jgi.p|Nanoce1779_2|583247, mRNA_3738 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583247
Unique Name	mRNA_3738
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1771
Alignment location	scaffold_6:1100682..1102779 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583333
Track	FilteredModels2
ProteinId	583247

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1100682..1102779 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583247	gene_3738	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583247	mRNA_3738-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3738	CDS_3738	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1100682..1102779+
coding sequence from alignment at scaffold_6:1100682..1102779+

mRNA sequence

>mRNA_3738 ID=mRNA_3738|Name=jgi.p|Nanoce1779_2|583247|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp
GCAACGACAACACCCCTGGTGAAGTGGGCTGTGGTAGTGGGCATGATTTA
ACAGAGCGTGGCCCCTATTTGTCATTTGTGAGGGGGAAGAAAGGGTGGGT
TTGGTTATTTAGGCGACGTGACAATGGCATGTGGAAGTGGGGAGGTGCTG
TCGCTGCTACCTGCGTACGTGGTGGGGTTGGGTAGTTCTTGGGAATCAAG
CACTGGATAAAGACGCAATGCACAAGCAAGCGGGTCTCATTTCTCCAGCA
TAGTGAAAGCTCGAGGTCACATGCCATGAGTGGCTAAAAAGGCCTATCCC
GGTCGGCTGGTTGACTCCCAAAAATATAGCATTGAAACCGGAGACCTTCA
CCCTCTGCTTCAATTTCCGTCTCAAATCATTCGCCTTTGCACGGCTAGCC
GTGCGCTGCATTTCATACCTGCCGTCCAGTGATATGGTCCACGACATAAC
CATACGCCTAAGACAATCACCTATATGAGGCTAGCCAGAAGCGGGGGGGT
ACTTTGTGCCACTCTGGTTTTTGCCTCCGCTACATCCAGAGCTCTCGAGC
ATCCCGTACATCCCTATTTCCATCAGACCATCACAGCCAGCGGCAGTAGG
AGCTCGTCGTCGCGAAAAAAAATATCTTGGTGTAAGGTATTACAGAGATT
AATCTCTTCATGGAATTTTAAAGCTTGTGCTAATCAGCTACGACGTAAAC
ATGCAGGCACCGCCCACCTCTCTCCAACACCATCTCATCACCTCATCTTC
CCTCCCCCAACCAGGAGGCTTTGAGATAATGGACCGTGACAATCCCACAG
CGATTGTATGCAAGCGTCTTGAAGCACTTGGTGGACAAGGGAAAATTCTC
GCCGAGGCTGTAGTCGTGATAATACACGAAGCACCAGATATTGCAGAGAA
ACTTTTCTCAGTCCCAAGGAAAGACAGAGAATATATTCCCAACCTTCTGG
CACAATATGACCGCGGTGGTCATACCTTGCTATGGTACTCTTTACATAAA
GGGCAGATCGATTTTGCCGATATGTTTCTTGGGCTCTGCGGCGAAAAAGA
ACTCCTGAAAAAGACAATGGCTGGGCAATCCTTGCTTATGGCGGCCGTTG
ACGGAGACCAAGCAGAGGCAGCAACCTGGCTATTGCGCCAATGGGCGGCA
CATTTCGGTCTTTCTCGCATGTATCTATTGATGGAGGAAGAGAGTCTCGC
GGGGTATTCAGCCCTGTGGTGGTGTGGGATGGACGGGCGCGAATCGGCGG
CTAGAGCGTTGTTGGCGTGCGGAGCGGACGACCACCGCCTGGATCGGAAC
AACGTCTCTTGTGTGGAGATTGCCCGACATCGGCAGCAGATTGGCATGCT
AGCCATGTATGAGGAAGCGGAGCGAGCATACTTTTTGACCAAAATGCGGC
AGTTGACCGAAATGGGCCGGGCTGTGGGACCAGAGGTAGAGAGAAATGAG
CACGGGGAGGAAAAGAATACAGAAGATGGCAGCGGCGGTGAAATGAAATT
CAAGGGAGTCACAGCATTTGTTATGCAATATCTGACTTCAGACCTGGCAA
TGGAGCTGGGGCTGTGGATGCGATAGATTGAAGCGAGAAGCTTCACAAGG
GTGTATTTCATACGACACGATGGGTGGAATGTAAACAGGAAAGAGCGCGG
AAATTGTCTTTGTATAGGAAGTAGTAGAACATAGATCGCGCATAGAGACA
AGAGAATAGAGGAAGGGACAATGTAAATGACTGTATTAAAACACTAATGC
ATTAAGTCGTTTTTACGTGTC

