Properties
| Property Name | Value |
|---|
| TranscriptId | 583362 |
| Track | FilteredModels2 |
| ProteinId | 583276 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:1144439..1146993 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3748 ID=mRNA_3748|Name=jgi.p|Nanoce1779_2|583276|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp
GTTATACTCCCGCTCACGTGCCACTCCTACCTACCTCCCCATCCCCATCC
CCCAACTATGGTGGTCTAATGTGACTAAACTACTGAAAATACTTCACACG
ATGCAAACCCAAAATACCATGCACCCTTCCTGGATATATTAAGCCTTACC
CATGCCGTCCGCATGCACGTTGTATGATACTGTGATGAAGAAAGACTCTT
AAGTGGGGCTCATGTTCTAGTTCTACATATCAATACTGTAGAACAAACTA
CACGACCACAAAGAAAGGACTCGACAGAAGCAGACAGGACGATGAATTCC
TTCTCCGCACTCACTTCTGTCACTCTTTCACCCCCCCAAAGCAACTACAG
CAACACACAGCCACCATCTCCAAGTCAAGGCAAGTATGATGGCCCCTGAA
GAGACAAAGGTCGCGGCCGGCAGTCCCGGAAGCGCCAGCAATCTGGACAA
ACCCAACACTTCAGCCAAGGTAAAGCAAATGACGTGGCTGGAGACCCTTC
GTCGAGATGGATGTCTTCCCCTGAAAACTATTGGCTTCTTCACTGGCATG
GCTCTTACTATTATTGCCTGCCTGACTTTCGCTTCCAAGCTCTTGGACTT
GAATGTCGTGGGGGCGATCAACCAGGTTTGGCTTGCCATCTTCGGCCTAA
CGATGATGCTGCTCGAGGCATCTACCAGTACCAACTTCGTGTCGAAAAAG
GTTTCTCGATGGTTAAATGAGAATATGAAGATATTGACATACATGACTGG
ACGCGGGTTGTTCTATTGCTTCCTCGGCACGATCGAGCTAGGCTTCTGGT
TCTCTACCCTCCACCTGGTTATTGGCATCATCCTCTGCGTCTTGGGCGTA
GTAACGATCTTTGTTGGATTTGCCTTGGGGATGAAGCTTCGGTCCATCCG
TCGGGATTTAGCCAGGGAGGACGACGCGCGTAAGACCTTCCAAGATTTCG
ATGAAGACCAAGACGGACGTCTGTCAACCTCCGAGCTCGCTCGGCTCTGC
CATTCCTTGGGGAGTAAGCTGACCCACAACGAATTACAAGCAGCCGTTAC
GACACTGGACGTTAACAGGGACGGTTATATCCAAGAGGAGGAGTTCTTGC
GGTGGTGGCGGGGGGATGCGGAGCTCAAGAAACCGATCGAGGTGTGAGAT
TATGAGGCGGGAGGGAGGGGCCGAAGGAAGGCAGGGATTTGTGTGTATAG
ATGGGTGTTCTGGCGTGGTGTGTGTGTGTCGGTGGGTGTGCATTGTGTGC
ATTGAAGGGGAAGGGAATGCTGGATAGAAAGAGCAAAAGTGAATCAGAGA
GAGATTGATCAAGCAATGAAAATCATGAAGGCTTATGCATCGATGTGCCC
CTGGTCACGGCACAAAGACATGAGGTTGACAGATTTTCAACCACATAAAT
ACGGCGAAAGAAAAGCAGATTGAAAATGGGCGTGACAAACCAAAAGCTCT
TACCGAGATACAGGAAGCCAAACCAGAATGAATTATGTGACCAGCAAAAG
AAAATTGTACAGGTTTTGCT back to topprotein sequence of jgi.p|Nanoce1779_2|583276 >mRNA_3748-protein ID=mRNA_3748-protein|Name=jgi.p|Nanoce1779_2|583276|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MMAPEETKVAAGSPGSASNLDKPNTSAKVKQMTWLETLRRDGCLPLKTIG
FFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEASTSTN
FVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIIL
CVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQDGRLSTSE
LARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWWRGDAELKKP
IEV* back to topmRNA from alignment at scaffold_6:1144439..1146993- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3748 ID=mRNA_3748|Name=jgi.p|Nanoce1779_2|583276|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp|location=Sequence derived from alignment at scaffold_6:1144439..1146993- (Nannochloropsis oceanica)
GTTATACTCCCGCTCACGTGCCACTCCTACCTACCTCCCCATCCCCATCC
CCCAACTATGGTGGTCTAATGTGACTAAACTACTGAAAATACTTCACACG
ATGCAAACCCAAAATACCATGCACCCTTCCTGGATATATTAAGCCTTACC
CATGCCGTCCGCATGCACGTTGTATGATACTGTGATGAAGAAAGACTCTT
AAGTGGGGCTCATGTTCTAGTTCTACATATCAATACTGTAGAACAAACTA
CACGACCACAAAGAAAGGACTCGACAGAAGCAGACAGGACGATGAATTCC
TTCTCCGCACTCACTTCTGTCACTCTTTCACCCCCCCAAAGCAACTACAG
CAACACACAGCCACCATCTCCAAGTCAAGGCAAGTATGATGGCCCCTGAA
GAGACAAAGGTCGCGGCCGGCAGTCCCGGAAGCGCCAGCAATCTGGACAA
ACCCAACACTTCAGCCAAGGTACGTATAGCGGCGACAGGAGATTCCACAT
TTCGCCCTTTCCCCACTCTTAAGGCACGAATGTCTGTGTCTTTGCCCATG
TGGGGTTGCTGGTGTTCATTTATTGTCCGACGGCCCGCAATATCCCTTGT
TACCATGCATGCGGGCGCATAAACCTCTTTTTCCTTAGTTTCATTTGTGA
GAATGCTTGCGAAAGAAATCGTGAATGTCCACCTTTTTCACCTGTGCTTT
CAACCTTGCGAGTGCTTACACCTGCACTAGCACACAATCAACCCTCCCTC
CCTACTCCCCTCCATCATTCGCCTTGAAGGTAAAGCAAATGACGTGGCTG
GAGACCCTTCGTCGAGATGGATGTCTTCCCCTGAAAACTATTGGCTTCTT
CACTGGTGCGTGTAGAAAGGAGAGGGAGGAGAGGAAGAAAGAATGGGGGA
GGGAGAGAGGAGTAGAAACTATGCTGGTGTTATCTGCATACTGCCTGCGA
GATAAATTACTCTACATTCAAATCTTTCCTGCTCTCCTTCCTTCTTCCAT
GTGACCGTTCTTAGGCATGGCTCTTACTATTATTGCCTGCCTGACTTTCG
CTTCCAAGCTCTTGGACTTGAATGTCGTGGGGGCGATCAACCAGGTGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGAGTGAGTGAGGGAGTGA
TTGATTGAATGGAAGAGTGAGTGTGTGGAGTTTTGGGGAAAGGCGTAAGA
TAAGAAAAGAACAGGTTGACATGTAGTCGTCCACCCCTTAGTATTAACGA
CGTATTTGTGAATCATACTTTCTCTTCCGTCCAACCCTCCCTCCCCCTGT
CTCTTGCAGGTTTGGCTTGCCATCTTCGGCCTAACGATGATGCTGCTCGA
