jgi.p|Nanoce1779_2|629113, mRNA_3756 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629113
Unique Name	mRNA_3756
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2107
Alignment location	scaffold_6:1170777..1172883 -

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Properties


Property Name	Value
TranscriptId	629199
Track	FilteredModels2
ProteinId	629113

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1170777..1172883 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629113	gene_3756	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629113	mRNA_3756-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3756	CDS_3756	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1170777..1172883-
coding sequence from alignment at scaffold_6:1170777..1172883-

mRNA sequence

>mRNA_3756 ID=mRNA_3756|Name=jgi.p|Nanoce1779_2|629113|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp
AAGAAAGACAATGTACATATTACATTATTATTTAAAAAAAATGTGCTCCA
GGTATTAATTCGAACATATGTATATTCATAAGTATACTTAGTATATCTGT
ATATATTATTGGTCCTTGTCGTCATCCCCCTCTGTAAAGTATGCACGTCG
TTGAAGCGATATGTCGTAGGTATCGCGTTCGGCGGAAGTCCCTCATGGTC
GAGTGTAATTGAAATAATCGGGAGAAGAGCAATAATTTCTGACATTTTGT
GACAGGTTAGCGTTCCATGACTTACTATCAAAGTAGCAAGGAATTATTCC
GGATTCCTAAACAGACCATTTGGAGAAGGAGAGTACATTATCTGGTGCCC
CTTATGGCAATTCCATCGCTGTTATACTTGAACATCTCTGGTTTGGATAC
AAATCTTCAGGTGCACCATGGCCTAGCATCCACGGGCATGTGCGAGATCT
CACCATTGCTCGGCAAATTACTGGTCGTTGTATCCTTCCATTGGAATGTC
ACCAAACTTATTTATCTCACCACCATGCTTGATACGATTCGAACCTACAA
GACTCGCGTCCATGTTGTCATAGTGACTAATCAGGCGCAAGCATTAAGGC
GCGCCCTGCAAAAAACGAAGCTCTTCAGTGGCAACAATCCAACGCTACAA
ATTACGCAAGCACCTCCTACCGAGGATACAAACGAGCATGCACTTCTATG
GGCACATAGAAAAGTCATCGAGGATCAATTGGACCTTTATCCTAATTTTA
CGTCTATCATATACATGGAAGATGATACTCGACTCAGCTGGCCCGCTGTG
ATTTCGTGGGCCCTCGATACGGAAGTGCTGACGCCTCTAAATTTTTCTCG
TTGCATTTATAGGACAGAAACAGATGTCGAGACAGGAGGATCAAACATAC
TGGATTGGACTAGACCCCTAGATCTCACATACGAAAATACCTTAAATGTG
ACTCACAAGATGGACTATGCTCGTGTGCGGGACCGTCTCCGAAATGCCTC
TATTTGTCGTTGCGGGGAGCATCGCGATGGGACGCCGTGGCCCTGCAGAG
TACACGATAATTATTTTGCTCCCAGCCAACCATATCAAGGCATGTGGATG
GCTTCCCGAGCTCAGTTGGCCTCTTTCATAGCGCACCCCTATTGGACGAA
AGAAGGCGCCAGTAATGGTAGCATCGATTTCATTATAGGATATCCAGAGC
GCACCACGTTCATGAATCTCGTCGTCAACGTGCCTACAGCATATCGATCG
AGCTGCATGGTGCCGTATATATTCAGTGACAGCGAAGGCGAAGGTCGCAA
GGCCAGTCTACCTGTGGTTGCTGAGGTCGAACACATGCGGAATGGGTACA
GCACTGTGCCTCACAGCCCACATGCGAAGATTCATGTCGAGGCGGCGATA
CGGGAACTAATTTAGACACCCCCATATGAAAACAACAATTACGCTCTTTC
CAACCCACCCACCCACCCCCCAGAAGAAAAAGGTCGGTGAGCATGTAATG
GAGTGTATCTTAGAGGGCTCGAAAAACAGAGCACCCCTATGGCCAAAAAA
GAGTTCCGGTAAATAAGGTTGAAGGACGTTCTTGAAGAGATGGACAAAGG
CAAGCATTCTGTCTGTCACCAAGGAGCAGGTACTGTCTTTGCGCATTTTC
CGCCTCTCATTGGATGGCTTCGTGTGGAATCCAAGTTCAGCATTCAATTC
ATTGTCTACTCTGTGGAGCATTCATTCAAGCCAAGGAGAGGTTTTCATGT
CCCTTGCGTCCCCCCTTTATCTATTGTGAGAGTGCGCTTCTTTGGAAATC
ACGAGATGAACTGCCCACATTTATCGTAGCTTCAAATGTCCCACCGCTCT
TTAACATGTTTCAGAAGAGGAATGAATGTCCAATAATAAAGACGATCTAC
GATCGGCCATGGAGTCTAGTACACAGTGAGGCGTACATGAAAAAGCGACT
TGCTCGTGTTCACATTTGCCATCGATACAGCTCGGGAATTGAATTTAGGA
ATTGTAACTTTTTCGGTTTTTCTTCTTGTACATTTCGGACTCCGTGTATG
GCAGAAAAATGGTAGAGCTTACAAAGATAATTCAAATTATGAATGACACC
AACGAGA

