jgi.p|Nanoce1779_2|583249, mRNA_3740 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583249
Unique Name	mRNA_3740
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2663
Alignment location	scaffold_6:1104574..1107236 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583335
Track	FilteredModels2
ProteinId	583249

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1104574..1107236 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583249	gene_3740	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583249	mRNA_3740-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3740	CDS_3740	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1104574..1107236+
coding sequence from alignment at scaffold_6:1104574..1107236+

mRNA sequence

>mRNA_3740 ID=mRNA_3740|Name=jgi.p|Nanoce1779_2|583249|organism=Nannochloropsis oceanica|type=mRNA|length=2663bp
GGGGGATGTTGAGGGAAAGGTCATTATTTGGACTGGGGCGGGCGAGGGTT
TGCTGAAATACAGCCACAGTAGGCACGCCACTGTGGGCGAAGATTCTCCG
ATGGGCGTGAAACAACTTTCTCATAATCCCATCATGCACCAGCTTTGCTC
GATAGCCGACCTGGAATTTGCTCTTTGGAGCCCTGGCCAAAAAGCTGTAG
TGAAGAAAAAAGTGTCCCACATCATAGCAAGAGTTGCATGGCGCGGCGAC
GGGCAGTGCATGGCCCTGGGGTTCGCAAATGGAGAGGTTTCATTGCGTGA
ATGTACTTCATGGGCTGAAATTGGCAAAATCATGTGCCAGCCTTGCATGG
ACGTGATGACCTGGATGGCCTCGGACGTTCTGGTGGTGGGCAAGAAGCAG
ACGCTAACGGTGTACCACAATGGCATAAAATGCCCAAAGAACATATCTTT
GGATTCAATTGTATTGGAAGCGCAACATGCGCCAAGGTTGAAAGCCACAC
TCCTCCTCCTTCAGGATGGAAATGTGCTTCTATTCCGTGACGAAGACAGC
CCCGCCCAGGCGATTTACCAGAGTGATAAGAGCAGCAGTCCCGTCACAAT
GGCTATAGCTCTTGATCGCCTTGCCCTTGGCTCTGCGGAAGGTATCATCA
GTCTAGTACGCATATTGTCATCCTCTCAGCAGCTAGCTCCTTGTTTAATT
AAAGACGGTTGGCAAGCCAAAGTCGACTCACAGATTGCAAACGGCGACCT
GACTCTCGCCTTCGCGACGCTCCAGGAGCGTGGATCTCCTCTGTCGTTGT
CGTCCTCTTCCTCCTCTCAACCTTCGATTTATTGGGAAGACCAAGTGTTG
GCTGTCGCCCGCGCTGCCCAAGATCCAGAGCTTGTGCGAATGTGCGGGTC
