jgi.p|Nanoce1779_2|583280, mRNA_3749 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583280
Unique NamemRNA_3749
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1271
Alignment locationscaffold_6:1146969..1148371 +

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Properties
Property NameValue
TranscriptId583366
TrackFilteredModels2
ProteinId583280
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1146969..1148371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583280gene_3749Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583280mRNA_3749-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3749CDS_3749Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3749 ID=mRNA_3749|Name=jgi.p|Nanoce1779_2|583280|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp
AGTGGCACGTGAGCGGGAGTATAACGATCTCAAAAAGGACCGAGTATATT
ATAATCAGCTCATGAAAATAGGAGAGAAGGAAAGGGAGGGACATGGCCAA
GAAAACTTTGGTAAATTATTTTTGTTAACGCAGGAGGAACAAATCTCGGG
CAGTGTATATCATCGGTATGTTCAATATTTCTTTCTACAAAGTGGTATCA
GTTCCTTCCTGTCTCTTGCATCCCCTTCGCCTATTTATCTCTCCCGGAGG
CGTGCAGCAGGGCTGGGTCAATCCACTCGATCGTATCCTGTAAAGAAGTG
GAAAAAGAGACGTGACCATATTTCTGCAGTGGCTTTATTTTCGCGTCTCC
CGCCGCTTTCATGTCTCGTTCTTGTCTCGTATCCTGATCCTCCCAGCCGA
TACTTTCCTGAACTCCACAGCCCTCCTCCTCCTTCTCTTCCACCCTCTTT
TTGCCTCCCTCTTACCTTGGGTACAGCAGCCCTACTTTCCCTTTGCCATT
GCAACAACAGCGTCGCCGCGGGCGCCGTGAGCCCGCAGGCCTTGAGCGTC
ATGTTCATTATTGTCGACTTCCCCTCCCCTGCCGACAGACGTCGAGGCCC
CATTCCCCCTAGATTGAGGAGGACGAATTGCGGAGGGAGAGGTGCAAGGG
AGAGGGCGGTGCGAAGGAGGGTAAAAACGTCCTTTAGAATTGGGAAAAGG
GGAAAGATAAAAAAAAAGTACGGATAAGAAAACAGGGATGTATGAAAATG
CAGTAGCAGGAGAAACTACAAACCGAGATTCTTCACGATGACGTGATCAT
CTCTACCTTTTTTTTTCCCTTCTCTCCCTCCTCCCTCTTCGTTCTCTTTC
GCCTCCTCTTCCTCCTCCTTCCCCTCTGTTATCCTTTCTTCCCACCTCCC
ATCCCCAACCCCACGCACCGCCACGTGCTCCCCCTCGTAAAAGCGGGCCG
TCAAGATGGCGCCGTCCGGGAACTTAATCCGCAGGAGTAGCAGCAGGGTG
GTCGGTACTGTTTTCGCTGTCGGTGGTTTAAGCGGGGGCTGATAGAGCTG
TCTATCGCTTTCCTTTTGTCATGGATTTCAATTACCTTTCCGCCATTCCT
GCTGGCGTCACGCCTCTGCTTCCCCCGCCGCGATCGAAACTGCGAAAGCT
CCTCCACACGTGCCCTTCGTGTCTGGTACGCCTGTTGCAGCAATTGCCTG
TCCACCGCCGGACTTACGTACTCGTCGACTTCATTCATTGCTGCTATATT
TGTGATCGTCTCCCTCTCGTG
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protein sequence of jgi.p|Nanoce1779_2|583280

