jgi.p|Nanoce1779_2|583239, mRNA_3735 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583239
Unique Name	mRNA_3735
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1143
Alignment location	scaffold_6:1096932..1098498 +

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Properties


Property Name	Value
TranscriptId	583325
Track	FilteredModels2
ProteinId	583239

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1096932..1098498 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583239	gene_3735	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583239	mRNA_3735-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3735	CDS_3735	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1096932..1098498+
coding sequence from alignment at scaffold_6:1096932..1098498+

mRNA sequence

>mRNA_3735 ID=mRNA_3735|Name=jgi.p|Nanoce1779_2|583239|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
AGTCAATCTCAAAGGAATGTTTGGTGGTTTGTTAAGTGAGTGTCCCAAAT
CTTCAGGATTTGCCATTTACCCATCATTTGCACTCTGGACCTCAGGATCG
GGGTGTATTTCCTCTGCTGGCTCAGACTTGAAGCACGTCGGCCCGGTCGT
TGGCGAACGAATTGACGGCGTCACAACACGCCTCGCGTCTTGTATTGTTG
TGTGTGGTTGCTTTTTCAACCGTACCTTTAACCCACACCGGACAGATCAT
GCTGCCGACCAATCAGTGGGTGACGCCGCTGCTCCTACTTGCCTGCACCG
TCAACCTCCCCACCCCCGACGCTTTGTTAGTCCCTTCCCTAATACGTAGC
AGCACGACGCCCAGCACTGTCACCACCTTCACGGCCGTCCATGCGCACAG
CTACCGGCAAGCAGCCCTTCAGCTTATGCAGGGTGCAAGCTCCTCTCCTT
CTGCGTCGGTATCGGACCCGTATACGCCCCCAGCCGTCGCCCAGAGCGTT
CATCGAGCTTCTCTCCCGGATCCTGACGCCGCCGATTTGACGGGCACGGG
CGACAGTGTGCGAGTGGTAACCCAGCAAATGAAAAAAAACGATGGACCTG
CTATAACCAATTACGTGGAGATTAGCTTGTCCACAAAGGAAGGCATTTCC
CTCCATGACATCACTCCCCAACTGCACCAGGCCATCCGTGAGGCAAAGAT
TCAGGAAGGGTGGGTCAACGTCGTCAGTCGCCACACCACCACAGCTGTGA
CCATCAATGAATGCGAGTCTCGCCTCATGGACGATATTCGGCAGTATTGT
TTGAAGCTGGCCCCACCATCTCACCCTTACTTACACAACGACATTCACTT
GAGGCCTGCCACGGAGGAGGACAGGAGGAGAGTGATGGGAGGAGGGGAAT
GGAGGGATGTGGAGGAATGGAGAGCGCAGGAACCCAAGAACTGCCATGCG
CATTTACTGTCGATGTTGATTGGGAATTCTGTGAGTGTACCGGTGAGCAG
GGGGAGGTTGAGGATAGGTAGGTGGCAGTCCGTGATGATGGTGGAGCTGG
ACGGAGAGAGAGAGCGGACAGTGGGGATTCAGGTGGTGGGTTATGAGTGA
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGAGAGGAT

protein sequence of jgi.p|Nanoce1779_2|583239

>mRNA_3735-protein ID=mRNA_3735-protein|Name=jgi.p|Nanoce1779_2|583239|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MLPTNQWVTPLLLLACTVNLPTPDALLVPSLIRSSTTPSTVTTFTAVHAH
SYRQAALQLMQGASSSPSASVSDPYTPPAVAQSVHRASLPDPDAADLTGT
GDSVRVVTQQMKKNDGPAITNYVEISLSTKEGISLHDITPQLHQAIREAK
IQEGWVNVVSRHTTTAVTINECESRLMDDIRQYCLKLAPPSHPYLHNDIH
LRPATEEDRRRVMGGGEWRDVEEWRAQEPKNCHAHLLSMLIGNSVSVPVS
RGRLRIGRWQSVMMVELDGERERTVGIQVVGYE*

