jgi.p|Nanoce1779_2|583320, mRNA_3757 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583320
Unique Name	mRNA_3757
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1612
Alignment location	scaffold_6:1174711..1176694 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583406
Track	FilteredModels2
ProteinId	583320

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1174711..1176694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583320	gene_3757	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583320	mRNA_3757-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3757	CDS_3757	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1174711..1176694+
coding sequence from alignment at scaffold_6:1174711..1176694+

mRNA sequence

>mRNA_3757 ID=mRNA_3757|Name=jgi.p|Nanoce1779_2|583320|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp
TAGTGGTCGTCTTCCTTTTTGAGCTGAACGGAACTCGGAGGCCTCTAGAC
CATATTGCTTACTCTGAAATGCTCGCGCGGCAACGAAGCGCAAGGTAAGG
GACCGATACCTGTATACAGTACGAGGATACAAATGGCCAAAATGGTTACA
GATATTAATTTGAATTGTCCTTTATCTTGTCAGCATCCCTAGCACACTAG
AGATTCGTACAGCCATCGACGCACTAACCCATCAAGTGGAAAAGTTCCAA
GAACTGGAGGACAGGCTACAGGCGATGACTATCGATCTTCAAAAGACAGC
CGATGAGCTGGCCACCTACAAAGTCAAGGCTGAACACCAAGACAAATTAG
AGAATTTGGAGGATGTTACCCAGTCGCTTAGGATAGAAAACGAGCCGGAA
GTAAATGAGCTATTTACATGGTTTACGGATCGCCAAAAAGGTCCTGGGGC
ACACAAGTGGTCCACATATCTTGATGCCTATCACCGACACTTCAACCGAT
TTCGTACACAAGCCAAAATAACAATGGTAGAGGTGGGAGTGCAAAGCGGA
GGATCTATCGAAATGTGGCGTTCGTACTTCGGGGCCGACAAGCTCAACTA
TATAGGAATAGACATTAACCCCGAATGCAAACAGTTTGAAAAGGACGGAG
TTCGCATTGTTATTGGTAATCAAGGGGACCCTGCGTTCTGGGAGCAATTC
AAAAAAGAAATCCCGGACGAGCTGGACATTTTTGTCGACGACGGAGGACA
CACCATGAACCAGCAAATTGTAACATTTGATAAGATGTTTTGGGGAGTTC
GAGATGGTGGTATTTACCTATGCGAAGATTTGCACACGAGTTACTGGCAG
GAATATGAAGGTGGTTACCTCAACAACAATAGCATGATTGAGAAATCCAA
AACACTCATCGATACCATCAATGCTTGGCATTCAAAAGAAGCGGGTTTGC
AGGTGAATAGTTTGACACGGAACATTCGAGGATTGCACTTCTATGATTCC
ATGATTTTCATTGACAAACGTGCAACGGAACCGATGGAAAGAATGAAGTC
CGGTGATTATTGGATTGACGTATGAGATGCGGCTGGAGATGAGAATACCT
TGTCCCTCAAACAGGAACAGTGATTCAAGCCATGTTTGAGAAGCTGTCAG
TATACATGTTTCCGTAGCACATCAAACCAATGATTGCCTTTCCTATCTCT
ACATCCCAGAAGCTCGATCGACGCCGCGTAAATGATCTCTCCTCGTCAAT
CGTTTCGCAATATTTATTTTTCATGTCTAGAAATGGCTACGCGTCTGGGG
CGGCAAATGCTCATTTTTCGAGGTCCGAGTGAGTTTACTTATATAATCTA
TGTCTTTCTTTATAATCATATTCTCGTCGATGGGCTTTTGATCCCGCAAT
CGAGTTTCAATTACATTGACATAGTCGATGTGGACGCAATTCCAGGGTGC
AATCAACCCTAACGCAGCATCATCTCGGTCGAAAATGTCTCACCACAACT
GAAGAAAATAAAGCTATGCTGTTATAAAATAATCAGCAAGATGGATTTGT
TTACATTTCAATAACTGTCTCGCTGTTGCATATCTCTCTCCCAAAAAAAT
CGTATTGCCTGT

