jgi.p|Nanoce1779_2|583244, mRNA_3737 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583244
Unique NamemRNA_3737
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1824
Alignment locationscaffold_6:1098927..1100750 -

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Properties
Property NameValue
TranscriptId583330
TrackFilteredModels2
ProteinId583244
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1098927..1100750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583244gene_3737Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583244mRNA_3737-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3737CDS_3737Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3737 ID=mRNA_3737|Name=jgi.p|Nanoce1779_2|583244|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp
AATAGGGGCCACGCTCTGTTAAATCATGCCCACTACCACAGCCCACTTCA
CCAGGGGTGTTGTCGTTGCTGTTATCCTGGCATTCGTCCTTCGTCCCATC
ACTCGTCCGACCTTTGAGATAATCGAGCCCCTCAATCCTCAAGACCCTCT
CCGCCTGTCCTCTACCACCCCCAGGCACGTTCTCGTGGCGGGTGGAGGGC
TTGCAGGCCTTTCGGCAGCCTTGGAGTTGGCCGAGCGAGGCTTCCAAGTC
ACTGTGCGGGAAGCAGGAGATGTGCTGGGCGGCCGCTTGGCCACGCGGCA
AGTGCAGGTTGCGAAACAGACCTTTGCGATAGAGCATGGCTTCCATGCCT
GGTTTGAAAATTACCACGTCTTTGCCGACATTCGTAAACGTCTTGACATT
AACCACTTTTTCCGGCCCTGGGGTGCGGTGCAATTTATCTTTAAGGACCC
GAAATATAAGCCCGAATCCTTGGCTAGCTCGGGACCCTACCCGTGGAATC
TGGTAAGCATCGTCCTGCGAAGCCCCAACCTCCGCATGATCGACGCCATA
CTGTCCACCCGCCACGTGTTTGACTTGCTCTGGTTCGATCACACTTCTGT
CTGGGCCAAATACGACGAGGAATCTTTCCCTGAATGGGCAGCCGCAAAGG
GCGTGGCAAAAGTTTTTTATGACGTTCTCTACGCCCCTTCCTTGTCCGTG
ACTGTGAACGAACGCCAAAACATCAGTGCCGCGGAGATGCTTACCATGAA
TCACATTTATTTCTTGAGTCACCCCAAGGCGGATCACCGGGAGGTGACGA
ATGAGGACTACGAGACCGCAGTGCTGGGGCCATGGGAGAAACGGCTCGTA
GAAATGGGGGTGGTGATCGAGCGAGGAAGAAGGGTGGGCGGGTTGAAATT
CGGGGAGACAGGGATAAAGGTGATGGAGAAAGAAGGGAAAGAGGGGAAGG
ACGCGTCATTTGATTACGTCGTCTTGGCGACTAATTTGCAGGGTGTTAAG
TCCATCCTTGGCTCCTCGTCTGTCTCTCCTCCGACCGCCCTCCCTTGTCC
TTCCTACATCACCACCACCGCCGCCCTCGAGCAGCTCAAGCACCAAGTCT
CCCACCTGGAAACTGCCCCCTCCTATAAGATCTTTCGCGCATTTTTCGAC
AAGCAATTGACAGGTCCATACGCCCAGGAGATCGTCCTCGAGACACCCGA
TTCAAGCCCAGTGAACCTGATCGCGCAATACCACTTATTAGAGAAAGAAT
CTGCGGATTGGGCCGCCAAGACCGGGGGGAGCGTCATCGAGTTTCACCTG
TATACCTGGGAAGGGGGATATGAGAAGGAGGGAGGGTTTGACGAAGGGGA
GGAGGTGCACGCGCTGTGGAACTTCTTGAGGCCGACCGTGTGTGGGCACA
TTTTGCCCGAAATGTGCTCGGGGAATTTCTCTTTGATGGATGGTTCTATC
GCACACTACGACGACTTTCCTTCGTTCAAAAAGGGTTTGTTCAAGTACAG
ACCAAGGAGTCAGACACCGCGGGAGTTGGGGATGACCCGGCTGGCGTTGG
CCGGCGACTGGCTGTCGACCTCCTTTCCCTCGGCATTGATGGAACGGGCC
GTGGCAACGGGGAGGGAAGCGGCAAATGTGATATTGCTGGAGGAGGGTGT
GAGGCAGGTGCCCGTGCCTGTGACATCCAATTACGGCCCAGGCCTGAGAG
TTCTGGCGGCATAGGATAGGGAGGTGGCAGGCTGTAATGATGGTGGAGCT
