jgi.p|Nanoce1779_2|583284, mRNA_3750 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583284
Unique NamemRNA_3750
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length625
Alignment locationscaffold_6:1148347..1148971 -

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Properties
Property NameValue
TranscriptId583370
TrackFilteredModels2
ProteinId583284
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1148347..1148971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583284gene_3750Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583284mRNA_3750-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3750CDS_3750Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3750 ID=mRNA_3750|Name=jgi.p|Nanoce1779_2|583284|organism=Nannochloropsis oceanica|type=mRNA|length=625bp
ACATAACGGACGTTTTCCGCAAAGACCAAGCATTCGCAAACCCTCCCATG
TTGTCTCACAAGGTCACTACTCACGTGTCTCCTCCTTTTGCACCCTCTCC
TTATCACAGACATGCTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGC
CCGTTCGCCTCCCGTCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGG
AGTAGGCCTCGTGCTCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAA
GCCATGCGCTGGCACCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCT
TCTCCAGCTTCCGGACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCC
ATTAAAAGTCCAAGACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAG
CACTTGCCAAGCTAGAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACG
GAGGTAGATGCTCTCGGCATCCGTCGTCCACTCGACCGGCATATTTCATT
CATGCCCTCGTCGTCTACTGCAGACAGACGGAAGGCAGTACATGCAGCAG
AGGAGGAAATGGAAAAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACC
CACGAGAGGGAGACGATCACAAATA
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protein sequence of jgi.p|Nanoce1779_2|583284

>mRNA_3750-protein ID=mRNA_3750-protein|Name=jgi.p|Nanoce1779_2|583284|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MLSHKVTTHVSPPFAPSPYHRHACGGRKKPNVPLPVRLPSFRVLSPPLPR
RSRPRAPRPRPLPFADRKPCAGTSNCLFIVLIIVFSSFRTSPPSSSLNPP
PIKSPRPRPTIEGARTSSTCQARSRCPSPSGKRDGGRCSRHPSSTRPAYF
IHALVVYCRQTEGSTCSRGGNGKAGPTVF*
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mRNA from alignment at scaffold_6:1148347..1148971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3750 ID=mRNA_3750|Name=jgi.p|Nanoce1779_2|583284|organism=Nannochloropsis oceanica|type=mRNA|length=625bp|location=Sequence derived from alignment at scaffold_6:1148347..1148971- (Nannochloropsis oceanica)
ACATAACGGACGTTTTCCGCAAAGACCAAGCATTCGCAAACCCTCCCATG
TTGTCTCACAAGGTCACTACTCACGTGTCTCCTCCTTTTGCACCCTCTCC
TTATCACAGACATGCTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGCTGC
CCGTTCGCCTCCCGTCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGTCGG
AGTAGGCCTCGTGCTCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCGAAA
GCCATGCGCTGGCACCTCCAACTGCCTCTTCATCGTCCTTATCATCGTCT
TCTCCAGCTTCCGGACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCCCCC
ATTAAAAGTCCAAGACCTCGGCCGACTATTGAAGGAGCAAGAACTTCGAG
CACTTGCCAAGCTAGAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAGACG
GAGGTAGATGCTCTCGGCATCCGTCGTCCACTCGACCGGCATATTTCATT
CATGCCCTCGTCGTCTACTGCAGACAGACGGAAGGCAGTACATGCAGCAG
AGGAGGAAATGGAAAAGCAGGGCCGACCGTGTTCTAAAGGAGGAGAAACC
CACGAGAGGGAGACGATCACAAATA
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Coding sequence (CDS) from alignment at scaffold_6:1148347..1148971-

>mRNA_3750 ID=mRNA_3750|Name=jgi.p|Nanoce1779_2|583284|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_6:1148347..1148971- (Nannochloropsis oceanica)
ATGTTGTCTCACAAGGTCACTACTCACGTGTCTCCTCCTTTTGCACCCTC
TCCTTATCACAGACATGCTTGTGGCGGGCGGAAGAAGCCAAATGTGCCGC
TGCCCGTTCGCCTCCCGTCTTTCCGAGTCCTTTCCCCTCCCCTTCCTCGT
CGGAGTAGGCCTCGTGCTCCTCGTCCTCGTCCTCTCCCCTTTGCCGACCG
AAAGCCATGCGCTGGCACCTCCAACTGCCTCTTCATCGTCCTTATCATCG
TCTTCTCCAGCTTCCGGACGTCCCCTCCCTCCTCCTCGCTCAACCCCCCC
CCCATTAAAAGTCCAAGACCTCGGCCGACTATTGAAGGAGCAAGAACTTC
GAGCACTTGCCAAGCTAGAAGCCGCTGCCCAAGCCCTTCTGGAAAGCGAG
ACGGAGGTAGATGCTCTCGGCATCCGTCGTCCACTCGACCGGCATATTTC
ATTCATGCCCTCGTCGTCTACTGCAGACAGACGGAAGGCAGTACATGCAG
CAGAGGAGGAAATGGAAAAGCAGGGCCGACCGTGTTCTAA
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Synonyms
Publications