GGCATCTACCAGTACCAACTTCGTGTCGAAAAAGGTTTCTCGATGGTTAA
ATGAGAATATGAAGATATTGACATACATGACTGGACGCGGGTTGTTCTAT
TGCTTCCTCGGCACGGTGAGGGCGGGAGTGAGGGAGTGAGTGTAATCTTC
ATCCTTTTTGCGCGCGTCGCTGATTCTGTATGATTCTCTTACCCACCTTC
TTTCCCTCCCCTCTTGTCCTTCAGATCGAGCTAGGCTTCTGGTTCTCTAC
CCTCCACCTGGTTATTGGCATCATCCTCTGCGTCTTGGGCGTAGTAACGA
TCTTTGTTGGATTTGCCTTGGGGATGAAGCTTCGGTCCATCCGTCGGGAT
TTAGCCAGGGAGGACGACGCGCGTAAGGTACGTAAAACCTCAAAGCAGCA
GCATGATGTACTGGATTCTCTTTTCTCTCCCTGTCATGTGTTGTTGGATT
AGCGCTTTTTTGCCTCATCATCTATCCCGGCATTCTCATTTGTCCTTTTC
TCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTC
CCTTCCTCCCTCCCTGCAGACCTTCCAAGATTTCGATGAAGACCAAGACG
GACGTCTGTCAACCTCCGAGCTCGCTCGGCTCTGCCATTCCTTGGGGAGT
AAGCTGACCCACAACGAATTACAAGCAGCCGTTACGACACTGGACGTTAA
CAGGGACGGTTATATCCAAGAGGAGGAGTTCTTGCGGTGGTGGCGGGGGG
ATGCGGAGCTCAAGAAACCGATCGAGGTGTGAGATTATGAGGCGGGAGGG
AGGGGCCGAAGGAAGGCAGGGATTTGTGTGTATAGATGGGTGTTCTGGCG
TGGTGTGTGTGTGTCGGTGGGTGTGCATTGTGTGCATTGAAGGGGAAGGG
AATGCTGGATAGAAAGAGCAAAAGTGAATCAGAGAGAGATTGATCAAGCA
ATGAAAATCATGAAGGCTTATGCATCGATGTGCCCCTGGTCACGGCACAA
AGACATGAGGTTGACAGATTTTCAACCACATAAATACGGCGAAAGAAAAG
CAGATTGAAAATGGGCGTGACAAACCAAAAGCTCTTACCGAGATACAGGA
AGCCAAACCAGAATGAATTATGTGACCAGCAAAAGAAAATTGTACAGGTT
TTGCT back to topCoding sequence (CDS) from alignment at scaffold_6:1144439..1146993- >mRNA_3748 ID=mRNA_3748|Name=jgi.p|Nanoce1779_2|583276|organism=Nannochloropsis oceanica|type=CDS|length=4572bp|location=Sequence derived from alignment at scaffold_6:1144439..1146993- (Nannochloropsis oceanica)
ACCTTCCAAGATTTCGATGAAGACCAAGACGGACGTCTGTCAACCTCCGA
GCTCGCTCGGCTCTGCCATTCCTTGGGGAGTAAGCTGACCCACAACGAAT
TACAAGCAGCCGTTACGACACTGGACGTTAACAGGGACGGTTATATCCAA
GAGGAGGAGTTCTTGCGGTGGTGGCGGGGGGATGCGGAGCTCAAGAAACC
GATCGAGGTGTGAATCGAGCTAGGCTTCTGGTTCTCTACCCTCCACCTGG
TTATTGGCATCATCCTCTGCGTCTTGGGCGTAGTAACGATCTTTGTTGGA
TTTGCCTTGGGGATGAAGCTTCGGTCCATCCGTCGGGATTTAGCCAGGGA
GGACGACGCGCGTAAGGTTTGGCTTGCCATCTTCGGCCTAACGATGATGC
TGCTCGAGGCATCTACCAGTACCAACTTCGTGTCGAAAAAGGTTTCTCGA
TGGTTAAATGAGAATATGAAGATATTGACATACATGACTGGACGCGGGTT
GTTCTATTGCTTCCTCGGCACGGCATGGCTCTTACTATTATTGCCTGCCT
GACTTTCGCTTCCAAGCTCTTGGACTTGAATGTCGTGGGGGCGATCAACC