protein sequence of jgi.p|Nanoce1779_2|583247

>mRNA_3738-protein ID=mRNA_3738-protein|Name=jgi.p|Nanoce1779_2|583247|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MQAPPTSLQHHLITSSSLPQPGGFEIMDRDNPTAIVCKRLEALGGQGKIL
AEAVVVIIHEAPDIAEKLFSVPRKDREYIPNLLAQYDRGGHTLLWYSLHK
GQIDFADMFLGLCGEKELLKKTMAGQSLLMAAVDGDQAEAATWLLRQWAA
HFGLSRMYLLMEEESLAGYSALWWCGMDGRESAARALLACGADDHRLDRN
NVSCVEIARHRQQIGMLAMYEEAERAYFLTKMRQLTEMGRAVGPEVERNE
HGEEKNTEDGSGGEMKFKGVTAFVMQYLTSDLAMELGLWMR*

mRNA from alignment at scaffold_6:1100682..1102779+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3738 ID=mRNA_3738|Name=jgi.p|Nanoce1779_2|583247|organism=Nannochloropsis oceanica|type=mRNA|length=2098bp|location=Sequence derived from alignment at scaffold_6:1100682..1102779+ (Nannochloropsis oceanica)
GCAACGACAACACCCCTGGTGAAGTGGGCTGTGGTAGTGGGCATGATTTA
ACAGAGCGTGGCCCCTATTTGTCATTTGTGAGGGGGAAGAAAGGGTGGGT
TTGGTTATTTAGGCGACGTGACAATGGCATGTGGAAGTGGGGAGGTGCTG
TCGCTGCTACCTGCGTACGTGGTGGGGTTGGGTAGTTCTTGGGAATCAAG
CACTGGATAAAGACGCAATGCACAAGCAAGCGGGTCTCATTTCTCCAGCA
TAGTGAAAGCTCGAGGTCACATGCCATGAGTGGCTAAAAAGGCCTATCCC
GGTCGGCTGGTTGACTCCCAAAAATATAGCATTGAAACCGGAGACCTTCA
CCCTCTGCTTCAATTTCCGTCTCAAATCATTCGCCTTTGCACGGCTAGCC
GTGCGCTGCATTTCATACCTGCCGTCCAGTGATATGGTCCACGACATAAC
CATACGCCTAAGACAATCACCTATATGAGGCTAGCCAGAAGCGGGGGGGT
ACTTTGTGCCACTCTGGTTTTTGCCTCCGCTACATCCAGAGCTCTCGAGC
ATCCCGTACATCCCTATTTCCATCAGACCATCACAGCCAGCGGCAGTAGG
AGCTCGTCGTCGCGAAAAAAAATATCTTGGTGTAAGGTATTACAGAGATT
AATCTCTTCATGGAATTTTAAAGCTTGTGCTAATCAGCTACGACGTAAAC
ATGCAGGCACCGCCCACCTCTCTCCAACACCATCTCATCACCTCATCTTC
CCTCCCCCAACCAGGAGGCTTTGAGATAATGGACCGTGACAATCCCACAG
CGATTGTATGCAAGCGTCTTGAAGCACTTGGTGGACAAGGGAAAATTCTC
GCCGAGGCTGTAGTCGTGATAATACACGAAGCACCAGATATTGCAGAGAA
ACTTTTCTCAGTCCCAAGGAAAGACAGAGAATATATTCCCAACCTTCTGG
CACAATATGACCGCGGTGGTCATACCTTGCTATGGTACTCTTTACATAAA
GGGCAGATCGATTTTGCCGATATGTTTCTTGGGCTCTGCGGCGAAAAAGA
ACTCCTGAAAAAGACAATGGCTGGGCAATCCTTGCTTATGGTAAGTACCT
CGATGCGCATCTTGAGCAGAAGAGGAAGAGCGCATTGGGTTTGTAGAGAG
ACGAGCGCAAACACAAAGCATACAAATATTTTTGTAGTTTGATTCCCATT
GCCTCCTTTCTTGGTTATAATCCGGGCAAGCATTACGCGAACTTACCGAA
ATGACGATCAGGCGGCTGGACATTAATTTGTTATCGAACTTTCCATTCTG
CCCCTATTCCCCGCATGTACATCTGTTGATGAGTATTCTCGAAAATCCAG
AGGTACAAGTGTGCGTCTTCACAACCGCATAGATACAGAGCTTCACCTAC
ATGCGCACCCTCAACAGGCGGCCGTTGACGGAGACCAAGCAGAGGCAGCA
ACCTGGCTATTGCGCCAATGGGCGGCACATTTCGGTCTTTCTCGCATGTA
TCTATTGATGGAGGAAGAGAGTCTCGCGGGGTATTCAGCCCTGTGGTGGT
GTGGGATGGACGGGCGCGAATCGGCGGCTAGAGCGTTGTTGGCGTGCGGA
GCGGACGACCACCGCCTGGATCGGAACAACGTCTCTTGTGTGGAGATTGC
CCGACATCGGCAGCAGATTGGCATGCTAGCCATGTATGAGGAAGCGGAGC
GAGCATACTTTTTGACCAAAATGCGGCAGTTGACCGAAATGGGCCGGGCT
GTGGGACCAGAGGTAGAGAGAAATGAGCACGGGGAGGAAAAGAATACAGA
AGATGGCAGCGGCGGTGAAATGAAATTCAAGGGAGTCACAGCATTTGTTA
TGCAATATCTGACTTCAGACCTGGCAATGGAGCTGGGGCTGTGGATGCGA
TAGATTGAAGCGAGAAGCTTCACAAGGGTGTATTTCATACGACACGATGG
GTGGAATGTAAACAGGAAAGAGCGCGGAAATTGTCTTTGTATAGGAAGTA
GTAGAACATAGATCGCGCATAGAGACAAGAGAATAGAGGAAGGGACAATG
TAAATGACTGTATTAAAACACTAATGCATTAAGTCGTTTTTACGTGTC