GGACGGAGAGAGAGAGCGGACGGGGGGGTGTTTAGGTGGTGGGTTATGAA
TGAGGAGGGAGGCAGGGAGGGAGC
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protein sequence of jgi.p|Nanoce1779_2|583244

>mRNA_3737-protein ID=mRNA_3737-protein|Name=jgi.p|Nanoce1779_2|583244|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MPTTTAHFTRGVVVAVILAFVLRPITRPTFEIIEPLNPQDPLRLSSTTPR
HVLVAGGGLAGLSAALELAERGFQVTVREAGDVLGGRLATRQVQVAKQTF
AIEHGFHAWFENYHVFADIRKRLDINHFFRPWGAVQFIFKDPKYKPESLA
SSGPYPWNLVSIVLRSPNLRMIDAILSTRHVFDLLWFDHTSVWAKYDEES
FPEWAAAKGVAKVFYDVLYAPSLSVTVNERQNISAAEMLTMNHIYFLSHP
KADHREVTNEDYETAVLGPWEKRLVEMGVVIERGRRVGGLKFGETGIKVM
EKEGKEGKDASFDYVVLATNLQGVKSILGSSSVSPPTALPCPSYITTTAA
LEQLKHQVSHLETAPSYKIFRAFFDKQLTGPYAQEIVLETPDSSPVNLIA
QYHLLEKESADWAAKTGGSVIEFHLYTWEGGYEKEGGFDEGEEVHALWNF
LRPTVCGHILPEMCSGNFSLMDGSIAHYDDFPSFKKGLFKYRPRSQTPRE
LGMTRLALAGDWLSTSFPSALMERAVATGREAANVILLEEGVRQVPVPVT
SNYGPGLRVLAA*
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mRNA from alignment at scaffold_6:1098927..1100750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3737 ID=mRNA_3737|Name=jgi.p|Nanoce1779_2|583244|organism=Nannochloropsis oceanica|type=mRNA|length=1824bp|location=Sequence derived from alignment at scaffold_6:1098927..1100750- (Nannochloropsis oceanica)
AATAGGGGCCACGCTCTGTTAAATCATGCCCACTACCACAGCCCACTTCA
CCAGGGGTGTTGTCGTTGCTGTTATCCTGGCATTCGTCCTTCGTCCCATC
ACTCGTCCGACCTTTGAGATAATCGAGCCCCTCAATCCTCAAGACCCTCT
CCGCCTGTCCTCTACCACCCCCAGGCACGTTCTCGTGGCGGGTGGAGGGC
TTGCAGGCCTTTCGGCAGCCTTGGAGTTGGCCGAGCGAGGCTTCCAAGTC
ACTGTGCGGGAAGCAGGAGATGTGCTGGGCGGCCGCTTGGCCACGCGGCA
AGTGCAGGTTGCGAAACAGACCTTTGCGATAGAGCATGGCTTCCATGCCT
GGTTTGAAAATTACCACGTCTTTGCCGACATTCGTAAACGTCTTGACATT
AACCACTTTTTCCGGCCCTGGGGTGCGGTGCAATTTATCTTTAAGGACCC
GAAATATAAGCCCGAATCCTTGGCTAGCTCGGGACCCTACCCGTGGAATC
TGGTAAGCATCGTCCTGCGAAGCCCCAACCTCCGCATGATCGACGCCATA
CTGTCCACCCGCCACGTGTTTGACTTGCTCTGGTTCGATCACACTTCTGT
CTGGGCCAAATACGACGAGGAATCTTTCCCTGAATGGGCAGCCGCAAAGG
GCGTGGCAAAAGTTTTTTATGACGTTCTCTACGCCCCTTCCTTGTCCGTG
ACTGTGAACGAACGCCAAAACATCAGTGCCGCGGAGATGCTTACCATGAA
TCACATTTATTTCTTGAGTCACCCCAAGGCGGATCACCGGGAGGTGACGA
ATGAGGACTACGAGACCGCAGTGCTGGGGCCATGGGAGAAACGGCTCGTA
GAAATGGGGGTGGTGATCGAGCGAGGAAGAAGGGTGGGCGGGTTGAAATT
CGGGGAGACAGGGATAAAGGTGATGGAGAAAGAAGGGAAAGAGGGGAAGG
ACGCGTCATTTGATTACGTCGTCTTGGCGACTAATTTGCAGGGTGTTAAG
TCCATCCTTGGCTCCTCGTCTGTCTCTCCTCCGACCGCCCTCCCTTGTCC
TTCCTACATCACCACCACCGCCGCCCTCGAGCAGCTCAAGCACCAAGTCT
CCCACCTGGAAACTGCCCCCTCCTATAAGATCTTTCGCGCATTTTTCGAC
AAGCAATTGACAGGTCCATACGCCCAGGAGATCGTCCTCGAGACACCCGA
TTCAAGCCCAGTGAACCTGATCGCGCAATACCACTTATTAGAGAAAGAAT
CTGCGGATTGGGCCGCCAAGACCGGGGGGAGCGTCATCGAGTTTCACCTG
TATACCTGGGAAGGGGGATATGAGAAGGAGGGAGGGTTTGACGAAGGGGA
