jgi.p|Nanoce1779_2|553211, mRNA_3743 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553211
Unique Name	mRNA_3743
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1687
Alignment location	scaffold_6:1112687..1114412 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553297
Track	FilteredModels2
ProteinId	553211

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1112687..1114412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553211	gene_3743	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553211	mRNA_3743-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3743	CDS_3743	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1112687..1114412+
coding sequence from alignment at scaffold_6:1112687..1114412+

mRNA sequence

>mRNA_3743 ID=mRNA_3743|Name=jgi.p|Nanoce1779_2|553211|organism=Nannochloropsis oceanica|type=mRNA|length=1687bp
CTGGTAGGGTCCGCGTCAATGACAATTACTAGGATGCTCGGTTCCTCTTC
CTCCAGGCCGGCCTCTATCATGCTGTCCTTGCCTTAGCCCGTTGGAGAAG
CAAAGGTAGGAGGAGGGGATGGTGAGCGCAAGAGTTTGTTTTGTTTCGCA
CGCTGCTTGTATATCGTCGGCATAATTTCTATTTCCTCCTTCTCCTCTTA
CTCCTCCTTATCCTCTTTGTATCTTGGAACGTGCATGTCTTCAAAAATAG
AGCACAATAGGCAATGGCATTGACGGAGCGGCGTTCCTTCCATCAGCGAA
GCCAGCTCCTCCTCCCGGAGCCGCTCAGACGAAGCTAGAGATAAAATTTC
TCCTTGTCTCGACCACACCTGCGGCCACCCAAAGCAACACACACCACACA
CAGAACCTTGCAGACTCTGTGTTTGTAGCGGACGCGGGAGCACCCGGCAA
TTGATTTTGCTTCTGATTAGCCTCCTCACCCATTCTCAGAATCCACTCGT
TGCCACCCACCATCATCATCCATCATTTTGTTCTTCACCCTGCAAGCCTC
CCACTTACCCTGCACCACACATCCAACTTCCACCGACACAACTACACAGA
GGTAGCCATGGACCCATCGACGGACCTTCCCCCTCCTTCCACCACCTCGA
CGCGTGGCCTCATCTCCGAGGTGCAAATCGACGGGGCTGCTTTGCTCCGC
ATCGTCAAGCACTGCGAGGACAACTTGCCAGGGGCCTCCACCGGGGCATT
ATTGGGCCTGGACGTGCCAAAAGAGAATGGTAAGATGGTGATGCAAGTCA
CGTACGCCTTCGCCTTGCCTCGAGGCCGGGACGCGGGCTATCAAGATGAT
AGGCCAGGGCACAACCGACAGGAGGAGGAGGAAAACGAGGAAGAACGCAG
CGAGCTGGCAAAGCACGAATACAAGAAGCACATGATGAAGATGCTTAAAG
AAGTGAATGTGGATAGTAATATGGTAGGTTGGTACCGTACTATGCAATTG
GGGCATTTCTCCGAGGGGGGAAGCAAGGTAGACGCGTCGGGCTTGCGGGC
GCAACGCACGCTGTTTGACGTGCCTCCTGCTTTGGTGGATGAGATGGCCG
AGACGAATATCGTCTTACTCTATGACCCGGTGCAGACAGCAATGGGTGAT
TTGACAGTGAAGGCCTACAGGCACTTGCGGACGCCGACCACGAGGGAGGA
GGTGGAGGGTGTGGTGTCGTTCAAAGACCTTCTGGAGGAAATTCCTGTGG
TGATTCGCAATGCTGGGATTGTGTCTGCCTTCCTTTGGGATATGCAGCAG
GAGACGACCCCCGTGGGGGGGGTGGATGCGGATTTCACAAAGTTGGATTT
GTCGTTCAATCCGTTTTTGTCAAGGAATTTGGAGTTGTTGAGTGAGGAGG
TGGATCGAATGGCTGGACAGTTGGAGAAAATTAAGAGATTTGCTACTGGA
CAGGGAGGGAGGGGCGGCTACCATCAGAGGGAGCATCGTTCGTGGGGGAA
GCGGAGGGAGGAGGAGGAAGAGAGGAATGCAGAGCCTAACCGGGTGGAGA
CTGTGATGACAGCCACACAGATCGATGCGTACTGCTCGCAGATTTCGTCG
TTCAGTAAGAGCGGCGTCTCCAAGCTGTATTTGGTGGGGAGCTTGCATAA
GGAGGCAGGGGTGGAGGGGAGGGAGGGGGACAAGTAG

protein sequence of jgi.p|Nanoce1779_2|553211

>mRNA_3743-protein ID=mRNA_3743-protein|Name=jgi.p|Nanoce1779_2|553211|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MDPSTDLPPPSTTSTRGLISEVQIDGAALLRIVKHCEDNLPGASTGALLG
LDVPKENGKMVMQVTYAFALPRGRDAGYQDDRPGHNRQEEEENEEERSEL
AKHEYKKHMMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQR
TLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVE
GVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVGGVDADFTKLDLSF
NPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRR
EEEEERNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKEA
GVEGREGDK*