Coding sequence (CDS) from alignment at scaffold_6:1100682..1102779+

>mRNA_3738 ID=mRNA_3738|Name=jgi.p|Nanoce1779_2|583247|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_6:1100682..1102779+ (Nannochloropsis oceanica)
ATGCAGGCACCGCCCACCTCTCTCCAACACCATCTCATCACCTCATCTTC
CCTCCCCCAACCAGGAGGCTTTGAGATAATGGACCGTGACAATCCCACAG
CGATTGTATGCAAGCGTCTTGAAGCACTTGGTGGACAAGGGAAAATTCTC
GCCGAGGCTGTAGTCGTGATAATACACGAAGCACCAGATATTGCAGAGAA
ACTTTTCTCAGTCCCAAGGAAAGACAGAGAATATATTCCCAACCTTCTGG
CACAATATGACCGCGGTGGTCATACCTTGCTATGGTACTCTTTACATAAA
GGGCAGATCGATTTTGCCGATATGTTTCTTGGGCTCTGCGGCGAAAAAGA
ACTCCTGAAAAAGACAATGGCTGGGCAATCCTTGCTTATGGCGGCCGTTG
ACGGAGACCAAGCAGAGGCAGCAACCTGGCTATTGCGCCAATGGGCGGCA
CATTTCGGTCTTTCTCGCATGTATCTATTGATGGAGGAAGAGAGTCTCGC
GGGGTATTCAGCCCTGTGGTGGTGTGGGATGGACGGGCGCGAATCGGCGG
CTAGAGCGTTGTTGGCGTGCGGAGCGGACGACCACCGCCTGGATCGGAAC
AACGTCTCTTGTGTGGAGATTGCCCGACATCGGCAGCAGATTGGCATGCT
AGCCATGTATGAGGAAGCGGAGCGAGCATACTTTTTGACCAAAATGCGGC
AGTTGACCGAAATGGGCCGGGCTGTGGGACCAGAGGTAGAGAGAAATGAG
CACGGGGAGGAAAAGAATACAGAAGATGGCAGCGGCGGTGAAATGAAATT
CAAGGGAGTCACAGCATTTGTTATGCAATATCTGACTTCAGACCTGGCAA
TGGAGCTGGGGCTGTGGATGCGATAGATGCAGGCACCGCCCACCTCTCTC
CAACACCATCTCATCACCTCATCTTCCCTCCCCCAACCAGGAGGCTTTGA
GATAATGGACCGTGACAATCCCACAGCGATTGTATGCAAGCGTCTTGAAG
CACTTGGTGGACAAGGGAAAATTCTCGCCGAGGCTGTAGTCGTGATAATA
CACGAAGCACCAGATATTGCAGAGAAACTTTTCTCAGTCCCAAGGAAAGA
CAGAGAATATATTCCCAACCTTCTGGCACAATATGACCGCGGTGGTCATA
CCTTGCTATGGTACTCTTTACATAAAGGGCAGATCGATTTTGCCGATATG
TTTCTTGGGCTCTGCGGCGAAAAAGAACTCCTGAAAAAGACAATGGCTGG
GCAATCCTTGCTTATGGCGGCCGTTGACGGAGACCAAGCAGAGGCAGCAA
CCTGGCTATTGCGCCAATGGGCGGCACATTTCGGTCTTTCTCGCATGTAT
CTATTGATGGAGGAAGAGAGTCTCGCGGGGTATTCAGCCCTGTGGTGGTG
TGGGATGGACGGGCGCGAATCGGCGGCTAGAGCGTTGTTGGCGTGCGGAG
CGGACGACCACCGCCTGGATCGGAACAACGTCTCTTGTGTGGAGATTGCC
CGACATCGGCAGCAGATTGGCATGCTAGCCATGTATGAGGAAGCGGAGCG
AGCATACTTTTTGACCAAAATGCGGCAGTTGACCGAAATGGGCCGGGCTG
TGGGACCAGAGGTAGAGAGAAATGAGCACGGGGAGGAAAAGAATACAGAA
GATGGCAGCGGCGGTGAAATGAAATTCAAGGGAGTCACAGCATTTGTTAT
GCAATATCTGACTTCAGACCTGGCAATGGAGCTGGGGCTGTGGATGCGAT
AG

Synonyms

Publications