ATTATTGGCTGAAATTCCTCACATTTCTTCCCCATCAATTATAAATGATA
AAGAAGCTTCTATCCGCCGCGGTCGGGCACTCCGCGAGATTTTCTTGAGC
AAACTCCAGGATGTTTCCCTGCTTATGGTCTACTATATTCGGCAGAAGAT
GTGGGCAGAGGCCCTGGCGCTAGCCGAGGAAAAGGCAGGCTTGTTTGACC
CAAGTACTTTCTTGCCATATGCTCAGTGGTTGTTGACAGAGAATCCGCAG
CGCAATTTTGATGAAGCTATGTCCTTCTATTACTGTTATGATAGTGCAGC
GCAGGGCAGGATATTAGTGGAAGTGTTGGTACGGAATGCAGTTGTTGAAG
GCCGCTTTCAGGACGCTTCGTACTACTGCTGGGTGCTAGCGGTAGATGCC
TTTCATTTAGTTGGTAGCAACGAGACGAGCGACGGCAGCTATGAAAAGGA
GTATAACCGTCTCTCCACCCTAGCAGACGTATACGGAGCCTTTCAACACA
TTCATGCATACACTCAAGAGCCCTTTACGACACTCTCCCCTCTCGCTCTC
TTTCAGGTGGCTCGTTTCGTCCTCAACACACTTGGAAGTGGCGAGCCCCC
CTTTGGCATATCCAAGATTGCCACCCTTTACACTATTACAAAGCAAGCCC
AGATATTAGGAGCTCGAATCTTTGCATGCTCCTGCTATTCGAAACTCCTC
ACACTAAATTTGCCTTCGTCTTGGAGAGATGCGGTGGAGGTGGGCATGTT
ACATTTGCAGGCGGTACCGCAAGCAGATGAGGGAAAAGAAGAAGAAGAGT
TGCACCCGGTGTGCTATCAGTGCGGGCACATTAATCCTTTCATAAACCCT
GCAAATCAATTTGTCAAGGAATCATTGATAGTTCGAGGAGGAAGAGCAGA
CAAGAACGAAAAATTGAGCGAGGCCCCTGTAGAGGTCTCTGGAGCCAGAG
GCAGTATCAGCAACTGTAGCCGTAGCAGCAGCAACAAGAAGAGCACCAAC
GGTGATGAGTGGGCGGGGGATGTCTGCGTTAGGTGCGGCCATCCTTTTAT
CCGCTCCATGCTAGGATTTGAAGTCTTGCCCTTGGTGGAATTTATGCCTG
ACCAGGCCTTGTCGGATGAGGAGGTTGTGGCATTGTTGCAGACAGAACCA
CTGATGAACACGAGCTCAGCGGGTGGTGGCATGCATATCTCGTCGCCATC
AACGATGCTTGCGGTGCCACCAACAGCTGTAAAAAGGGTAGAAAGGAGCT
ATATACCCGTCATGGTGGATACTTCAACGCTCCAGGCCTTGCGGGCAGAG
GAGGTGTTCGTCTGTAGGCCCGTGGCGAGCAGTGGGGCGCATGAAATGTT
CATGAAAAGGAGAAGGAAAAAGGACAAAAAAAAATCCATCCCCGACAACT
GCACTTCTAACACATGTCTCCGAAGCCGATTTTTTCGCAATGTGCTGTAT
CCCGACATTCCGCTCGCTTTGTCCCAGCCCGCGCAACGATTCTCTCCCGA
GGAACACTTTGAGATGGCCTACCTCTGGGCCACGGCTACTGCAACATCAT
CTGTAACACAACAAGACAGAAACAATATAGAAGAGGAGAGAAAAATGGGG
GTTCCGATGTGTCCGTTTTCAAGGGTCAGGGACTTGGGAGAGTACGGGCC
CTTGGCGTGAAGCTGCACGGATGTAGATTGGGTACATACCAATATACATG
AGCATAATCACGTGAATATCATCATTGTTCCACCTAATTTACAATTTTGC
TGGATGATGCCAC

