jgi.p|Nanoce1779_2|669659, mRNA_3751 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669659
Unique NamemRNA_3751
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length977
Alignment locationscaffold_6:1149333..1150573 -

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Properties
Property NameValue
TranscriptId669745
TrackFilteredModels2
ProteinId669659
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1149333..1150573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669659gene_3751Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669659mRNA_3751-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3751CDS_3751Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3751 ID=mRNA_3751|Name=jgi.p|Nanoce1779_2|669659|organism=Nannochloropsis oceanica|type=mRNA|length=977bp
CAGCCCTTTCTTTGTTCGACACCCACAGTAAATCGTCCCCGCCTTCACTC
CGCGCACAGCAATATGGTCCTCTTTGGTGGCCGCGGTAGTGGGGCTCGTA
ACGCGGGCGTCGCTAGTACCCCTGCTGCCCCAGCTCCCAGCAGCACTCTC
TCCGATCGTTTTAATCGCCTGCACGTCAAGATCGCACCAGCCTTCACGGG
CGGTGCAGCGCGTGACAGCCGCCGCATCCAGACGCAGACCTCCCAGCAAC
AGAAGCGAATTGCGGCCCAAGCGGCTTTTCGGGGACAGACCGTGCAGATC
GTCCTCCCCAAGCAGCAGCAATCCCAGCAACACCGACAGCAGCAGCATCA
GCAGCGAGGTAGGCGTATTGTGGGACGTGGAGGGGGACGAGGAGTGGGTC
TGGCTGGCCGTGGGAGTGCTGGCCGGGGTGGACGGGGGGGAGGGCGCGGC
GGCGTTGGTGGGCGGGGCACCCGTGGTGGACGAGGAGGGGGTCGTGGCCG
TGGGGGGGGAGGGGCTGTGAAGAAGGTGGATAAGGACGATTTGGACGCAC
AGATGGACGAATACCATTTCAAGGCGGGCAAGGGCCCCGACCCGAAGATT
GCTCAGGCAGAACGGAAGAAGGCCTCCTTGGACACGGAGATGGATTCGTA
TTGGGAGGCCAAGAACAAAGCGGCAGCAACCGCAGCACCGATGCCGGCCA
CTGGGGCAGCGGCATCGGCAGAGGGAGGGGATGCAGAGACGGCGCCCATG
GAGGGATGAAGAGCTCGTCAGGAGAGGGAAGGGTGCGAGGCACGATCGAA
TGGTAAGGGAATGAATAGGGTGCAAAAGTCAATGACGGCGATGAAGAGCA
CGGCCTAATCTAATCATATAGTACGAGAGTAGTTAAAGGGAAATGGTGCG
AGGAAGGAGGGACCGCGATTCCAAAGGTGTACGTGTGCAAAAACACATTG
AAAAGAAGAAACCACCGATAAGGCAGG
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protein sequence of jgi.p|Nanoce1779_2|669659

>mRNA_3751-protein ID=mRNA_3751-protein|Name=jgi.p|Nanoce1779_2|669659|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MVLFGGRGSGARNAGVASTPAAPAPSSTLSDRFNRLHVKIAPAFTGGAAR
DSRRIQTQTSQQQKRIAAQAAFRGQTVQIVLPKQQQSQQHRQQQHQQRGR
RIVGRGGGRGVGLAGRGSAGRGGRGGGRGGVGGRGTRGGRGGGRGRGGGG
AVKKVDKDDLDAQMDEYHFKAGKGPDPKIAQAERKKASLDTEMDSYWEAK
NKAAATAAPMPATGAAASAEGGDAETAPMEG*
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mRNA from alignment at scaffold_6:1149333..1150573-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3751 ID=mRNA_3751|Name=jgi.p|Nanoce1779_2|669659|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at scaffold_6:1149333..1150573- (Nannochloropsis oceanica)
CAGCCCTTTCTTTGTTCGACACCCACAGTAAATCGTCCCCGCCTTCACTC
CGCGCACAGCAATATGGTCCTCTTTGGTGGCCGCGGTAGTGGGGCTCGTA
ACGCGGGCGTCGCTAGTACCCCTGCTGCCCCAGCTCCCAGGTACGTGCAG
CCCCCTCTCTCCTTCCTCCTTGTTCCTTCCCGCCCTCCCTTTTCTATCAC
GAGCTCTAGGGAGCACAGCATTCTGGCTGCACATGGTACCAACGAGTAAG
ATGCAAACACGTGTTTTACGGGACCTTTCGTAGAGTTCATGACACTCCTT
TGGAAATAAGACCAAGTGAAGGGCGTCATCATGATCACCATCTGCACCAT
CAGCAGCAGCGGCCGCTGCACTGCACTAAGCCCCCTCCTCCCTACCCCGC
ACAGCAGCACTCTCTCCGATCGTTTTAATCGCCTGCACGTCAAGATCGCA
CCAGCCTTCACGGGCGGTGCAGCGCGTGACAGCCGCCGCATCCAGACGCA
GACCTCCCAGCAACAGAAGCGAATTGCGGCCCAAGCGGCTTTTCGGGGAC
AGACCGTGCAGATCGTCCTCCCCAAGCAGCAGCAATCCCAGCAACACCGA
CAGCAGCAGCATCAGCAGCGAGGTAGGCGTATTGTGGGACGTGGAGGGGG
ACGAGGAGTGGGTCTGGCTGGCCGTGGGAGTGCTGGCCGGGGTGGACGGG
GGGGAGGGCGCGGCGGCGTTGGTGGGCGGGGCACCCGTGGTGGACGAGGA
GGGGGTCGTGGCCGTGGGGGGGGAGGGGCTGTGAAGAAGGTGGATAAGGA
CGATTTGGACGCACAGATGGACGAATACCATTTCAAGGCGGGCAAGGGCC
CCGACCCGAAGATTGCTCAGGCAGAACGGAAGAAGGCCTCCTTGGACACG
GAGATGGATTCGTATTGGGAGGCCAAGAACAAAGCGGCAGCAACCGCAGC
ACCGATGCCGGCCACTGGGGCAGCGGCATCGGCAGAGGGAGGGGATGCAG
AGACGGCGCCCATGGAGGGATGAAGAGCTCGTCAGGAGAGGGAAGGGTGC
GAGGCACGATCGAATGGTAAGGGAATGAATAGGGTGCAAAAGTCAATGAC
GGCGATGAAGAGCACGGCCTAATCTAATCATATAGTACGAGAGTAGTTAA
AGGGAAATGGTGCGAGGAAGGAGGGACCGCGATTCCAAAGGTGTACGTGT
GCAAAAACACATTGAAAAGAAGAAACCACCGATAAGGCAGG
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Coding sequence (CDS) from alignment at scaffold_6:1149333..1150573-