protein sequence of jgi.p|Nanoce1779_2|583320

>mRNA_3757-protein ID=mRNA_3757-protein|Name=jgi.p|Nanoce1779_2|583320|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MTIDLQKTADELATYKVKAEHQDKLENLEDVTQSLRIENEPEVNELFTWF
TDRQKGPGAHKWSTYLDAYHRHFNRFRTQAKITMVEVGVQSGGSIEMWRS
YFGADKLNYIGIDINPECKQFEKDGVRIVIGNQGDPAFWEQFKKEIPDEL
DIFVDDGGHTMNQQIVTFDKMFWGVRDGGIYLCEDLHTSYWQEYEGGYLN
NNSMIEKSKTLIDTINAWHSKEAGLQVNSLTRNIRGLHFYDSMIFIDKRA
TEPMERMKSGDYWIDV*

mRNA from alignment at scaffold_6:1174711..1176694+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3757 ID=mRNA_3757|Name=jgi.p|Nanoce1779_2|583320|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at scaffold_6:1174711..1176694+ (Nannochloropsis oceanica)
TAGTGGTCGTCTTCCTTTTTGAGCTGAACGGAACTCGGAGGCCTCTAGAC
CATATTGCTTACTCTGAAATGCTCGCGCGGCAACGAAGCGCAAGGTAAGG
GACCGATACCTGTATACAGTACGAGGATACAAATGGCCAAAATGGTTACA
GATATTAATTTGAATTGTCCTTTATCTTGTCAGCATCCCTAGCACACTAG
AGATTCGTACAGCCATCGACGCACTAACCCATCAAGTGGAAAAGTTCCAA
GAACTGGAGGACAGGCTACAGGCGATGACTATCGATCTTCAAAAGACAGC
CGATGAGCTGGCCACCTACAAAGTCAAGGCTGAACACCAAGACAAATTAG
AGAATTTGGAGGATGTTACCCAGTCGCTTAGGATAGAAAACGAGCCGGAA
GTAAATGAGCTATTTACATGGTTTACGGATCGCCAAAAAGGTCCTGGGGC
ACACAAGTGGTCCACATATCTTGATGCCTATCACCGACACTTCAACCGAT
TTCGTACACAAGCCAAAATAACAATGGTAGAGGTGGGAGTGCAAAGCGGA
GGATCTATCGAAATGTGGCGTTCGTACTTCGGGGCCGACAAGCTCAAGTA
AGCACCTTTGATATAATTTAATTTAGACTTTCTCCCCGCTCAACCTGCAA
GTAACTCAATTCTCTTGTTACTTTTCTCAGCTATATAGGAATAGACATTA
ACCCCGAATGCAAACAGTTTGAAAAGGACGGAGTTCGCATTGTTATTGGT
AATCAAGGGGACCCTGCGTTCTGGGAGCAATTCAAAAAAGAAATCCCGGA
CGAGCTGGACATTTTTGTCGACGACGGAGGACACACCATGAACCAGCAAA
TTGTAACATTTGATAAGATGTTTTGGGGAGTTCGAGATGGTGGTATTTAC
CTATGCGAAGATTTGCACACGAGTTACTGGCAGGAATATGAAGGTGGTTA
CCTCAACAACAATAGCATGATTGAGAAATCCAAAACACTCATCGATACCA
TCAATGCTTGGCATTCAAAAGAAGCGGGTTTGCAGGTAAGGGGTTAAATC
GCTAACCATATTCTATTTTTTTCAAGTACCTTCTCTCGAGGATTCGCGCA
GAAAATGATCCGAAAATAAGCTGGGGACGAAAAATCCGTCCCCAAAAAGT
ATCACCTTTTAGAAAATGAGATACTTGCAATACAATCACAAATTGCATAA
ATGCTCACTTATACCTCACCGGAATTTCGACAGGTGAATAGTTTGACACG
GAACATTCGAGGGTAAGTCATGGACCGAGACATGTAGGTTCGCGGTGCAA
TAGAAACGATACGTATACTCAAGTCTACTACTCTCCTTACGTTACACATA
TAGATTGCACTTCTATGATTCCATGATTTTCATTGACAAACGTGCAACGG
AACCGATGGAAAGAATGAAGTCCGGTGATTATTGGATTGACGTATGAGAT
GCGGCTGGAGATGAGAATACCTTGTCCCTCAAACAGGAACAGTGATTCAA
GCCATGTTTGAGAAGCTGTCAGTATACATGTTTCCGTAGCACATCAAACC
AATGATTGCCTTTCCTATCTCTACATCCCAGAAGCTCGATCGACGCCGCG
TAAATGATCTCTCCTCGTCAATCGTTTCGCAATATTTATTTTTCATGTCT
AGAAATGGCTACGCGTCTGGGGCGGCAAATGCTCATTTTTCGAGGTCCGA
GTGAGTTTACTTATATAATCTATGTCTTTCTTTATAATCATATTCTCGTC
GATGGGCTTTTGATCCCGCAATCGAGTTTCAATTACATTGACATAGTCGA
TGTGGACGCAATTCCAGGGTGCAATCAACCCTAACGCAGCATCATCTCGG
TCGAAAATGTCTCACCACAACTGAAGAAAATAAAGCTATGCTGTTATAAA
ATAATCAGCAAGATGGATTTGTTTACATTTCAATAACTGTCTCGCTGTTG
CATATCTCTCTCCCAAAAAAATCGTATTGCCTGT