AGGTAAAGCAAATGACGTGGCTGGAGACCCTTCGTCGAGATGGATGTCTT
CCCCTGAAAACTATTGGCTTCTTCACTGATGATGGCCCCTGAAGAGACAA
AGGTCGCGGCCGGCAGTCCCGGAAGCGCCAGCAATCTGGACAAACCCAAC
ACTTCAGCCAAGACCTTCCAAGATTTCGATGAAGACCAAGACGGACGTCT
GTCAACCTCCGAGCTCGCTCGGCTCTGCCATTCCTTGGGGAGTAAGCTGA
CCCACAACGAATTACAAGCAGCCGTTACGACACTGGACGTTAACAGGGAC
GGTTATATCCAAGAGGAGGAGTTCTTGCGGTGGTGGCGGGGGGATGCGGA
GCTCAAGAAACCGATCGAGGTGTGAATCGAGCTAGGCTTCTGGTTCTCTA
CCCTCCACCTGGTTATTGGCATCATCCTCTGCGTCTTGGGCGTAGTAACG
ATCTTTGTTGGATTTGCCTTGGGGATGAAGCTTCGGTCCATCCGTCGGGA
TTTAGCCAGGGAGGACGACGCGCGTAAGGTTTGGCTTGCCATCTTCGGCC
TAACGATGATGCTGCTCGAGGCATCTACCAGTACCAACTTCGTGTCGAAA
AAGGTTTCTCGATGGTTAAATGAGAATATGAAGATATTGACATACATGAC
TGGACGCGGGTTGTTCTATTGCTTCCTCGGCACGGCATGGCTCTTACTAT
TATTGCCTGCCTGACTTTCGCTTCCAAGCTCTTGGACTTGAATGTCGTGG
GGGCGATCAACCAGGTAAAGCAAATGACGTGGCTGGAGACCCTTCGTCGA
GATGGATGTCTTCCCCTGAAAACTATTGGCTTCTTCACTGATGATGGCCC
CTGAAGAGACAAAGGTCGCGGCCGGCAGTCCCGGAAGCGCCAGCAATCTG
GACAAACCCAACACTTCAGCCAAGACCTTCCAAGATTTCGATGAAGACCA
AGACGGACGTCTGTCAACCTCCGAGCTCGCTCGGCTCTGCCATTCCTTGG
GGAGTAAGCTGACCCACAACGAATTACAAGCAGCCGTTACGACACTGGAC
GTTAACAGGGACGGTTATATCCAAGAGGAGGAGTTCTTGCGGTGGTGGCG
GGGGGATGCGGAGCTCAAGAAACCGATCGAGGTGTGAATCGAGCTAGGCT
TCTGGTTCTCTACCCTCCACCTGGTTATTGGCATCATCCTCTGCGTCTTG
GGCGTAGTAACGATCTTTGTTGGATTTGCCTTGGGGATGAAGCTTCGGTC
CATCCGTCGGGATTTAGCCAGGGAGGACGACGCGCGTAAGGTTTGGCTTG
CCATCTTCGGCCTAACGATGATGCTGCTCGAGGCATCTACCAGTACCAAC
TTCGTGTCGAAAAAGGTTTCTCGATGGTTAAATGAGAATATGAAGATATT
GACATACATGACTGGACGCGGGTTGTTCTATTGCTTCCTCGGCACGGCAT
GGCTCTTACTATTATTGCCTGCCTGACTTTCGCTTCCAAGCTCTTGGACT
TGAATGTCGTGGGGGCGATCAACCAGGTAAAGCAAATGACGTGGCTGGAG
ACCCTTCGTCGAGATGGATGTCTTCCCCTGAAAACTATTGGCTTCTTCAC
TGATGATGGCCCCTGAAGAGACAAAGGTCGCGGCCGGCAGTCCCGGAAGC
GCCAGCAATCTGGACAAACCCAACACTTCAGCCAAGACCTTCCAAGATTT
CGATGAAGACCAAGACGGACGTCTGTCAACCTCCGAGCTCGCTCGGCTCT
GCCATTCCTTGGGGAGTAAGCTGACCCACAACGAATTACAAGCAGCCGTT
ACGACACTGGACGTTAACAGGGACGGTTATATCCAAGAGGAGGAGTTCTT
GCGGTGGTGGCGGGGGGATGCGGAGCTCAAGAAACCGATCGAGGTGTGAA
TCGAGCTAGGCTTCTGGTTCTCTACCCTCCACCTGGTTATTGGCATCATC
CTCTGCGTCTTGGGCGTAGTAACGATCTTTGTTGGATTTGCCTTGGGGAT
