jgi.p|Nanoce1779_2|371538, mRNA_3733 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|371538
Unique NamemRNA_3733
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1138
Alignment locationscaffold_6:1093762..1095120 -

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Properties
Property NameValue
TranscriptId371624
TrackFilteredModels2
ProteinId371538
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1093762..1095120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|371538gene_3733Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|371538mRNA_3733-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3733CDS_3733Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3733 ID=mRNA_3733|Name=jgi.p|Nanoce1779_2|371538|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp
ACCATCTGCACGCAATTAAATTCAAATTTTGAAGGGTCGTTCGCAAGGGG
CTGCCGTTCGCGGTCTCAACGTCTTCACGGCTCTCGACATCCGGCTTTTG
TCTTTTTTGGTTGACGAAGGTAGAAATACACGAAGGAAAGTATTGTGATC
CTTTTTTAATACGTAGATCATTCTCACACGGACATAATCTAGCACAGGTG
CCCGTCCAGTACTTCGTCCGCGCCGTTGCTTTCACTGCCTTCTCGAAAGC
CAGGCAGCCAACCCATCCACAGACTCTATAAGCCACCGAATATGTCCACC
ACCAAGCCCACTACGCCACCATTACTGGCTATGGGAGGTATGAAGCTGGC
CACCGCCTGGACGGCCCCCTCAGGCGCGGCTACACTCAAGGGAGAGGAAA
AAAACAGTACATTCTTGTCGCCCGGTAAGACCAGTGCCAAGGTCTGCGGA
GTCCATGGCGGCATCAAGACCTTCCGCACAGGATTCTTGTCCCAAATTTA
TATTGGTTGCTGGCGTTGCTGCATGGATCAGGCCTGGAATGCTCCCCCCG
AGATTCATGGTTCCACCCAGTTGGCCCTTTCCGGCGCCCTGGCCGAAATC
AAAGGCCGAAAATCTCGAGAAGAAGCCATTAGTGAAGTCCTAAGTGCTAT
TTTCAAGGAGAGACAGAGGGATAAGAAGGCATGCGAGCGGTTGGAAGAGA
AGGTCGGTTCGCTGGTGGTCGAGAACCGAGAGGTGGGAAAGCAATGGGCG
ATGGCTCAAGTACGGGTAAAGGAGCTGGAGGGGTATGGAGAAAAAGTGAC
TGATCAGCTGGACAAAATGACGGTGCAGGTGGAAAATTTGGATGCAGATA
AGGAGCAGGTAAGGTGAAAGGGAAGAGGGAGAGGGGCGGGAGGGTTCAAG
CCTTTCTTTAAATTAATCATTTTAATTTATAAATTTTAATTCTTCTCTCC
TATGCGTCTCCCATATTTAGTAATTGATCCTTCCCTCCTGCAATTCTTTC
TTCCCTTCATTCGTTCCTTAGGCTCTGAAAACCATTCTGCTCCTCGAAGG
ACAGCTTAAGCAAGGCGAAAAGGATCGAGAGGCGCTGTATTATGACGTGA
GGGAGTATGAAGGGCAAATCAAGGAGTTGGAAAGCCGA
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protein sequence of jgi.p|Nanoce1779_2|371538

