACTCTCTCAGTGATGCGCAAGCTTTATTCACCAAGGCACGGGACATG
GGAATTTACATCCACCCATGGCCATAAATGAAATTTTATAGAGCTTTGAA
ACATAGCAAGCCCAAACTTTGGTGGCTGTCGAACATGCTGTTTGGCGGTA
TACTTCTGGGATATGTTCTATACATGAAATGTGGCTACATATTCCAGAGC
AACAGCAGCCTTGGTGATCCAGTTCTCGCCATTTCGTCAAGCGACTCAAT
ACCAAAGCTTAAAGAAGAAATTAAGGCACTTCAACAGAAGTTTGATGTTC
TCCAAAGAAGGTTTTGGCTGGAACCCCTCGAGCCTATTTGGCAGTACCGC
GGGAAGTTTTACCTGGGAAAGACAAAAGATGTCGAAGACAAGGACCAGGT
GACACCGTTTCTGCTGGCCAATTTCGTCGACGCTTCGAACAAGACATTAT
ACAGGCGTAGAATCTACATCGACTTGGGTATTAAGGATTTTAATTCGAGC
CTGTGCTGGATGATGCAAAATTACCCGATTAAGTTCGATGCTATGTATGG
GTTTGAATGTGAGAGAGACATGACCAACGTGGCCACCTTACGGGACCCTA
TAAATCGGTGCATCAGTGAAACTGCGGCAGAAAAGATGGGCTACACCACA
GAAGGAACGATGGATACTCTCAAAGTGTACCACAATTTCATCGGCCTGGA
TGAGGACTTGGAGACATCACCGCAAACGCGTGGCCTCAGCCAGTTTCTCA
AAGATATTGACATACAAGAAGACGACTTTGTGGTGCTCAAGATGGACGTT
GAAGGAATCGAGTTCAGTCTTTTGGAGCGTATGATGGCTAATGGCACGTA
CAAGCTCATCGATGAGATATTCGTTGAGATCCATTACCGACATCCGGACA
TGCAACCATTCGGGTGGGACATTTTTGAACACTCTCTCAGTGATGCGCAA
GCTTTATTCACCAAGGCACGGGACATGGGAATTTACATCCACCCATGGCC
ATAAATGAAATTTTATAGAGCTTTGAAACATAGCAAGCCCAAACTTTGGT
GGCTGTCGAACATGCTGTTTGGCGGTATACTTCTGGGATATGTTCTATAC
ATGAAATGTGGCTACATATTCCAGAGCAACAGCAGCCTTGGTGATCCAGT
TCTCGCCATTTCGTCAAGCGACTCAATACCAAAGCTTAAAGAAGAAATTA
AGGCACTTCAACAGAAGTTTGATGTTCTCCAAAGAAGGTTTTGGCTGGAA
CCCCTCGAGCCTATTTGGCAGTACCGCGGGAAGTTTTACCTGGGAAAGAC
AAAAGATGTCGAAGACAAGGACCAGGTGACACCGTTTCTGCTGGCCAATT
TCGTCGACGCTTCGAACAAGACATTATACAGGCGTAGAATCTACATCGAC
TTGGGTATTAAGGATTTTAATTCGAGCCTGTGCTGGATGATGCAAAATTA
CCCGATTAAGTTCGATGCTATGTATGGGTTTGAATGTGAGAGAGACATGA
CCAACGTGGCCACCTTACGGGACCCTATAAATCGGTGCATCAGTGAAACT
GCGGCAGAAAAGATGGGCTACACCACAGAAGGAACGATGGATACTCTCAA
AGTGTACCACAATTTCATCGGCCTGGATGAGGACTTGGAGACATCACCGC
AAACGCGTGGCCTCAGCCAGTTTCTCAAAGATATTGACATACAAGAAGAC
GACTTTGTGGTGCTCAAGATGGACGTTGAAGGAATCGAGTTCAGTCTTTT
GGAGCGTATGATGGCTAATGGCACGTACAAGCTCATCGATGAGATATTCG
TTGAGATCCATTACCGACATCCGGACATGCAACCATTCGGGTGGGACATT
TTTGAACACTCTCTCAGTGATGCGCAAGCTTTATTCACCAAGGCACGGGA
CATGGGAATTTACATCCACCCATGGCCATAAATGAAATTTTATAGAGCTT
TGAAACATAGCAAGCCCAAACTTTGGTGGCTGTCGAACATGCTGTTTGGC
GGTATACTTCTGGGATATGTTCTATACATGAAATGTGGCTACATATTCCA
GAGCAACAGCAGCCTTGGTGATCCAGTTCTCGCCATTTCGTCAAGCGACT
CAATACCAAAGCTTAAAGAAGAAATTAAGGCACTTCAACAGAAGTTTGAT
GTTCTCCAAAGAAGGTTTTGGCTGGAACCCCTCGAGCCTATTTGGCAGTA
CCGCGGGAAGTTTTACCTGGGAAAGACAAAAGATGTCGAAGACAAGGACC
AGGTGACACCGTTTCTGCTGGCCAATTTCGTCGACGCTTCGAACAAGACA
TTATACAGGCGTAGAATCTACATCGACTTGGGTATTAAGGATTTTAATTC
GAGCCTGTGCTGGATGATGCAAAATTACCCGATTAAGTTCGATGCTATGT
ATGGGTTTGAATGTGAGAGAGACATGACCAACGTGGCCACCTTACGGGAC
CCTATAAATCGGTGCATCAGTGAAACTGCGGCAGAAAAGATGGGCTACAC
CACAGAAGGAACGATGGATACTCTCAAAGTGTACCACAATTTCATCGGCC
TGGATGAGGACTTGGAGACATCACCGCAAACGCGTGGCCTCAGCCAGTTT
CTCAAAGATATTGACATACAAGAAGACGACTTTGTGGTGCTCAAGATGGA
CGTTGAAGGAATCGAGTTCAGTCTTTTGGAGCGTATGATGGCTAATGGCA
CGTACAAGCTCATCGATGAGATATTCGTTGAGATCCATTACCGACATCCG
GACATGCAACCATTCGGGTGGGACATTTTTGAACACTCTCTCAGTGATGC
GCAAGCTTTATTCACCAAGGCACGGGACATGGGAATTTACATCCACCCAT
GGCCATAA

Synonyms

Publications