jgi.p|Nanoce1779_2|583243, mRNA_3736 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583243
Unique NamemRNA_3736
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length490
Alignment locationscaffold_6:1098479..1099012 +

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Properties
Property NameValue
TranscriptId583329
TrackFilteredModels2
ProteinId583243
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1098479..1099012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583243gene_3736Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583243mRNA_3736-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3736CDS_3736Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3736 ID=mRNA_3736|Name=jgi.p|Nanoce1779_2|583243|organism=Nannochloropsis oceanica|type=mRNA|length=490bp
GGGAGGGAAGGAGAGAGGATCGAAGGTGGAGGAGGATGAGCGTGGAAAGG
ACGGAATGATTAGAATGTGTGCTGAATGTCCCCCAAAAAAACGGTTGAAT
GTGGTTGTGATGCATCTCGCGTTATTTTCCCTTTTTTGGGGGTCATTCCC
ATTATCCGTACCTTGGCTTCCTTCCTCCTTGATACTCGCGCGCTCCACGA
GACAAAGATGGAACACGTTCAGTCGTCCTTGTTTTTTTTCCCCGATTTCT
CTGCACATCTTCACTTTCTTTGAGTCTCTCGACTCTCAAGTCTCTTTCCG
CAGAATCTAATTTACAGTGAATTGACTTTCATGTGTTTCAATGACTCAAT
CACCCCTCCCACAAGTAAAAAATACGTTCCACCTGAGTCCCCTCGCCCAC
CCGCGCTCCCTCCCTGCCTCCCTCCTCATTCATAACCCACCACCTAAACA
CCCCCCCGTCCGCTCTCTCTCTCCGTCCAGCTCCACCATC
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protein sequence of jgi.p|Nanoce1779_2|583243

>mRNA_3736-protein ID=mRNA_3736-protein|Name=jgi.p|Nanoce1779_2|583243|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MIRMCAECPPKKRLNVVVMHLALFSLFWGSFPLSVPWLPSSLILARSTRQ
RWNTFSRPCFFSPISLHIFTFFESLDSQVSFRRI*
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mRNA from alignment at scaffold_6:1098479..1099012+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3736 ID=mRNA_3736|Name=jgi.p|Nanoce1779_2|583243|organism=Nannochloropsis oceanica|type=mRNA|length=534bp|location=Sequence derived from alignment at scaffold_6:1098479..1099012+ (Nannochloropsis oceanica)
GGGAGGGAAGGAGAGAGGATCGAAGGTGGAGGAGGATGAGCGTGGAAAGG
ACGGAATGATTAGAATGTGTGCTGAATGTCCCCCAAAAAAACGGTTGAAT
GTGGTTGTGATGCATCTCGCGGTGTTGCTTGATAAGAACCTTTTATTTTA
TTTTTCCCCCTTCAGTTATTTTCCCTTTTTTGGGGGTCATTCCCATTATC
CGTACCTTGGCTTCCTTCCTCCTTGATACTCGCGCGCTCCACGAGACAAA
GATGGAACACGTTCAGTCGTCCTTGTTTTTTTTCCCCGATTTCTCTGCAC
ATCTTCACTTTCTTTGAGTCTCTCGACTCTCAAGTCTCTTTCCGCAGAAT
CTAATTTACAGTGAATTGACTTTCATGTGTTTCAATGACTCAATCACCCC
TCCCACAAGTAAAAAATACGTTCCACCTGAGTCCCCTCGCCCACCCGCGC
TCCCTCCCTGCCTCCCTCCTCATTCATAACCCACCACCTAAACACCCCCC
CGTCCGCTCTCTCTCTCCGTCCAGCTCCACCATC
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Coding sequence (CDS) from alignment at scaffold_6:1098479..1099012+

>mRNA_3736 ID=mRNA_3736|Name=jgi.p|Nanoce1779_2|583243|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_6:1098479..1099012+ (Nannochloropsis oceanica)
ATGATTAGAATGTGTGCTGAATGTCCCCCAAAAAAACGGTTGAATGTGGT
TGTGATGCATCTCGCGTTATTTTCCCTTTTTTGGGGGTCATTCCCATTAT
CCGTACCTTGGCTTCCTTCCTCCTTGATACTCGCGCGCTCCACGAGACAA
AGATGGAACACGTTCAGTCGTCCTTGTTTTTTTTCCCCGATTTCTCTGCA
CATCTTCACTTTCTTTGAGTCTCTCGACTCTCAAGTCTCTTTCCGCAGAA
TCTAAATGATTAGAATGTGTGCTGAATGTCCCCCAAAAAAACGGTTGAAT
GTGGTTGTGATGCATCTCGCGTTATTTTCCCTTTTTTGGGGGTCATTCCC
ATTATCCGTACCTTGGCTTCCTTCCTCCTTGATACTCGCGCGCTCCACGA
GACAAAGATGGAACACGTTCAGTCGTCCTTGTTTTTTTTCCCCGATTTCT
CTGCACATCTTCACTTTCTTTGAGTCTCTCGACTCTCAAGTCTCTTTCCG
CAGAATCTAA
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Synonyms
Publications