>mRNA_3749-protein ID=mRNA_3749-protein|Name=jgi.p|Nanoce1779_2|583280|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MKIGEKEREGHGQENFGKLFLLTQEEQISGSVYHRYVQYFFLQSGISSFL
SLASPSPIYLSRRRAAGLGQSTRSYPVKKWKKRRDHISAVALFSRLPPLS
CLVLVSYPDPPSRYFPELHSPPPPSLPPSFCLPLTLGTAALLSLCHCNNS
VAAGAVSPQALSVMFIIVDFPSPADRRRGPIPPRLRRTNCGGRGARERAV
RRRVKTSFRIGKRGKIKKKYG*
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mRNA from alignment at scaffold_6:1146969..1148371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3749 ID=mRNA_3749|Name=jgi.p|Nanoce1779_2|583280|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp|location=Sequence derived from alignment at scaffold_6:1146969..1148371+ (Nannochloropsis oceanica)
AGTGGCACGTGAGCGGGAGTATAACGATCTCAAAAAGGACCGAGTATATT
ATAATCAGCTCATGAAAATAGGAGAGAAGGAAAGGGAGGGACATGGCCAA
GAAAACTTTGGTAAATTATTTTTGTTAACGCAGGAGGAACAAATCTCGGG
CAGTGTATATCATCGGTATGTTCAATATTTCTTTCTACAAAGTGGTATCA
GTTCCTTCCTGTCTCTTGCATCCCCTTCGCCTATTTATCTCTCCCGGAGG
CGTGCAGCAGGGCTGGGTCAATCCACTCGATCGTATCCTGTAAAGAAGTG
GAAAAAGAGACGTGACCATATTTCTGCAGTGGCTTTATTTTCGCGTCTCC
CGCCGCTTTCATGTCTCGTTCTTGTCTCGTATCCTGATCCTCCCAGCCGA
TACTTTCCTGAACTCCACAGCCCTCCTCCTCCTTCTCTTCCACCCTCTTT
TTGCCTCCCTCTTACCTTGGGTACAGCAGCCCTACTTTCCCTTTGCCATT
GCAACAACAGCGTCGCCGCGGGCGCCGTGAGCCCGCAGGCCTTGAGCGTC
ATGTTCATTATTGTCGACTTCCCCTCCCCTGCCGACAGACGTCGAGGCCC
CATTCCCCCTAGATTGAGGAGGACGAATTGCGGAGGGAGAGGTGCAAGGG
AGAGGGCGGTGCGAAGGAGGGTAAAAACGTCCTTTAGAATTGGGAAAAGG
GGAAAGATAAAAAAAAAGTACGGATAAGAAAACAGGGATGTATGAAAATG
CAGTAGCAGGAGAAACTACAAACCGAGATTCTTCACGATGACGTGATCAT
CTCTACCTTTTTTTTTCCCTTCTCTCCCTCCTCCCTCTTCGTTCTCTTTC
GCCTCCTCTTCCTCCTCCTTCCCCTCTGTTATCCTTTCTTCCCACCTCCC
ATCCCCAACCCCACGCACCGCCACGTGCTCCCCCTCGTAAAAGCGGGCCG
TCAAGATGGCGCCGTCCGGGAACTTAATCCGCAGGAGTAGCAGCAGGGTG
GTCGGTACTGTTTTCGCTGTCGGTGGTTTAAGCGGGGGCTGATAGAGCTA
TAGGTGGAAAGGAGAGGGAGAGAGGATATGCTTGAGGCTTGGCGAGAACG
TCAAGAGGATAAAAATCGTAAAGTTGCCCCCATCGGAAATGTAGTCACAT
CCCTCCAAGCCACCATTCACTCCTTCTACCTGTCTATCGCTTTCCTTTTG
TCATGGATTTCAATTACCTTTCCGCCATTCCTGCTGGCGTCACGCCTCTG
CTTCCCCCGCCGCGATCGAAACTGCGAAAGCTCCTCCACACGTGCCCTTC
GTGTCTGGTACGCCTGTTGCAGCAATTGCCTGTCCACCGCCGGACTTACG
TACTCGTCGACTTCATTCATTGCTGCTATATTTGTGATCGTCTCCCTCTC
GTG
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Coding sequence (CDS) from alignment at scaffold_6:1146969..1148371+

>mRNA_3749 ID=mRNA_3749|Name=jgi.p|Nanoce1779_2|583280|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_6:1146969..1148371+ (Nannochloropsis oceanica)
ATGAAAATAGGAGAGAAGGAAAGGGAGGGACATGGCCAAGAAAACTTTGG
TAAATTATTTTTGTTAACGCAGGAGGAACAAATCTCGGGCAGTGTATATC
ATCGGTATGTTCAATATTTCTTTCTACAAAGTGGTATCAGTTCCTTCCTG
TCTCTTGCATCCCCTTCGCCTATTTATCTCTCCCGGAGGCGTGCAGCAGG
GCTGGGTCAATCCACTCGATCGTATCCTGTAAAGAAGTGGAAAAAGAGAC
GTGACCATATTTCTGCAGTGGCTTTATTTTCGCGTCTCCCGCCGCTTTCA
TGTCTCGTTCTTGTCTCGTATCCTGATCCTCCCAGCCGATACTTTCCTGA
ACTCCACAGCCCTCCTCCTCCTTCTCTTCCACCCTCTTTTTGCCTCCCTC
TTACCTTGGGTACAGCAGCCCTACTTTCCCTTTGCCATTGCAACAACAGC
GTCGCCGCGGGCGCCGTGAGCCCGCAGGCCTTGAGCGTCATGTTCATTAT
TGTCGACTTCCCCTCCCCTGCCGACAGACGTCGAGGCCCCATTCCCCCTA
GATTGAGGAGGACGAATTGCGGAGGGAGAGGTGCAAGGGAGAGGGCGGTG
CGAAGGAGGGTAAAAACGTCCTTTAGAATTGGGAAAAGGGGAAAGATAAA
AAAAAAGTACGGATAA
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Synonyms
Publications