protein sequence of jgi.p|Nanoce1779_2|583249

>mRNA_3740-protein ID=mRNA_3740-protein|Name=jgi.p|Nanoce1779_2|583249|organism=Nannochloropsis oceanica|type=polypeptide|length=820bp
MGVKQLSHNPIMHQLCSIADLEFALWSPGQKAVVKKKVSHIIARVAWRGD
GQCMALGFANGEVSLRECTSWAEIGKIMCQPCMDVMTWMASDVLVVGKKQ
TLTVYHNGIKCPKNISLDSIVLEAQHAPRLKATLLLLQDGNVLLFRDEDS
PAQAIYQSDKSSSPVTMAIALDRLALGSAEGIISLVRILSSSQQLAPCLI
KDGWQAKVDSQIANGDLTLAFATLQERGSPLSLSSSSSSQPSIYWEDQVL
AVARAAQDPELVRMCGSLLAEIPHISSPSIINDKEASIRRGRALREIFLS
KLQDVSLLMVYYIRQKMWAEALALAEEKAGLFDPSTFLPYAQWLLTENPQ
RNFDEAMSFYYCYDSAAQGRILVEVLVRNAVVEGRFQDASYYCWVLAVDA
FHLVGSNETSDGSYEKEYNRLSTLADVYGAFQHIHAYTQEPFTTLSPLAL
FQVARFVLNTLGSGEPPFGISKIATLYTITKQAQILGARIFACSCYSKLL
TLNLPSSWRDAVEVGMLHLQAVPQADEGKEEEELHPVCYQCGHINPFINP
ANQFVKESLIVRGGRADKNEKLSEAPVEVSGARGSISNCSRSSSNKKSTN
GDEWAGDVCVRCGHPFIRSMLGFEVLPLVEFMPDQALSDEEVVALLQTEP
LMNTSSAGGGMHISSPSTMLAVPPTAVKRVERSYIPVMVDTSTLQALRAE
EVFVCRPVASSGAHEMFMKRRRKKDKKKSIPDNCTSNTCLRSRFFRNVLY
PDIPLALSQPAQRFSPEEHFEMAYLWATATATSSVTQQDRNNIEEERKMG
VPMCPFSRVRDLGEYGPLA*

