jgi.p|Nanoce1779_2|371783, mRNA_3739 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|371783
Unique Name	mRNA_3739
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	765
Alignment location	scaffold_6:1103245..1104009 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	371869
Track	FilteredModels2
ProteinId	371783

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1103245..1104009 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|371783	gene_3739	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|371783	mRNA_3739-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3739	CDS_3739	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1103245..1104009+
coding sequence from alignment at scaffold_6:1103245..1104009+

mRNA sequence

>mRNA_3739 ID=mRNA_3739|Name=jgi.p|Nanoce1779_2|371783|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
GGAGAAGCGAGTAGATTTCTTCCTTTATATGTCCACGGACTCTTGTGCTC
CCTTTCGGCTTCTCATCTGCATGTTCGTAACTTTCCCTCGACTCAAGCCC
AACGTGCTTCTTTTATTGACATCCCTCTACGTTTTCTGGGATCAGTCTTT
TCTTACCCATTTATCTTTTTTCCCGCACCTATCTTGTCCCCGCTCCGTAT
TAACTCTTCTTTTGTTGATATCCTTCTTCCTTCTTCCTGGATCCGTCTTG
TCTTATCCATCCATCCTTTTCCCTGCACCTTCTATTTCTCATGCACCACC
GGGCAATGGCAGCTGCCCTTAAATGCGATGCAGCGACAGCCCTTACGCCC
ACAAGTTTCGCATACGTCGTCCGCCCCCAATTCTAACACGCATCCCAAAG
GCGCCGTCACGGTGACCATCGTGGGTCTATGCTCCTTGGCTGCAGCCTCA
ATGCGCTGGGCACAGTCGCAATATCCCTTAATCTCGGCGCAGCGGCAGCG
TTTCCCGCATCTCGTGCAGGGACACTTCGAAGCTTCAGATAAAGTAGCAC
CCGCGGCTTCGTCGCCACTCACTTCCATTATACACCCACAGGGGGTTTCC
TGACGGATCATAAAATGCTCGCTTGTGCTGCTCATGGTTGTCGTAGCGTG
CGAGAGTGGAAGTAGTGACAAGTGTGCTGTATGATGCAGGTGTGGACAAT
AAGTAAGTGTTTTTATTTATCAAATTCCTGGTGATGGTGCCGCTAAAATA
ATGCTTGCCGGAATA

protein sequence of jgi.p|Nanoce1779_2|371783

>mRNA_3739-protein ID=mRNA_3739-protein|Name=jgi.p|Nanoce1779_2|371783|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
GEASRFLPLYVHGLLCSLSASHLHVRNFPSTQAQRASFIDIPLRFLGSVF
SYPFIFFPAPILSPLRINSSFVDILLPSSWIRLVLSIHPFPCTFYFSCTT
GQWQLPLNAMQRQPLRPQVSHTSSAPNSNTHPKGAVTVTIVGLCSLAAAS
MRWAQSQYPLISAQRQRFPHLVQGHFEASDKVAPAASSPLTSIIHPQGVS
*

mRNA from alignment at scaffold_6:1103245..1104009+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3739 ID=mRNA_3739|Name=jgi.p|Nanoce1779_2|371783|organism=Nannochloropsis oceanica|type=mRNA|length=765bp|location=Sequence derived from alignment at scaffold_6:1103245..1104009+ (Nannochloropsis oceanica)
GGAGAAGCGAGTAGATTTCTTCCTTTATATGTCCACGGACTCTTGTGCTC
CCTTTCGGCTTCTCATCTGCATGTTCGTAACTTTCCCTCGACTCAAGCCC
AACGTGCTTCTTTTATTGACATCCCTCTACGTTTTCTGGGATCAGTCTTT
TCTTACCCATTTATCTTTTTTCCCGCACCTATCTTGTCCCCGCTCCGTAT
TAACTCTTCTTTTGTTGATATCCTTCTTCCTTCTTCCTGGATCCGTCTTG
TCTTATCCATCCATCCTTTTCCCTGCACCTTCTATTTCTCATGCACCACC
GGGCAATGGCAGCTGCCCTTAAATGCGATGCAGCGACAGCCCTTACGCCC
ACAAGTTTCGCATACGTCGTCCGCCCCCAATTCTAACACGCATCCCAAAG
GCGCCGTCACGGTGACCATCGTGGGTCTATGCTCCTTGGCTGCAGCCTCA
ATGCGCTGGGCACAGTCGCAATATCCCTTAATCTCGGCGCAGCGGCAGCG
TTTCCCGCATCTCGTGCAGGGACACTTCGAAGCTTCAGATAAAGTAGCAC
CCGCGGCTTCGTCGCCACTCACTTCCATTATACACCCACAGGGGGTTTCC
TGACGGATCATAAAATGCTCGCTTGTGCTGCTCATGGTTGTCGTAGCGTG
CGAGAGTGGAAGTAGTGACAAGTGTGCTGTATGATGCAGGTGTGGACAAT
AAGTAAGTGTTTTTATTTATCAAATTCCTGGTGATGGTGCCGCTAAAATA
ATGCTTGCCGGAATA

Coding sequence (CDS) from alignment at scaffold_6:1103245..1104009+

>mRNA_3739 ID=mRNA_3739|Name=jgi.p|Nanoce1779_2|371783|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_6:1103245..1104009+ (Nannochloropsis oceanica)
GGAGAAGCGAGTAGATTTCTTCCTTTATATGTCCACGGACTCTTGTGCTC
CCTTTCGGCTTCTCATCTGCATGTTCGTAACTTTCCCTCGACTCAAGCCC
AACGTGCTTCTTTTATTGACATCCCTCTACGTTTTCTGGGATCAGTCTTT
TCTTACCCATTTATCTTTTTTCCCGCACCTATCTTGTCCCCGCTCCGTAT
TAACTCTTCTTTTGTTGATATCCTTCTTCCTTCTTCCTGGATCCGTCTTG
TCTTATCCATCCATCCTTTTCCCTGCACCTTCTATTTCTCATGCACCACC
GGGCAATGGCAGCTGCCCTTAAATGCGATGCAGCGACAGCCCTTACGCCC
ACAAGTTTCGCATACGTCGTCCGCCCCCAATTCTAACACGCATCCCAAAG
GCGCCGTCACGGTGACCATCGTGGGTCTATGCTCCTTGGCTGCAGCCTCA
ATGCGCTGGGCACAGTCGCAATATCCCTTAATCTCGGCGCAGCGGCAGCG
TTTCCCGCATCTCGTGCAGGGACACTTCGAAGCTTCAGATAAAGTAGCAC
CCGCGGCTTCGTCGCCACTCACTTCCATTATACACCCACAGGGGGTTTCC
TGA

Synonyms

Publications