mRNA from alignment at scaffold_6:1096932..1098498+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3735 ID=mRNA_3735|Name=jgi.p|Nanoce1779_2|583239|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp|location=Sequence derived from alignment at scaffold_6:1096932..1098498+ (Nannochloropsis oceanica)
AGTCAATCTCAAAGGAATGTTTGGTGGTTTGTTAAGTGAGTGTCCCAAAT
CTTCAGGATTTGCCATTTACCCATCATTTGCACTCTGGACCTCAGGATCG
GGGTGTATTTCCTCTGCTGGCTCAGACTTGAAGCACGTCGGCCCGGTCGT
TGGCGAACGAATTGACGGCGTCACAACACGCCTCGCGTCTTGTATTGTTG
TGTGTGGTTGCTTTTTCAACCGTACCTTTAACCCACACCGGACAGATCAT
GCTGCCGACCAATCAGTGGGTGACGCCGCTGCTCCTACTTGCCTGCACCG
TCAACCTCCCCACCCCCGACGCTTTGTTAGTCCCTTCCCTAATACGTAGC
AGCACGACGCCCAGCACTGTCACCACCTTCACGGCCGTCCATGCGCACAG
CTACCGGCAAGCAGCCCTTCAGCTTATGCAGGGTGCAAGCTCCTCTCCTT
CTGCGTCGGTATCGGGTACGTACGCGGCGTGTAGTGCTGCATGTACAGAC
GAAAGCATGTCGTCTTCCTTTCCTTACGTACCTTCATCCTTCCTTACCCC
AGTCTATCCCCATGTGGCTCCTCCTCTTCTGACTTCCCATCCTCATGATA
CTTATGTTTTCAAACATTTCCCACCTCTCACAGACCCGTATACGCCCCCA
GCCGTCGCCCAGAGCGTTCATCGAGCTTCTCTCCCGGATCCTGACGCCGC
CGATTTGACGGGCACGGGCGACAGTGTGCGAGTGGTAACCCAGCAAATGA
AAAAAAACGATGGACCTGCTATAACCAATTACGTGGAGATTAGCTTGTCC
ACAAAGGAAGGTATGCGTGCTATTTGGGGTTCAATTTGGGATCAGGAAGG
ACTCCCAGCTTGATCAGATACTGTTATTTCTTTCCGTTAACGCACCTCCC
TGCTGCCTTACTTTATATGCGCTCTCACCCCTTTTCCCCCTTTCCCTCTT
CCTCTCTCCTTATGTATCTCTCTGTTTGCCCTACCTGATTTGCCCTCGCA
CCTTTTCTCCCTTACCCACACCCTTCCTACCCTTCCTCCTTCCTCCTTCC
TTCCTTCGCTCCGCAGGCATTTCCCTCCATGACATCACTCCCCAACTGCA
CCAGGCCATCCGTGAGGCAAAGATTCAGGAAGGGTGGGTCAACGTCGTCA
GTCGCCACACCACCACAGCTGTGACCATCAATGAATGCGAGTCTCGCCTC
ATGGACGATATTCGGCAGTATTGTTTGAAGCTGGCCCCACCATCTCACCC
TTACTTACACAACGACATTCACTTGAGGCCTGCCACGGAGGAGGACAGGA
GGAGAGTGATGGGAGGAGGGGAATGGAGGGATGTGGAGGAATGGAGAGCG
CAGGAACCCAAGAACTGCCATGCGCATTTACTGTCGATGTTGATTGGGAA
TTCTGTGAGTGTACCGGTGAGCAGGGGGAGGTTGAGGATAGGTAGGTGGC
AGTCCGTGATGATGGTGGAGCTGGACGGAGAGAGAGAGCGGACAGTGGGG
ATTCAGGTGGTGGGTTATGAGTGAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAAGGAGAGAGGAT

Coding sequence (CDS) from alignment at scaffold_6:1096932..1098498+

>mRNA_3735 ID=mRNA_3735|Name=jgi.p|Nanoce1779_2|583239|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_6:1096932..1098498+ (Nannochloropsis oceanica)
ATGCTGCCGACCAATCAGTGGGTGACGCCGCTGCTCCTACTTGCCTGCAC
CGTCAACCTCCCCACCCCCGACGCTTTGTTAGTCCCTTCCCTAATACGTA
GCAGCACGACGCCCAGCACTGTCACCACCTTCACGGCCGTCCATGCGCAC
AGCTACCGGCAAGCAGCCCTTCAGCTTATGCAGGGTGCAAGCTCCTCTCC
TTCTGCGTCGGTATCGGACCCGTATACGCCCCCAGCCGTCGCCCAGAGCG
TTCATCGAGCTTCTCTCCCGGATCCTGACGCCGCCGATTTGACGGGCACG
GGCGACAGTGTGCGAGTGGTAACCCAGCAAATGAAAAAAAACGATGGACC
TGCTATAACCAATTACGTGGAGATTAGCTTGTCCACAAAGGAAGGCATTT
CCCTCCATGACATCACTCCCCAACTGCACCAGGCCATCCGTGAGGCAAAG
ATTCAGGAAGGGTGGGTCAACGTCGTCAGTCGCCACACCACCACAGCTGT
GACCATCAATGAATGCGAGTCTCGCCTCATGGACGATATTCGGCAGTATT
GTTTGAAGCTGGCCCCACCATCTCACCCTTACTTACACAACGACATTCAC
TTGAGGCCTGCCACGGAGGAGGACAGGAGGAGAGTGATGGGAGGAGGGGA
ATGGAGGGATGTGGAGGAATGGAGAGCGCAGGAACCCAAGAACTGCCATG
CGCATTTACTGTCGATGTTGATTGGGAATTCTGTGAGTGTACCGGTGAGC
AGGGGGAGGTTGAGGATAGGTAGGTGGCAGTCCGTGATGATGGTGGAGCT
GGACGGAGAGAGAGAGCGGACAGTGGGGATTCAGGTGGTGGGTTATGAGT
GAATGCTGCCGACCAATCAGTGGGTGACGCCGCTGCTCCTACTTGCCTGC
ACCGTCAACCTCCCCACCCCCGACGCTTTGTTAGTCCCTTCCCTAATACG
TAGCAGCACGACGCCCAGCACTGTCACCACCTTCACGGCCGTCCATGCGC
ACAGCTACCGGCAAGCAGCCCTTCAGCTTATGCAGGGTGCAAGCTCCTCT
CCTTCTGCGTCGGTATCGGACCCGTATACGCCCCCAGCCGTCGCCCAGAG
CGTTCATCGAGCTTCTCTCCCGGATCCTGACGCCGCCGATTTGACGGGCA
CGGGCGACAGTGTGCGAGTGGTAACCCAGCAAATGAAAAAAAACGATGGA
CCTGCTATAACCAATTACGTGGAGATTAGCTTGTCCACAAAGGAAGGCAT
TTCCCTCCATGACATCACTCCCCAACTGCACCAGGCCATCCGTGAGGCAA
AGATTCAGGAAGGGTGGGTCAACGTCGTCAGTCGCCACACCACCACAGCT
GTGACCATCAATGAATGCGAGTCTCGCCTCATGGACGATATTCGGCAGTA
TTGTTTGAAGCTGGCCCCACCATCTCACCCTTACTTACACAACGACATTC
ACTTGAGGCCTGCCACGGAGGAGGACAGGAGGAGAGTGATGGGAGGAGGG
GAATGGAGGGATGTGGAGGAATGGAGAGCGCAGGAACCCAAGAACTGCCA
TGCGCATTTACTGTCGATGTTGATTGGGAATTCTGTGAGTGTACCGGTGA
GCAGGGGGAGGTTGAGGATAGGTAGGTGGCAGTCCGTGATGATGGTGGAG
CTGGACGGAGAGAGAGAGCGGACAGTGGGGATTCAGGTGGTGGGTTATGA
GTGAATGCTGCCGACCAATCAGTGGGTGACGCCGCTGCTCCTACTTGCCT
GCACCGTCAACCTCCCCACCCCCGACGCTTTGTTAGTCCCTTCCCTAATA
CGTAGCAGCACGACGCCCAGCACTGTCACCACCTTCACGGCCGTCCATGC
GCACAGCTACCGGCAAGCAGCCCTTCAGCTTATGCAGGGTGCAAGCTCCT
CTCCTTCTGCGTCGGTATCGGACCCGTATACGCCCCCAGCCGTCGCCCAG
AGCGTTCATCGAGCTTCTCTCCCGGATCCTGACGCCGCCGATTTGACGGG
CACGGGCGACAGTGTGCGAGTGGTAACCCAGCAAATGAAAAAAAACGATG
GACCTGCTATAACCAATTACGTGGAGATTAGCTTGTCCACAAAGGAAGGC
ATTTCCCTCCATGACATCACTCCCCAACTGCACCAGGCCATCCGTGAGGC
AAAGATTCAGGAAGGGTGGGTCAACGTCGTCAGTCGCCACACCACCACAG
CTGTGACCATCAATGAATGCGAGTCTCGCCTCATGGACGATATTCGGCAG
TATTGTTTGAAGCTGGCCCCACCATCTCACCCTTACTTACACAACGACAT
TCACTTGAGGCCTGCCACGGAGGAGGACAGGAGGAGAGTGATGGGAGGAG
GGGAATGGAGGGATGTGGAGGAATGGAGAGCGCAGGAACCCAAGAACTGC
CATGCGCATTTACTGTCGATGTTGATTGGGAATTCTGTGAGTGTACCGGT
GAGCAGGGGGAGGTTGAGGATAGGTAGGTGGCAGTCCGTGATGATGGTGG
AGCTGGACGGAGAGAGAGAGCGGACAGTGGGGATTCAGGTGGTGGGTTAT
GAGTGA

Synonyms

Publications