>mRNA_3751 ID=mRNA_3751|Name=jgi.p|Nanoce1779_2|669659|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_6:1149333..1150573- (Nannochloropsis oceanica)
CAGCACTCTCTCCGATCGTTTTAATCGCCTGCACGTCAAGATCGCACCAG
CCTTCACGGGCGGTGCAGCGCGTGACAGCCGCCGCATCCAGACGCAGACC
TCCCAGCAACAGAAGCGAATTGCGGCCCAAGCGGCTTTTCGGGGACAGAC
CGTGCAGATCGTCCTCCCCAAGCAGCAGCAATCCCAGCAACACCGACAGC
AGCAGCATCAGCAGCGAGGTAGGCGTATTGTGGGACGTGGAGGGGGACGA
GGAGTGGGTCTGGCTGGCCGTGGGAGTGCTGGCCGGGGTGGACGGGGGGG
AGGGCGCGGCGGCGTTGGTGGGCGGGGCACCCGTGGTGGACGAGGAGGGG
GTCGTGGCCGTGGGGGGGGAGGGGCTGTGAAGAAGGTGGATAAGGACGAT
TTGGACGCACAGATGGACGAATACCATTTCAAGGCGGGCAAGGGCCCCGA
CCCGAAGATTGCTCAGGCAGAACGGAAGAAGGCCTCCTTGGACACGGAGA
TGGATTCGTATTGGGAGGCCAAGAACAAAGCGGCAGCAACCGCAGCACCG
ATGCCGGCCACTGGGGCAGCGGCATCGGCAGAGGGAGGGGATGCAGAGAC
GGCGCCCATGGAGGGATGAATGGTCCTCTTTGGTGGCCGCGGTAGTGGGG
CTCGTAACGCGGGCGTCGCTAGTACCCCTGCTGCCCCAGCTCCCAGCAGC
ACTCTCTCCGATCGTTTTAATCGCCTGCACGTCAAGATCGCACCAGCCTT
CACGGGCGGTGCAGCGCGTGACAGCCGCCGCATCCAGACGCAGACCTCCC
AGCAACAGAAGCGAATTGCGGCCCAAGCGGCTTTTCGGGGACAGACCGTG
CAGATCGTCCTCCCCAAGCAGCAGCAATCCCAGCAACACCGACAGCAGCA
GCATCAGCAGCGAGGTAGGCGTATTGTGGGACGTGGAGGGGGACGAGGAG
TGGGTCTGGCTGGCCGTGGGAGTGCTGGCCGGGGTGGACGGGGGGGAGGG
CGCGGCGGCGTTGGTGGGCGGGGCACCCGTGGTGGACGAGGAGGGGGTCG
TGGCCGTGGGGGGGGAGGGGCTGTGAAGAAGGTGGATAAGGACGATTTGG
ACGCACAGATGGACGAATACCATTTCAAGGCGGGCAAGGGCCCCGACCCG
AAGATTGCTCAGGCAGAACGGAAGAAGGCCTCCTTGGACACGGAGATGGA
TTCGTATTGGGAGGCCAAGAACAAAGCGGCAGCAACCGCAGCACCGATGC
CGGCCACTGGGGCAGCGGCATCGGCAGAGGGAGGGGATGCAGAGACGGCG
CCCATGGAGGGATGAATGGTCCTCTTTGGTGGCCGCGGTAGTGGGGCTCG
TAACGCGGGCGTCGCTAGTACCCCTGCTGCCCCAGCTCCCAG
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Synonyms
Publications