mRNA from alignment at scaffold_6:1112687..1114412+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3743 ID=mRNA_3743|Name=jgi.p|Nanoce1779_2|553211|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp|location=Sequence derived from alignment at scaffold_6:1112687..1114412+ (Nannochloropsis oceanica)
CTGGTAGGGTCCGCGTCAATGACAATTACTAGGATGCTCGGTTCCTCTTC
CTCCAGGCCGGCCTCTATCATGCTGTCCTTGCCTTAGCCCGTTGGAGAAG
CAAAGGTAGGAGGAGGGGATGGTGAGCGCAAGAGTTTGTTTTGTTTCGCA
CGCTGCTTGTATATCGTCGGCATAATTTCTATTTCCTCCTTCTCCTCTTA
CTCCTCCTTATCCTCTTTGTATCTTGGAACGTGCATGTCTTCAAAAATAG
AGCACAATAGGCAATGGCATTGACGGAGCGGCGTTCCTTCCATCAGCGAA
GCCAGCTCCTCCTCCCGGAGCCGCTCAGACGAAGCTAGAGATAAAATTTC
TCCTTGTCTCGACCACACCTGCGGCCACCCAAAGCAACACACACCACACA
CAGAACCTTGCAGACTCTGTGTTTGTAGCGGACGCGGGAGCACCCGGCAA
TTGATTTTGCTTCTGATTAGCCTCCTCACCCATTCTCAGAATCCACTCGT
TGCCACCCACCATCATCATCCATCATTTTGTTCTTCACCCTGCAAGCCTC
CCACTTACCCTGCACCACACATCCAACTTCCACCGACACAACTACACAGA
GGTAGCCATGGACCCATCGACGGACCTTCCCCCTCCTTCCACCACCTCGA
CGCGTGGCCTCATCTCCGAGGTGCAAATCGACGGGGCTGCTTTGCTCCGC
ATCGTCAAGCACTGCGAGGACAACTTGCCAGGGGCCTCCACCGGGGCATT
ATTGGGCCTGGACGTGCCAAAAGAGAATGGTAAGATGGTGATGCAAGTCA
CGTACGCCTTCGCCTTGCCTCGAGGCCGGGACGCGGGCTATCAAGATGAT
AGGCCAGGGCACAACCGACAGGAGGAGGAGGAAAACGAGGAAGAACGCAG
CGAGCTGGCAAAGCACGAATACAAGAAGCACATGATGAAGATGCTTAAAG
AAGTGAATGTGGATAGTAATATGGTAGGTTGGTACCGTACTATGCAATTG
GGGCATTTCTCCGAGGGGGGAAGCAAGGTAGACGCGTCGGGCTTGCGGGC
GCAACGCACGCTGTTTGACGTGCCTCCTGCTTTGGTGGATGAGATGGCCG
AGACGAATATCGTCTTACTCTATGACCCGGTGCAGACAGCAATGGGTGAT
TTGACAGTGAAGGCCTACAGGCACTTGCGGACGCCGACCACGAGGGAGGA
GGTGGAGGGTGTGGTGTCGTTCAAAGACCTTCTGGAGGAAATTCCTGTGG
TGATTCGCAATGCTGGGATTGTGTCTGCCTTCCTTTGGGATATGCAGCAG
GAGACGACCCCCGTGGCTGCTGCTCCTGCTGCTGCGACTAGACAAGGAGA
GGTGGGGGGGGTGGATGCGGATTTCACAAAGTTGGATTTGTCGTTCAATC
CGTTTTTGTCAAGGAATTTGGAGTTGTTGAGTGAGGAGGTGGATCGAATG
GCTGGACAGTTGGAGAAAATTAAGAGATTTGCTACTGGACAGGGAGGGAG
GGGCGGCTACCATCAGAGGGAGCATCGTTCGTGGGGGAAGCGGAGGGAGG
AGGAGGAAGAGAGGAATGCAGAGCCTAACCGGGTGGAGACTGTGATGACA
GCCACACAGATCGATGCGTACTGCTCGCAGATTTCGTCGTTCAGTAAGAG
CGGCGTCTCCAAGCTGTATTTGGTGGGGAGCTTGCATAAGGAGGCAGGGG
TGGAGGGGAGGGAGGGGGACAAGTAG