Coding sequence (CDS) from alignment at scaffold_6:1174711..1176694+

>mRNA_3757 ID=mRNA_3757|Name=jgi.p|Nanoce1779_2|583320|organism=Nannochloropsis oceanica|type=CDS|length=3204bp|location=Sequence derived from alignment at scaffold_6:1174711..1176694+ (Nannochloropsis oceanica)
ATGACTATCGATCTTCAAAAGACAGCCGATGAGCTGGCCACCTACAAAGT
CAAGGCTGAACACCAAGACAAATTAGAGAATTTGGAGGATGTTACCCAGT
CGCTTAGGATAGAAAACGAGCCGGAAGTAAATGAGCTATTTACATGGTTT
ACGGATCGCCAAAAAGGTCCTGGGGCACACAAGTGGTCCACATATCTTGA
TGCCTATCACCGACACTTCAACCGATTTCGTACACAAGCCAAAATAACAA
TGGTAGAGGTGGGAGTGCAAAGCGGAGGATCTATCGAAATGTGGCGTTCG
TACTTCGGGGCCGACAAGCTCAACTATATAGGAATAGACATTAACCCCGA
ATGCAAACAGTTTGAAAAGGACGGAGTTCGCATTGTTATTGGTAATCAAG
GGGACCCTGCGTTCTGGGAGCAATTCAAAAAAGAAATCCCGGACGAGCTG
GACATTTTTGTCGACGACGGAGGACACACCATGAACCAGCAAATTGTAAC
ATTTGATAAGATGTTTTGGGGAGTTCGAGATGGTGGTATTTACCTATGCG
AAGATTTGCACACGAGTTACTGGCAGGAATATGAAGGTGGTTACCTCAAC
AACAATAGCATGATTGAGAAATCCAAAACACTCATCGATACCATCAATGC
TTGGCATTCAAAAGAAGCGGGTTTGCAGGTGAATAGTTTGACACGGAACA
TTCGAGGATTGCACTTCTATGATTCCATGATTTTCATTGACAAACGTGCA
ACGGAACCGATGGAAAGAATGAAGTCCGGTGATTATTGGATTGACGTATG
AATGACTATCGATCTTCAAAAGACAGCCGATGAGCTGGCCACCTACAAAG
TCAAGGCTGAACACCAAGACAAATTAGAGAATTTGGAGGATGTTACCCAG
TCGCTTAGGATAGAAAACGAGCCGGAAGTAAATGAGCTATTTACATGGTT
TACGGATCGCCAAAAAGGTCCTGGGGCACACAAGTGGTCCACATATCTTG
ATGCCTATCACCGACACTTCAACCGATTTCGTACACAAGCCAAAATAACA
ATGGTAGAGGTGGGAGTGCAAAGCGGAGGATCTATCGAAATGTGGCGTTC
GTACTTCGGGGCCGACAAGCTCAACTATATAGGAATAGACATTAACCCCG
AATGCAAACAGTTTGAAAAGGACGGAGTTCGCATTGTTATTGGTAATCAA
GGGGACCCTGCGTTCTGGGAGCAATTCAAAAAAGAAATCCCGGACGAGCT
GGACATTTTTGTCGACGACGGAGGACACACCATGAACCAGCAAATTGTAA
CATTTGATAAGATGTTTTGGGGAGTTCGAGATGGTGGTATTTACCTATGC
GAAGATTTGCACACGAGTTACTGGCAGGAATATGAAGGTGGTTACCTCAA
CAACAATAGCATGATTGAGAAATCCAAAACACTCATCGATACCATCAATG
CTTGGCATTCAAAAGAAGCGGGTTTGCAGGTGAATAGTTTGACACGGAAC