protein sequence of jgi.p|Nanoce1779_2|629113

>mRNA_3756-protein ID=mRNA_3756-protein|Name=jgi.p|Nanoce1779_2|629113|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MTYYQSSKELFRIPKQTIWRRRVHYLVPLMAIPSLLYLNISGLDTNLQVH
HGLASTGMCEISPLLGKLLVVVSFHWNVTKLIYLTTMLDTIRTYKTRVHV
VIVTNQAQALRRALQKTKLFSGNNPTLQITQAPPTEDTNEHALLWAHRKV
IEDQLDLYPNFTSIIYMEDDTRLSWPAVISWALDTEVLTPLNFSRCIYRT
ETDVETGGSNILDWTRPLDLTYENTLNVTHKMDYARVRDRLRNASICRCG
EHRDGTPWPCRVHDNYFAPSQPYQGMWMASRAQLASFIAHPYWTKEGASN
GSIDFIIGYPERTTFMNLVVNVPTAYRSSCMVPYIFSDSEGEGRKASLPV
VAEVEHMRNGYSTVPHSPHAKIHVEAAIRELI*

mRNA from alignment at scaffold_6:1170777..1172883-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3756 ID=mRNA_3756|Name=jgi.p|Nanoce1779_2|629113|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp|location=Sequence derived from alignment at scaffold_6:1170777..1172883- (Nannochloropsis oceanica)
AAGAAAGACAATGTACATATTACATTATTATTTAAAAAAAATGTGCTCCA
GGTATTAATTCGAACATATGTATATTCATAAGTATACTTAGTATATCTGT
ATATATTATTGGTCCTTGTCGTCATCCCCCTCTGTAAAGTATGCACGTCG
TTGAAGCGATATGTCGTAGGTATCGCGTTCGGCGGAAGTCCCTCATGGTC
GAGTGTAATTGAAATAATCGGGAGAAGAGCAATAATTTCTGACATTTTGT
GACAGGTTAGCGTTCCATGACTTACTATCAAAGTAGCAAGGAATTATTCC
GGATTCCTAAACAGACCATTTGGAGAAGGAGAGTACATTATCTGGTGCCC
CTTATGGCAATTCCATCGCTGTTATACTTGAACATCTCTGGTTTGGATAC
AAATCTTCAGGTGCACCATGGCCTAGCATCCACGGGCATGTGCGAGATCT
CACCATTGCTCGGCAAATTACTGGTCGTTGTATCCTTCCATTGGAATGTC
ACCAAACTTATTTATCTCACCACCATGCTTGATACGATTCGAACCTACAA
GACTCGCGTCCATGTTGTCATAGTGACTAATCAGGCGCAAGCATTAAGGC
GCGCCCTGCAAAAAACGAAGCTCTTCAGTGGCAACAATCCAACGCTACAA
ATTACGCAAGCACCTCCTACCGAGGATACAAACGAGCATGCACTTCTATG
GGCACATAGAAAAGTCATCGAGGATCAATTGGACCTTTATCCTAATTTTA
CGTCTATCATATACATGGAAGATGATACTCGACTCAGCTGGCCCGCTGTG
ATTTCGTGGGCCCTCGATACGGAAGTGCTGACGCCTCTAAATTTTTCTCG
TTGCATTTATAGGACAGAAACAGATGTCGAGACAGGAGGATCAAACATAC
TGGATTGGACTAGACCCCTAGATCTCACATACGAAAATACCTTAAATGTG
ACTCACAAGATGGACTATGCTCGTGTGCGGGACCGTCTCCGAAATGCCTC
TATTTGTCGTTGCGGGGAGCATCGCGATGGGACGCCGTGGCCCTGCAGAG
TACACGATAATTATTTTGCTCCCAGCCAACCATATCAAGGCATGTGGATG
GCTTCCCGAGCTCAGTTGGCCTCTTTCATAGCGCACCCCTATTGGACGAA
AGAAGGCGCCAGTAATGGTAGCATCGATTTCATTATAGGATATCCAGAGC
GCACCACGTTCATGAATCTCGTCGTCAACGTGCCTACAGCATATCGATCG
AGCTGCATGGTGCCGTATATATTCAGTGACAGCGAAGGCGAAGGTCGCAA
GGCCAGTCTACCTGTGGTTGCTGAGGTCGAACACATGCGGAATGGGTACA
GCACTGTGCCTCACAGCCCACATGCGAAGATTCATGTCGAGGCGGCGATA
CGGGAACTAATTTAGACACCCCCATATGAAAACAACAATTACGCTCTTTC
CAACCCACCCACCCACCCCCCAGAAGAAAAAGGTCGGTGAGCATGTAATG
GAGTGTATCTTAGAGGGCTCGAAAAACAGAGCACCCCTATGGCCAAAAAA
GAGTTCCGGTAAATAAGGTTGAAGGACGTTCTTGAAGAGATGGACAAAGG
CAAGCATTCTGTCTGTCACCAAGGAGCAGGTACTGTCTTTGCGCATTTTC
CGCCTCTCATTGGATGGCTTCGTGTGGAATCCAAGTTCAGCATTCAATTC
ATTGTCTACTCTGTGGAGCATTCATTCAAGCCAAGGAGAGGTTTTCATGT
CCCTTGCGTCCCCCCTTTATCTATTGTGAGAGTGCGCTTCTTTGGAAATC
ACGAGATGAACTGCCCACATTTATCGTAGCTTCAAATGTCCCACCGCTCT
TTAACATGTTTCAGAAGAGGAATGAATGTCCAATAATAAAGACGATCTAC
GATCGGCCATGGAGTCTAGTACACAGTGAGGCGTACATGAAAAAGCGACT
TGCTCGTGTTCACATTTGCCATCGATACAGCTCGGGAATTGAATTTAGGA
ATTGTAACTTTTTCGGTTTTTCTTCTTGTACATTTCGGACTCCGTGTATG
GCAGAAAAATGGTAGAGCTTACAAAGATAATTCAAATTATGAATGACACC
AACGAGA