mRNA from alignment at scaffold_6:1104574..1107236+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3740 ID=mRNA_3740|Name=jgi.p|Nanoce1779_2|583249|organism=Nannochloropsis oceanica|type=mRNA|length=2663bp|location=Sequence derived from alignment at scaffold_6:1104574..1107236+ (Nannochloropsis oceanica)
GGGGGATGTTGAGGGAAAGGTCATTATTTGGACTGGGGCGGGCGAGGGTT
TGCTGAAATACAGCCACAGTAGGCACGCCACTGTGGGCGAAGATTCTCCG
ATGGGCGTGAAACAACTTTCTCATAATCCCATCATGCACCAGCTTTGCTC
GATAGCCGACCTGGAATTTGCTCTTTGGAGCCCTGGCCAAAAAGCTGTAG
TGAAGAAAAAAGTGTCCCACATCATAGCAAGAGTTGCATGGCGCGGCGAC
GGGCAGTGCATGGCCCTGGGGTTCGCAAATGGAGAGGTTTCATTGCGTGA
ATGTACTTCATGGGCTGAAATTGGCAAAATCATGTGCCAGCCTTGCATGG
ACGTGATGACCTGGATGGCCTCGGACGTTCTGGTGGTGGGCAAGAAGCAG
ACGCTAACGGTGTACCACAATGGCATAAAATGCCCAAAGAACATATCTTT
GGATTCAATTGTATTGGAAGCGCAACATGCGCCAAGGTTGAAAGCCACAC
TCCTCCTCCTTCAGGATGGAAATGTGCTTCTATTCCGTGACGAAGACAGC
CCCGCCCAGGCGATTTACCAGAGTGATAAGAGCAGCAGTCCCGTCACAAT
GGCTATAGCTCTTGATCGCCTTGCCCTTGGCTCTGCGGAAGGTATCATCA
GTCTAGTACGCATATTGTCATCCTCTCAGCAGCTAGCTCCTTGTTTAATT
AAAGACGGTTGGCAAGCCAAAGTCGACTCACAGATTGCAAACGGCGACCT
GACTCTCGCCTTCGCGACGCTCCAGGAGCGTGGATCTCCTCTGTCGTTGT
CGTCCTCTTCCTCCTCTCAACCTTCGATTTATTGGGAAGACCAAGTGTTG
GCTGTCGCCCGCGCTGCCCAAGATCCAGAGCTTGTGCGAATGTGCGGGTC
ATTATTGGCTGAAATTCCTCACATTTCTTCCCCATCAATTATAAATGATA
AAGAAGCTTCTATCCGCCGCGGTCGGGCACTCCGCGAGATTTTCTTGAGC
AAACTCCAGGATGTTTCCCTGCTTATGGTCTACTATATTCGGCAGAAGAT
GTGGGCAGAGGCCCTGGCGCTAGCCGAGGAAAAGGCAGGCTTGTTTGACC
CAAGTACTTTCTTGCCATATGCTCAGTGGTTGTTGACAGAGAATCCGCAG
CGCAATTTTGATGAAGCTATGTCCTTCTATTACTGTTATGATAGTGCAGC
GCAGGGCAGGATATTAGTGGAAGTGTTGGTACGGAATGCAGTTGTTGAAG
GCCGCTTTCAGGACGCTTCGTACTACTGCTGGGTGCTAGCGGTAGATGCC
TTTCATTTAGTTGGTAGCAACGAGACGAGCGACGGCAGCTATGAAAAGGA
GTATAACCGTCTCTCCACCCTAGCAGACGTATACGGAGCCTTTCAACACA
TTCATGCATACACTCAAGAGCCCTTTACGACACTCTCCCCTCTCGCTCTC
TTTCAGGTGGCTCGTTTCGTCCTCAACACACTTGGAAGTGGCGAGCCCCC
CTTTGGCATATCCAAGATTGCCACCCTTTACACTATTACAAAGCAAGCCC
AGATATTAGGAGCTCGAATCTTTGCATGCTCCTGCTATTCGAAACTCCTC
ACACTAAATTTGCCTTCGTCTTGGAGAGATGCGGTGGAGGTGGGCATGTT
ACATTTGCAGGCGGTACCGCAAGCAGATGAGGGAAAAGAAGAAGAAGAGT
TGCACCCGGTGTGCTATCAGTGCGGGCACATTAATCCTTTCATAAACCCT
GCAAATCAATTTGTCAAGGAATCATTGATAGTTCGAGGAGGAAGAGCAGA
CAAGAACGAAAAATTGAGCGAGGCCCCTGTAGAGGTCTCTGGAGCCAGAG
GCAGTATCAGCAACTGTAGCCGTAGCAGCAGCAACAAGAAGAGCACCAAC
GGTGATGAGTGGGCGGGGGATGTCTGCGTTAGGTGCGGCCATCCTTTTAT
CCGCTCCATGCTAGGATTTGAAGTCTTGCCCTTGGTGGAATTTATGCCTG
ACCAGGCCTTGTCGGATGAGGAGGTTGTGGCATTGTTGCAGACAGAACCA
CTGATGAACACGAGCTCAGCGGGTGGTGGCATGCATATCTCGTCGCCATC
AACGATGCTTGCGGTGCCACCAACAGCTGTAAAAAGGGTAGAAAGGAGCT
ATATACCCGTCATGGTGGATACTTCAACGCTCCAGGCCTTGCGGGCAGAG
GAGGTGTTCGTCTGTAGGCCCGTGGCGAGCAGTGGGGCGCATGAAATGTT
CATGAAAAGGAGAAGGAAAAAGGACAAAAAAAAATCCATCCCCGACAACT
GCACTTCTAACACATGTCTCCGAAGCCGATTTTTTCGCAATGTGCTGTAT
CCCGACATTCCGCTCGCTTTGTCCCAGCCCGCGCAACGATTCTCTCCCGA
GGAACACTTTGAGATGGCCTACCTCTGGGCCACGGCTACTGCAACATCAT
CTGTAACACAACAAGACAGAAACAATATAGAAGAGGAGAGAAAAATGGGG
GTTCCGATGTGTCCGTTTTCAAGGGTCAGGGACTTGGGAGAGTACGGGCC
CTTGGCGTGAAGCTGCACGGATGTAGATTGGGTACATACCAATATACATG
AGCATAATCACGTGAATATCATCATTGTTCCACCTAATTTACAATTTTGC
TGGATGATGCCAC