>mRNA_3733-protein ID=mRNA_3733-protein|Name=jgi.p|Nanoce1779_2|371538|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MSTTKPTTPPLLAMGGMKLATAWTAPSGAATLKGEEKNSTFLSPGKTSAK
VCGVHGGIKTFRTGFLSQIYIGCWRCCMDQAWNAPPEIHGSTQLALSGAL
AEIKGRKSREEAISEVLSAIFKERQRDKKACERLEEKVGSLVVENREVGK
QWAMAQVRVKELEGYGEKVTDQLDKMTVQVENLDADKEQVR*
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mRNA from alignment at scaffold_6:1093762..1095120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3733 ID=mRNA_3733|Name=jgi.p|Nanoce1779_2|371538|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at scaffold_6:1093762..1095120- (Nannochloropsis oceanica)
ACCATCTGCACGCAATTAAATTCAAATTTTGAAGGGTCGTTCGCAAGGGG
CTGCCGTTCGCGGTCTCAACGTCTTCACGGCTCTCGACATCCGGCTTTTG
TCTTTTTTGGTTGACGAAGGTAGAAATACACGAAGGAAAGTATTGTGATC
CTTTTTTAATACGTAGATCATTCTCACACGGACATAATCTAGCACAGGTG
CCCGTCCAGTACTTCGTCCGCGCCGTTGCTTTCACTGCCTTCTCGAAAGC
CAGGCAGCCAACCCATCCACAGACTCTATAAGCCACCGAATATGTCCACC
ACCAAGCCCACTACGCCACCATTACTGGCTATGGGAGGTATGAAGCTGGC
CACCGCCTGGACGGCCCCCTCAGGCGCGGCTACACTCAAGGGAGAGGAAA
AAAACAGTACATTCTTGTCGCCCGGTAAGACCAGTGCCAAGGTCTGCGGA
GTCCATGGCGGCATCAAGACCTTCCGCACAGGATTCTTGTCCCAAATTTA
TATTGGTTGCTGGCGTTGCTGCATGGATCAGGTGTGCATTGTGTGCTTAC
GGGAAGGTGTCGATCTGTGGGATATGTCTGCATTGTTATGATGGCGGGAT
GATGGACTCCAGATATGAGATGGATGAGGGTTTGGTGGACGACATGCTTT
CAACATATGCACAAACCAGAAATGTAGCCAATTCTTTCCTTCTTACGCAC
CCCCACTCACCATTTCTTTCGCTTTACCCTCCCTCCCTCCCGCGTTCGAT
AGGCCTGGAATGCTCCCCCCGAGATTCATGGTTCCACCCAGTTGGCCCTT
TCCGGCGCCCTGGCCGAAATCAAAGGCCGAAAATCTCGAGAAGAAGCCAT
TAGTGAAGTCCTAAGTGCTATTTTCAAGGAGAGACAGAGGGATAAGAAGG
CATGCGAGCGGTTGGAAGAGAAGGTCGGTTCGCTGGTGGTCGAGAACCGA
GAGGTGGGAAAGCAATGGGCGATGGCTCAAGTACGGGTAAAGGAGCTGGA
GGGGTATGGAGAAAAAGTGACTGATCAGCTGGACAAAATGACGGTGCAGG
TGGAAAATTTGGATGCAGATAAGGAGCAGGTAAGGTGAAAGGGAAGAGGG
AGAGGGGCGGGAGGGTTCAAGCCTTTCTTTAAATTAATCATTTTAATTTA
TAAATTTTAATTCTTCTCTCCTATGCGTCTCCCATATTTAGTAATTGATC
CTTCCCTCCTGCAATTCTTTCTTCCCTTCATTCGTTCCTTAGGCTCTGAA
AACCATTCTGCTCCTCGAAGGACAGCTTAAGCAAGGCGAAAAGGATCGAG
AGGCGCTGTATTATGACGTGAGGGAGTATGAAGGGCAAATCAAGGAGTTG
GAAAGCCGA
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Coding sequence (CDS) from alignment at scaffold_6:1093762..1095120-

>mRNA_3733 ID=mRNA_3733|Name=jgi.p|Nanoce1779_2|371538|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_6:1093762..1095120- (Nannochloropsis oceanica)
GCCTGGAATGCTCCCCCCGAGATTCATGGTTCCACCCAGTTGGCCCTTTC
CGGCGCCCTGGCCGAAATCAAAGGCCGAAAATCTCGAGAAGAAGCCATTA
GTGAAGTCCTAAGTGCTATTTTCAAGGAGAGACAGAGGGATAAGAAGGCA
TGCGAGCGGTTGGAAGAGAAGGTCGGTTCGCTGGTGGTCGAGAACCGAGA
GGTGGGAAAGCAATGGGCGATGGCTCAAGTACGGGTAAAGGAGCTGGAGG
GGTATGGAGAAAAAGTGACTGATCAGCTGGACAAAATGACGGTGCAGGTG
GAAAATTTGGATGCAGATAAGGAGCAGGTAAGGTGAATGTCCACCACCAA
GCCCACTACGCCACCATTACTGGCTATGGGAGGTATGAAGCTGGCCACCG
CCTGGACGGCCCCCTCAGGCGCGGCTACACTCAAGGGAGAGGAAAAAAAC
AGTACATTCTTGTCGCCCGGTAAGACCAGTGCCAAGGTCTGCGGAGTCCA
TGGCGGCATCAAGACCTTCCGCACAGGATTCTTGTCCCAAATTTATATTG
GTTGCTGGCGTTGCTGCATGGATCAGGCCTGGAATGCTCCCCCCGAGATT
CATGGTTCCACCCAGTTGGCCCTTTCCGGCGCCCTGGCCGAAATCAAAGG
CCGAAAATCTCGAGAAGAAGCCATTAGTGAAGTCCTAAGTGCTATTTTCA
AGGAGAGACAGAGGGATAAGAAGGCATGCGAGCGGTTGGAAGAGAAGGTC
GGTTCGCTGGTGGTCGAGAACCGAGAGGTGGGAAAGCAATGGGCGATGGC
TCAAGTACGGGTAAAGGAGCTGGAGGGGTATGGAGAAAAAGTGACTGATC
AGCTGGACAAAATGACGGTGCAGGTGGAAAATTTGGATGCAGATAAGGAG
CAGGTAAGGTGAATGTCCACCACCAAGCCCACTACGCCACCATTACTGGC
TATGGGAGGTATGAAGCTGGCCACCGCCTGGACGGCCCCCTCAGGCGCGG
CTACACTCAAGGGAGAGGAAAAAAACAGTACATTCTTGTCGCCCGGTAAG
ACCAGTGCCAAGGTCTGCGGAGTCCATGGCGGCATCAAGACCTTCCGCAC
AGGATTCTTGTCCCAAATTTATATTGGTTGCTGGCGTTGCTGCATGGATC
AG
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Synonyms
Publications