Coding sequence (CDS) from alignment at scaffold_6:1112687..1114412+

>mRNA_3743 ID=mRNA_3743|Name=jgi.p|Nanoce1779_2|553211|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_6:1112687..1114412+ (Nannochloropsis oceanica)
ATGGACCCATCGACGGACCTTCCCCCTCCTTCCACCACCTCGACGCGTGG
CCTCATCTCCGAGGTGCAAATCGACGGGGCTGCTTTGCTCCGCATCGTCA
AGCACTGCGAGGACAACTTGCCAGGGGCCTCCACCGGGGCATTATTGGGC
CTGGACGTGCCAAAAGAGAATGGTAAGATGGTGATGCAAGTCACGTACGC
CTTCGCCTTGCCTCGAGGCCGGGACGCGGGCTATCAAGATGATAGGCCAG
GGCACAACCGACAGGAGGAGGAGGAAAACGAGGAAGAACGCAGCGAGCTG
GCAAAGCACGAATACAAGAAGCACATGATGAAGATGCTTAAAGAAGTGAA
TGTGGATAGTAATATGGTAGGTTGGTACCGTACTATGCAATTGGGGCATT
TCTCCGAGGGGGGAAGCAAGGTAGACGCGTCGGGCTTGCGGGCGCAACGC
ACGCTGTTTGACGTGCCTCCTGCTTTGGTGGATGAGATGGCCGAGACGAA
TATCGTCTTACTCTATGACCCGGTGCAGACAGCAATGGGTGATTTGACAG
TGAAGGCCTACAGGCACTTGCGGACGCCGACCACGAGGGAGGAGGTGGAG
GGTGTGGTGTCGTTCAAAGACCTTCTGGAGGAAATTCCTGTGGTGATTCG
CAATGCTGGGATTGTGTCTGCCTTCCTTTGGGATATGCAGCAGGAGACGA
CCCCCGTGGGGGGGGTGGATGCGGATTTCACAAAGTTGGATTTGTCGTTC
AATCCGTTTTTGTCAAGGAATTTGGAGTTGTTGAGTGAGGAGGTGGATCG
AATGGCTGGACAGTTGGAGAAAATTAAGAGATTTGCTACTGGACAGGGAG
GGAGGGGCGGCTACCATCAGAGGGAGCATCGTTCGTGGGGGAAGCGGAGG
GAGGAGGAGGAAGAGAGGAATGCAGAGCCTAACCGGGTGGAGACTGTGAT
GACAGCCACACAGATCGATGCGTACTGCTCGCAGATTTCGTCGTTCAGTA
AGAGCGGCGTCTCCAAGCTGTATTTGGTGGGGAGCTTGCATAAGGAGGCA
GGGGTGGAGGGGAGGGAGGGGGACAAGTAGATGGACCCATCGACGGACCT
TCCCCCTCCTTCCACCACCTCGACGCGTGGCCTCATCTCCGAGGTGCAAA
TCGACGGGGCTGCTTTGCTCCGCATCGTCAAGCACTGCGAGGACAACTTG
CCAGGGGCCTCCACCGGGGCATTATTGGGCCTGGACGTGCCAAAAGAGAA
TGGTAAGATGGTGATGCAAGTCACGTACGCCTTCGCCTTGCCTCGAGGCC
GGGACGCGGGCTATCAAGATGATAGGCCAGGGCACAACCGACAGGAGGAG
GAGGAAAACGAGGAAGAACGCAGCGAGCTGGCAAAGCACGAATACAAGAA
GCACATGATGAAGATGCTTAAAGAAGTGAATGTGGATAGTAATATGGTAG
GTTGGTACCGTACTATGCAATTGGGGCATTTCTCCGAGGGGGGAAGCAAG
GTAGACGCGTCGGGCTTGCGGGCGCAACGCACGCTGTTTGACGTGCCTCC
TGCTTTGGTGGATGAGATGGCCGAGACGAATATCGTCTTACTCTATGACC
CGGTGCAGACAGCAATGGGTGATTTGACAGTGAAGGCCTACAGGCACTTG
CGGACGCCGACCACGAGGGAGGAGGTGGAGGGTGTGGTGTCGTTCAAAGA
CCTTCTGGAGGAAATTCCTGTGGTGATTCGCAATGCTGGGATTGTGTCTG
CCTTCCTTTGGGATATGCAGCAGGAGACGACCCCCGTGGGGGGGGTGGAT
GCGGATTTCACAAAGTTGGATTTGTCGTTCAATCCGTTTTTGTCAAGGAA
TTTGGAGTTGTTGAGTGAGGAGGTGGATCGAATGGCTGGACAGTTGGAGA
AAATTAAGAGATTTGCTACTGGACAGGGAGGGAGGGGCGGCTACCATCAG
AGGGAGCATCGTTCGTGGGGGAAGCGGAGGGAGGAGGAGGAAGAGAGGAA
TGCAGAGCCTAACCGGGTGGAGACTGTGATGACAGCCACACAGATCGATG
CGTACTGCTCGCAGATTTCGTCGTTCAGTAAGAGCGGCGTCTCCAAGCTG
TATTTGGTGGGGAGCTTGCATAAGGAGGCAGGGGTGGAGGGGAGGGAGGG
GGACAAGTAG

Synonyms

Publications