Coding sequence (CDS) from alignment at scaffold_6:1104574..1107236+

>mRNA_3740 ID=mRNA_3740|Name=jgi.p|Nanoce1779_2|583249|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_6:1104574..1107236+ (Nannochloropsis oceanica)
ATGGGCGTGAAACAACTTTCTCATAATCCCATCATGCACCAGCTTTGCTC
GATAGCCGACCTGGAATTTGCTCTTTGGAGCCCTGGCCAAAAAGCTGTAG
TGAAGAAAAAAGTGTCCCACATCATAGCAAGAGTTGCATGGCGCGGCGAC
GGGCAGTGCATGGCCCTGGGGTTCGCAAATGGAGAGGTTTCATTGCGTGA
ATGTACTTCATGGGCTGAAATTGGCAAAATCATGTGCCAGCCTTGCATGG
ACGTGATGACCTGGATGGCCTCGGACGTTCTGGTGGTGGGCAAGAAGCAG
ACGCTAACGGTGTACCACAATGGCATAAAATGCCCAAAGAACATATCTTT
GGATTCAATTGTATTGGAAGCGCAACATGCGCCAAGGTTGAAAGCCACAC
TCCTCCTCCTTCAGGATGGAAATGTGCTTCTATTCCGTGACGAAGACAGC
CCCGCCCAGGCGATTTACCAGAGTGATAAGAGCAGCAGTCCCGTCACAAT
GGCTATAGCTCTTGATCGCCTTGCCCTTGGCTCTGCGGAAGGTATCATCA
GTCTAGTACGCATATTGTCATCCTCTCAGCAGCTAGCTCCTTGTTTAATT
AAAGACGGTTGGCAAGCCAAAGTCGACTCACAGATTGCAAACGGCGACCT
GACTCTCGCCTTCGCGACGCTCCAGGAGCGTGGATCTCCTCTGTCGTTGT
CGTCCTCTTCCTCCTCTCAACCTTCGATTTATTGGGAAGACCAAGTGTTG
GCTGTCGCCCGCGCTGCCCAAGATCCAGAGCTTGTGCGAATGTGCGGGTC
ATTATTGGCTGAAATTCCTCACATTTCTTCCCCATCAATTATAAATGATA
AAGAAGCTTCTATCCGCCGCGGTCGGGCACTCCGCGAGATTTTCTTGAGC
AAACTCCAGGATGTTTCCCTGCTTATGGTCTACTATATTCGGCAGAAGAT
GTGGGCAGAGGCCCTGGCGCTAGCCGAGGAAAAGGCAGGCTTGTTTGACC
CAAGTACTTTCTTGCCATATGCTCAGTGGTTGTTGACAGAGAATCCGCAG
CGCAATTTTGATGAAGCTATGTCCTTCTATTACTGTTATGATAGTGCAGC
GCAGGGCAGGATATTAGTGGAAGTGTTGGTACGGAATGCAGTTGTTGAAG
GCCGCTTTCAGGACGCTTCGTACTACTGCTGGGTGCTAGCGGTAGATGCC
TTTCATTTAGTTGGTAGCAACGAGACGAGCGACGGCAGCTATGAAAAGGA
GTATAACCGTCTCTCCACCCTAGCAGACGTATACGGAGCCTTTCAACACA
TTCATGCATACACTCAAGAGCCCTTTACGACACTCTCCCCTCTCGCTCTC
TTTCAGGTGGCTCGTTTCGTCCTCAACACACTTGGAAGTGGCGAGCCCCC
CTTTGGCATATCCAAGATTGCCACCCTTTACACTATTACAAAGCAAGCCC
AGATATTAGGAGCTCGAATCTTTGCATGCTCCTGCTATTCGAAACTCCTC
ACACTAAATTTGCCTTCGTCTTGGAGAGATGCGGTGGAGGTGGGCATGTT
ACATTTGCAGGCGGTACCGCAAGCAGATGAGGGAAAAGAAGAAGAAGAGT
TGCACCCGGTGTGCTATCAGTGCGGGCACATTAATCCTTTCATAAACCCT
GCAAATCAATTTGTCAAGGAATCATTGATAGTTCGAGGAGGAAGAGCAGA
CAAGAACGAAAAATTGAGCGAGGCCCCTGTAGAGGTCTCTGGAGCCAGAG
GCAGTATCAGCAACTGTAGCCGTAGCAGCAGCAACAAGAAGAGCACCAAC
GGTGATGAGTGGGCGGGGGATGTCTGCGTTAGGTGCGGCCATCCTTTTAT
CCGCTCCATGCTAGGATTTGAAGTCTTGCCCTTGGTGGAATTTATGCCTG
ACCAGGCCTTGTCGGATGAGGAGGTTGTGGCATTGTTGCAGACAGAACCA
CTGATGAACACGAGCTCAGCGGGTGGTGGCATGCATATCTCGTCGCCATC
AACGATGCTTGCGGTGCCACCAACAGCTGTAAAAAGGGTAGAAAGGAGCT
ATATACCCGTCATGGTGGATACTTCAACGCTCCAGGCCTTGCGGGCAGAG
GAGGTGTTCGTCTGTAGGCCCGTGGCGAGCAGTGGGGCGCATGAAATGTT
CATGAAAAGGAGAAGGAAAAAGGACAAAAAAAAATCCATCCCCGACAACT
GCACTTCTAACACATGTCTCCGAAGCCGATTTTTTCGCAATGTGCTGTAT
CCCGACATTCCGCTCGCTTTGTCCCAGCCCGCGCAACGATTCTCTCCCGA
GGAACACTTTGAGATGGCCTACCTCTGGGCCACGGCTACTGCAACATCAT
CTGTAACACAACAAGACAGAAACAATATAGAAGAGGAGAGAAAAATGGGG
GTTCCGATGTGTCCGTTTTCAAGGGTCAGGGACTTGGGAGAGTACGGGCC
CTTGGCGTGA

Synonyms

Publications