GGAGGTGCACGCGCTGTGGAACTTCTTGAGGCCGACCGTGTGTGGGCACA
TTTTGCCCGAAATGTGCTCGGGGAATTTCTCTTTGATGGATGGTTCTATC
GCACACTACGACGACTTTCCTTCGTTCAAAAAGGGTTTGTTCAAGTACAG
ACCAAGGAGTCAGACACCGCGGGAGTTGGGGATGACCCGGCTGGCGTTGG
CCGGCGACTGGCTGTCGACCTCCTTTCCCTCGGCATTGATGGAACGGGCC
GTGGCAACGGGGAGGGAAGCGGCAAATGTGATATTGCTGGAGGAGGGTGT
GAGGCAGGTGCCCGTGCCTGTGACATCCAATTACGGCCCAGGCCTGAGAG
TTCTGGCGGCATAGGATAGGGAGGTGGCAGGCTGTAATGATGGTGGAGCT
GGACGGAGAGAGAGAGCGGACGGGGGGGTGTTTAGGTGGTGGGTTATGAA
TGAGGAGGGAGGCAGGGAGGGAGC
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Coding sequence (CDS) from alignment at scaffold_6:1098927..1100750-

>mRNA_3737 ID=mRNA_3737|Name=jgi.p|Nanoce1779_2|583244|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at scaffold_6:1098927..1100750- (Nannochloropsis oceanica)
ATGCCCACTACCACAGCCCACTTCACCAGGGGTGTTGTCGTTGCTGTTAT
CCTGGCATTCGTCCTTCGTCCCATCACTCGTCCGACCTTTGAGATAATCG
AGCCCCTCAATCCTCAAGACCCTCTCCGCCTGTCCTCTACCACCCCCAGG
CACGTTCTCGTGGCGGGTGGAGGGCTTGCAGGCCTTTCGGCAGCCTTGGA
GTTGGCCGAGCGAGGCTTCCAAGTCACTGTGCGGGAAGCAGGAGATGTGC
TGGGCGGCCGCTTGGCCACGCGGCAAGTGCAGGTTGCGAAACAGACCTTT
GCGATAGAGCATGGCTTCCATGCCTGGTTTGAAAATTACCACGTCTTTGC
CGACATTCGTAAACGTCTTGACATTAACCACTTTTTCCGGCCCTGGGGTG
CGGTGCAATTTATCTTTAAGGACCCGAAATATAAGCCCGAATCCTTGGCT
AGCTCGGGACCCTACCCGTGGAATCTGGTAAGCATCGTCCTGCGAAGCCC
CAACCTCCGCATGATCGACGCCATACTGTCCACCCGCCACGTGTTTGACT
TGCTCTGGTTCGATCACACTTCTGTCTGGGCCAAATACGACGAGGAATCT
TTCCCTGAATGGGCAGCCGCAAAGGGCGTGGCAAAAGTTTTTTATGACGT
TCTCTACGCCCCTTCCTTGTCCGTGACTGTGAACGAACGCCAAAACATCA
GTGCCGCGGAGATGCTTACCATGAATCACATTTATTTCTTGAGTCACCCC
AAGGCGGATCACCGGGAGGTGACGAATGAGGACTACGAGACCGCAGTGCT
GGGGCCATGGGAGAAACGGCTCGTAGAAATGGGGGTGGTGATCGAGCGAG
GAAGAAGGGTGGGCGGGTTGAAATTCGGGGAGACAGGGATAAAGGTGATG
GAGAAAGAAGGGAAAGAGGGGAAGGACGCGTCATTTGATTACGTCGTCTT
GGCGACTAATTTGCAGGGTGTTAAGTCCATCCTTGGCTCCTCGTCTGTCT
CTCCTCCGACCGCCCTCCCTTGTCCTTCCTACATCACCACCACCGCCGCC
CTCGAGCAGCTCAAGCACCAAGTCTCCCACCTGGAAACTGCCCCCTCCTA
TAAGATCTTTCGCGCATTTTTCGACAAGCAATTGACAGGTCCATACGCCC
AGGAGATCGTCCTCGAGACACCCGATTCAAGCCCAGTGAACCTGATCGCG
CAATACCACTTATTAGAGAAAGAATCTGCGGATTGGGCCGCCAAGACCGG
GGGGAGCGTCATCGAGTTTCACCTGTATACCTGGGAAGGGGGATATGAGA
AGGAGGGAGGGTTTGACGAAGGGGAGGAGGTGCACGCGCTGTGGAACTTC
TTGAGGCCGACCGTGTGTGGGCACATTTTGCCCGAAATGTGCTCGGGGAA
TTTCTCTTTGATGGATGGTTCTATCGCACACTACGACGACTTTCCTTCGT
TCAAAAAGGGTTTGTTCAAGTACAGACCAAGGAGTCAGACACCGCGGGAG
TTGGGGATGACCCGGCTGGCGTTGGCCGGCGACTGGCTGTCGACCTCCTT
TCCCTCGGCATTGATGGAACGGGCCGTGGCAACGGGGAGGGAAGCGGCAA
ATGTGATATTGCTGGAGGAGGGTGTGAGGCAGGTGCCCGTGCCTGTGACA
TCCAATTACGGCCCAGGCCTGAGAGTTCTGGCGGCATAG
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Synonyms
Publications