jgi.p|Nanoce1779_2|372173, mRNA_3746 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|372173
Unique NamemRNA_3746
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length477
Alignment locationscaffold_6:1132049..1132801 -

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Properties
Property NameValue
TranscriptId372259
TrackFilteredModels2
ProteinId372173
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1132049..1132801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|372173gene_3746Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|372173mRNA_3746-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3746CDS_3746Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3746 ID=mRNA_3746|Name=jgi.p|Nanoce1779_2|372173|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
TCGGAGAAAGTTTACTTTCGTACTTAAACAAACGCGTTCTCTCCACCAAT
AATGTGAGCTGTGAGGCAATGCCGTTGGATCCCTTGTGAGCACTGCACTA
CGCATCGTGAAGCTTTACTGTTTAGACTTGAGGTGCTCCACACTTTCCCC
TGAGGAGCCCTCAAACAACACATGTACTGACTTGAGATGTCTTTTGTTTG
TGTAATGGTCATTTTTTTCTTTACTCTTCCCTTCCTTGTTCTTCCCTCAT
ACTGCCCTTGTGCGCGTTTCAATCTCTTTCATCTCTGTGCTCACTCATCT
TGGTTCTCTCTACTATTTACACACACGCATTTCCCCGTCCTTCATTTAAA
TCAGCTTCTTTTCTCTCTTCTCTCTTCTCATATTCCACTGTTCCTTCCTA
CATTCTCCCACACACCTAGAAACTACCCACTCTCAATATAGTCCTTCATA
ATTTTCTTCCTTCTTCCCTCCCTCTTT
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protein sequence of jgi.p|Nanoce1779_2|372173

>mRNA_3746-protein ID=mRNA_3746-protein|Name=jgi.p|Nanoce1779_2|372173|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MSFVCVMVIFFFTLPFLVLPSYCPCARFNLFHLCAHSSWFSLLFTHTHFP
VLHLNQLLFSLLSSHIPLFLPTFSHTPRNYPLSI*
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mRNA from alignment at scaffold_6:1132049..1132801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3746 ID=mRNA_3746|Name=jgi.p|Nanoce1779_2|372173|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at scaffold_6:1132049..1132801- (Nannochloropsis oceanica)
TCGGAGAAAGTTTACTTTCGTACTTAAACAAACGCGTTCTCTCCACCAAT
AATGTGAGCTGTGAGGCAATGCCGTTGGATCCCTTGTGAGCACTGCACTA
CGCATCGTGAAGCTTTACTGTTTAGACTTGAGGTGCTCCACACTTTCCCC
TGAGGAGCCCTCAAACAACACATGTACTGACTTGAGATGTCTTTTGTTTG
TGTAATGGTCATTTTTTTCTTTACTCTTCCCTTCCTTGTTCTTCCCTCAT
ACTGCCCTTGTGCGCGTTTCAATCTCTTTCATCTCTGTGCTCACTCATCT
TGGTTCTCTCTACTATTTACACACACGCATTTCCCCGTCCTTCATTTGTA
TCATCTCCACTAGCGCTCTATTCTGGCATGCATCATCCTATCCTTTTCCT
CCTTCTCTCTCGATCCCTTCTCCCACTTCCCTAAGACGGACCAGCAGCCA
GACGTGTGACAAAGACTCAAGGAAAAAGTCGTGCACCACCATACACGCGT
AACTTACTAACTTGTTTTTTCAAAATACCTTGGAACTGGGCTCTCTTAAT
CAACCTAGAAGAGACCCGGAGGCCTTCTGACGCCGCCATCGCCCGTACTT
GAGGTGATTCTATTGGCGTGGAGAAATCAGCTTCTTTTCTCTCTTCTCTC
TTCTCATATTCCACTGTTCCTTCCTACATTCTCCCACACACCTAGAAACT
ACCCACTCTCAATATAGTCCTTCATAATTTTCTTCCTTCTTCCCTCCCTC
TTT
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Coding sequence (CDS) from alignment at scaffold_6:1132049..1132801-

>mRNA_3746 ID=mRNA_3746|Name=jgi.p|Nanoce1779_2|372173|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_6:1132049..1132801- (Nannochloropsis oceanica)
AAATCAGCTTCTTTTCTCTCTTCTCTCTTCTCATATTCCACTGTTCCTTC
CTACATTCTCCCACACACCTAGAAACTACCCACTCTCAATATAGATGTCT
TTTGTTTGTGTAATGGTCATTTTTTTCTTTACTCTTCCCTTCCTTGTTCT
TCCCTCATACTGCCCTTGTGCGCGTTTCAATCTCTTTCATCTCTGTGCTC
ACTCATCTTGGTTCTCTCTACTATTTACACACACGCATTTCCCCGTCCTT
CATTTAAATCAGCTTCTTTTCTCTCTTCTCTCTTCTCATATTCCACTGTT
CCTTCCTACATTCTCCCACACACCTAGAAACTACCCACTCTCAATATAGA
TGTCTTTTGTTTGTGTAATGGTCATTTTTTTCTTTACTCTTCCCTTCCTT
GTTCTTCCCTCATACTGCCCTTGTGCGCGTTTCAATCTCTTTCATCTCTG
TGCTCACTCATCTTGGTTCTCTCTACTATTTACACACACGCATTTCCCCG
TCCTTCATTT
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Synonyms
Publications