GAAGCTTCGGTCCATCCGTCGGGATTTAGCCAGGGAGGACGACGCGCGTA
AGGTTTGGCTTGCCATCTTCGGCCTAACGATGATGCTGCTCGAGGCATCT
ACCAGTACCAACTTCGTGTCGAAAAAGGTTTCTCGATGGTTAAATGAGAA
TATGAAGATATTGACATACATGACTGGACGCGGGTTGTTCTATTGCTTCC
TCGGCACGGCATGGCTCTTACTATTATTGCCTGCCTGACTTTCGCTTCCA
AGCTCTTGGACTTGAATGTCGTGGGGGCGATCAACCAGGTAAAGCAAATG
ACGTGGCTGGAGACCCTTCGTCGAGATGGATGTCTTCCCCTGAAAACTAT
TGGCTTCTTCACTGATGATGGCCCCTGAAGAGACAAAGGTCGCGGCCGGC
AGTCCCGGAAGCGCCAGCAATCTGGACAAACCCAACACTTCAGCCAAGAC
CTTCCAAGATTTCGATGAAGACCAAGACGGACGTCTGTCAACCTCCGAGC
TCGCTCGGCTCTGCCATTCCTTGGGGAGTAAGCTGACCCACAACGAATTA
CAAGCAGCCGTTACGACACTGGACGTTAACAGGGACGGTTATATCCAAGA
GGAGGAGTTCTTGCGGTGGTGGCGGGGGGATGCGGAGCTCAAGAAACCGA
TCGAGGTGTGAATCGAGCTAGGCTTCTGGTTCTCTACCCTCCACCTGGTT
ATTGGCATCATCCTCTGCGTCTTGGGCGTAGTAACGATCTTTGTTGGATT
TGCCTTGGGGATGAAGCTTCGGTCCATCCGTCGGGATTTAGCCAGGGAGG
ACGACGCGCGTAAGGTTTGGCTTGCCATCTTCGGCCTAACGATGATGCTG
CTCGAGGCATCTACCAGTACCAACTTCGTGTCGAAAAAGGTTTCTCGATG
GTTAAATGAGAATATGAAGATATTGACATACATGACTGGACGCGGGTTGT
TCTATTGCTTCCTCGGCACGGCATGGCTCTTACTATTATTGCCTGCCTGA
CTTTCGCTTCCAAGCTCTTGGACTTGAATGTCGTGGGGGCGATCAACCAG
GTAAAGCAAATGACGTGGCTGGAGACCCTTCGTCGAGATGGATGTCTTCC
CCTGAAAACTATTGGCTTCTTCACTGATGATGGCCCCTGAAGAGACAAAG
GTCGCGGCCGGCAGTCCCGGAAGCGCCAGCAATCTGGACAAACCCAACAC
TTCAGCCAAGACCTTCCAAGATTTCGATGAAGACCAAGACGGACGTCTGT
CAACCTCCGAGCTCGCTCGGCTCTGCCATTCCTTGGGGAGTAAGCTGACC
CACAACGAATTACAAGCAGCCGTTACGACACTGGACGTTAACAGGGACGG
TTATATCCAAGAGGAGGAGTTCTTGCGGTGGTGGCGGGGGGATGCGGAGC
TCAAGAAACCGATCGAGGTGTGAATCGAGCTAGGCTTCTGGTTCTCTACC
CTCCACCTGGTTATTGGCATCATCCTCTGCGTCTTGGGCGTAGTAACGAT
CTTTGTTGGATTTGCCTTGGGGATGAAGCTTCGGTCCATCCGTCGGGATT
TAGCCAGGGAGGACGACGCGCGTAAGGTTTGGCTTGCCATCTTCGGCCTA
ACGATGATGCTGCTCGAGGCATCTACCAGTACCAACTTCGTGTCGAAAAA
GGTTTCTCGATGGTTAAATGAGAATATGAAGATATTGACATACATGACTG
GACGCGGGTTGTTCTATTGCTTCCTCGGCACGGCATGGCTCTTACTATTA
TTGCCTGCCTGACTTTCGCTTCCAAGCTCTTGGACTTGAATGTCGTGGGG
GCGATCAACCAGGTAAAGCAAATGACGTGGCTGGAGACCCTTCGTCGAGA
TGGATGTCTTCCCCTGAAAACTATTGGCTTCTTCACTGATGATGGCCCCT
GAAGAGACAAAGGTCGCGGCCGGCAGTCCCGGAAGCGCCAGCAATCTGGA
CAAACCCAACACTTCAGCCAAG back to top
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