ATTCGAGGATTGCACTTCTATGATTCCATGATTTTCATTGACAAACGTGC
AACGGAACCGATGGAAAGAATGAAGTCCGGTGATTATTGGATTGACGTAT
GAATGACTATCGATCTTCAAAAGACAGCCGATGAGCTGGCCACCTACAAA
GTCAAGGCTGAACACCAAGACAAATTAGAGAATTTGGAGGATGTTACCCA
GTCGCTTAGGATAGAAAACGAGCCGGAAGTAAATGAGCTATTTACATGGT
TTACGGATCGCCAAAAAGGTCCTGGGGCACACAAGTGGTCCACATATCTT
GATGCCTATCACCGACACTTCAACCGATTTCGTACACAAGCCAAAATAAC
AATGGTAGAGGTGGGAGTGCAAAGCGGAGGATCTATCGAAATGTGGCGTT
CGTACTTCGGGGCCGACAAGCTCAACTATATAGGAATAGACATTAACCCC
GAATGCAAACAGTTTGAAAAGGACGGAGTTCGCATTGTTATTGGTAATCA
AGGGGACCCTGCGTTCTGGGAGCAATTCAAAAAAGAAATCCCGGACGAGC
TGGACATTTTTGTCGACGACGGAGGACACACCATGAACCAGCAAATTGTA
ACATTTGATAAGATGTTTTGGGGAGTTCGAGATGGTGGTATTTACCTATG
CGAAGATTTGCACACGAGTTACTGGCAGGAATATGAAGGTGGTTACCTCA
ACAACAATAGCATGATTGAGAAATCCAAAACACTCATCGATACCATCAAT
GCTTGGCATTCAAAAGAAGCGGGTTTGCAGGTGAATAGTTTGACACGGAA
CATTCGAGGATTGCACTTCTATGATTCCATGATTTTCATTGACAAACGTG
CAACGGAACCGATGGAAAGAATGAAGTCCGGTGATTATTGGATTGACGTA
TGAATGACTATCGATCTTCAAAAGACAGCCGATGAGCTGGCCACCTACAA
AGTCAAGGCTGAACACCAAGACAAATTAGAGAATTTGGAGGATGTTACCC
AGTCGCTTAGGATAGAAAACGAGCCGGAAGTAAATGAGCTATTTACATGG
TTTACGGATCGCCAAAAAGGTCCTGGGGCACACAAGTGGTCCACATATCT
TGATGCCTATCACCGACACTTCAACCGATTTCGTACACAAGCCAAAATAA
CAATGGTAGAGGTGGGAGTGCAAAGCGGAGGATCTATCGAAATGTGGCGT
TCGTACTTCGGGGCCGACAAGCTCAACTATATAGGAATAGACATTAACCC
CGAATGCAAACAGTTTGAAAAGGACGGAGTTCGCATTGTTATTGGTAATC
AAGGGGACCCTGCGTTCTGGGAGCAATTCAAAAAAGAAATCCCGGACGAG
CTGGACATTTTTGTCGACGACGGAGGACACACCATGAACCAGCAAATTGT
AACATTTGATAAGATGTTTTGGGGAGTTCGAGATGGTGGTATTTACCTAT
GCGAAGATTTGCACACGAGTTACTGGCAGGAATATGAAGGTGGTTACCTC
AACAACAATAGCATGATTGAGAAATCCAAAACACTCATCGATACCATCAA
TGCTTGGCATTCAAAAGAAGCGGGTTTGCAGGTGAATAGTTTGACACGGA
ACATTCGAGGATTGCACTTCTATGATTCCATGATTTTCATTGACAAACGT
GCAACGGAACCGATGGAAAGAATGAAGTCCGGTGATTATTGGATTGACGT
ATGA

Synonyms

Publications