jgi.p|Nanoce1779_2|583220, mRNA_3732 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583220
Unique NamemRNA_3732
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length847
Alignment locationscaffold_6:1091772..1092745 -

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Properties
Property NameValue
TranscriptId583306
TrackFilteredModels2
ProteinId583220
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1091772..1092745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583220gene_3732Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583220mRNA_3732-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3732CDS_3732Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3732 ID=mRNA_3732|Name=jgi.p|Nanoce1779_2|583220|organism=Nannochloropsis oceanica|type=mRNA|length=847bp
AGATCAGCGTCGTCGCGCATATGAATGGATCAGAGCGGGTGACTTTCACG
ATGTACAGGTCCGACCGTTTCCAGAAGGTCATGGAGCGTTACTTATCCAT
GAAGAGCATCGATGCCCCCTTGGATGAGGTGCGATTTGTGGTAGACAATC
ATCACCACACATTGGATCCTGAATTGACTCCAGACGATTTTAGATTGGAA
GAAGGGGCGACTATAAGTGTACGTGTGCCTGCCAAGCCTTTGCCGGAGCC
GGTGATGGGAAGGGAAGGAGAGAGGGAGGAGGAAGGAGAAGAGGGAAAAA
AGAAAGGGAAGGAGGCGGAGGAGATGGATCCGTGCATGTAAGAAAGAGGC
TGACGAGGGGGTAATGGGATAGATAAGTTGAGGCCCTGATGATAGAGGAT
AGGTCAAACAAAGAAGGAAAGAATGGCTGGAAGCTATAAATGCATGGAAA
AAATTGGCTGAAGACAATGCTGTTTCGTGAATATATTCGGTGATAAAATT
TGAAGGCCTGTGCGGTCAGCGAAGGAGAAGAGATTGGAAGAAACTTTACA
AATAGAGTTGATGGAAATTAAATGTCATTCATGTCAAAGTGTGTTCGTGC
TCTGAGAAACTGGAATATCGCAGTCTGGGTGGAAGGAGAGGGCCAGGCAT
CACGAGTGGACGGAAAGTGGGAAGGAAAGGGAAGTGAATCAGACAAAGAA
AGTTTACAAAAGAGATAATAGGGAACAGAAGATATGTTATATCGACTGAG
TTGTCTATGATTCGGGAAGAAGAGGGAAATCAATAAAAGGAGGGGGGAGG
TTGTTTGTTGGGGAAACCATGGCGAAGTGCACCCAAAAGAAGCGTTT
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protein sequence of jgi.p|Nanoce1779_2|583220

>mRNA_3732-protein ID=mRNA_3732-protein|Name=jgi.p|Nanoce1779_2|583220|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MNGSERVTFTMYRSDRFQKVMERYLSMKSIDAPLDEVRFVVDNHHHTLDP
ELTPDDFRLEEGATISVRVPAKPLPEPVMGREGEREEEGEEGKKKGKEAE
EMDPCM*
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mRNA from alignment at scaffold_6:1091772..1092745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3732 ID=mRNA_3732|Name=jgi.p|Nanoce1779_2|583220|organism=Nannochloropsis oceanica|type=mRNA|length=974bp|location=Sequence derived from alignment at scaffold_6:1091772..1092745- (Nannochloropsis oceanica)
AGATCAGCGTCGTCGCGCATATGAATGGATCAGAGGTTCGTTCGGTTTGA
TTTTTCTGCCCCCTCCCCTCCCCGCGCTTTCGGTCTACGACTCACCCGCC
CTCCATCTCTTTCTCCCTCCTTCCTTCCCTTCCTCTTTGCCTGCATTTCT
TTTCCCATCCAGCGGGTGACTTTCACGATGTACAGGTCCGACCGTTTCCA
GAAGGTCATGGAGCGTTACTTATCCATGAAGAGCATCGATGCCCCCTTGG
ATGAGGTGCGATTTGTGGTAGACAATCATCACCACACATTGGATCCTGAA
TTGACTCCAGACGATTTTAGATTGGAAGAAGGGGCGACTATAAGTGTACG
TGTGCCTGCCAAGCCTTTGCCGGAGCCGGTGATGGGAAGGGAAGGAGAGA
GGGAGGAGGAAGGAGAAGAGGGAAAAAAGAAAGGGAAGGAGGCGGAGGAG
ATGGATCCGTGCATGTAAGAAAGAGGCTGACGAGGGGGTAATGGGATAGA
TAAGTTGAGGCCCTGATGATAGAGGATAGGTCAAACAAAGAAGGAAAGAA
TGGCTGGAAGCTATAAATGCATGGAAAAAATTGGCTGAAGACAATGCTGT
TTCGTGAATATATTCGGTGATAAAATTTGAAGGCCTGTGCGGTCAGCGAA
GGAGAAGAGATTGGAAGAAACTTTACAAATAGAGTTGATGGAAATTAAAT
GTCATTCATGTCAAAGTGTGTTCGTGCTCTGAGAAACTGGAATATCGCAG
TCTGGGTGGAAGGAGAGGGCCAGGCATCACGAGTGGACGGAAAGTGGGAA
GGAAAGGGAAGTGAATCAGACAAAGAAAGTTTACAAAAGAGATAATAGGG
AACAGAAGATATGTTATATCGACTGAGTTGTCTATGATTCGGGAAGAAGA
GGGAAATCAATAAAAGGAGGGGGGAGGTTGTTTGTTGGGGAAACCATGGC
GAAGTGCACCCAAAAGAAGCGTTT
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Coding sequence (CDS) from alignment at scaffold_6:1091772..1092745-

>mRNA_3732 ID=mRNA_3732|Name=jgi.p|Nanoce1779_2|583220|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_6:1091772..1092745- (Nannochloropsis oceanica)
CGGGTGACTTTCACGATGTACAGGTCCGACCGTTTCCAGAAGGTCATGGA
GCGTTACTTATCCATGAAGAGCATCGATGCCCCCTTGGATGAGGTGCGAT
TTGTGGTAGACAATCATCACCACACATTGGATCCTGAATTGACTCCAGAC
GATTTTAGATTGGAAGAAGGGGCGACTATAAGTGTACGTGTGCCTGCCAA
GCCTTTGCCGGAGCCGGTGATGGGAAGGGAAGGAGAGAGGGAGGAGGAAG
GAGAAGAGGGAAAAAAGAAAGGGAAGGAGGCGGAGGAGATGGATCCGTGC
ATGTAAATGAATGGATCAGAGCGGGTGACTTTCACGATGTACAGGTCCGA
CCGTTTCCAGAAGGTCATGGAGCGTTACTTATCCATGAAGAGCATCGATG
CCCCCTTGGATGAGGTGCGATTTGTGGTAGACAATCATCACCACACATTG
GATCCTGAATTGACTCCAGACGATTTTAGATTGGAAGAAGGGGCGACTAT
AAGTGTACGTGTGCCTGCCAAGCCTTTGCCGGAGCCGGTGATGGGAAGGG
AAGGAGAGAGGGAGGAGGAAGGAGAAGAGGGAAAAAAGAAAGGGAAGGAG
GCGGAGGAGATGGATCCGTGCATGTAAATGAATGGATCAGAG
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Synonyms
Publications