Coding sequence (CDS) from alignment at scaffold_6:1170777..1172883-

>mRNA_3756 ID=mRNA_3756|Name=jgi.p|Nanoce1779_2|629113|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_6:1170777..1172883- (Nannochloropsis oceanica)
ATGACTTACTATCAAAGTAGCAAGGAATTATTCCGGATTCCTAAACAGAC
CATTTGGAGAAGGAGAGTACATTATCTGGTGCCCCTTATGGCAATTCCAT
CGCTGTTATACTTGAACATCTCTGGTTTGGATACAAATCTTCAGGTGCAC
CATGGCCTAGCATCCACGGGCATGTGCGAGATCTCACCATTGCTCGGCAA
ATTACTGGTCGTTGTATCCTTCCATTGGAATGTCACCAAACTTATTTATC
TCACCACCATGCTTGATACGATTCGAACCTACAAGACTCGCGTCCATGTT
GTCATAGTGACTAATCAGGCGCAAGCATTAAGGCGCGCCCTGCAAAAAAC
GAAGCTCTTCAGTGGCAACAATCCAACGCTACAAATTACGCAAGCACCTC
CTACCGAGGATACAAACGAGCATGCACTTCTATGGGCACATAGAAAAGTC
ATCGAGGATCAATTGGACCTTTATCCTAATTTTACGTCTATCATATACAT
GGAAGATGATACTCGACTCAGCTGGCCCGCTGTGATTTCGTGGGCCCTCG
ATACGGAAGTGCTGACGCCTCTAAATTTTTCTCGTTGCATTTATAGGACA
GAAACAGATGTCGAGACAGGAGGATCAAACATACTGGATTGGACTAGACC
CCTAGATCTCACATACGAAAATACCTTAAATGTGACTCACAAGATGGACT
ATGCTCGTGTGCGGGACCGTCTCCGAAATGCCTCTATTTGTCGTTGCGGG
GAGCATCGCGATGGGACGCCGTGGCCCTGCAGAGTACACGATAATTATTT
TGCTCCCAGCCAACCATATCAAGGCATGTGGATGGCTTCCCGAGCTCAGT
TGGCCTCTTTCATAGCGCACCCCTATTGGACGAAAGAAGGCGCCAGTAAT
GGTAGCATCGATTTCATTATAGGATATCCAGAGCGCACCACGTTCATGAA
TCTCGTCGTCAACGTGCCTACAGCATATCGATCGAGCTGCATGGTGCCGT
ATATATTCAGTGACAGCGAAGGCGAAGGTCGCAAGGCCAGTCTACCTGTG
GTTGCTGAGGTCGAACACATGCGGAATGGGTACAGCACTGTGCCTCACAG
CCCACATGCGAAGATTCATGTCGAGGCGGCGATACGGGAACTAATTTAG

Synonyms

Publications