jgi.p|Nanoce1779_2|583211, mRNA_3730 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583211
Unique Name	mRNA_3730
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1301
Alignment location	scaffold_6:1086455..1088747 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583297
Track	FilteredModels2
ProteinId	583211

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1086455..1088747 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583211	gene_3730	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583211	mRNA_3730-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3730	CDS_3730	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1086455..1088747+
coding sequence from alignment at scaffold_6:1086455..1088747+

mRNA sequence

>mRNA_3730 ID=mRNA_3730|Name=jgi.p|Nanoce1779_2|583211|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
AGGCAACGCTCTCCCAGCAGCATCAAAGTCAATCATGGCCATGCCCTGCA
GCAGCAGCCGCCGAAAGCCTTTAGTCCTGCTCCTTTCGGCCTTCCTGGCC
CTCTTAATGCCTACCACCCTGGCATTTAACTTCTTCCCGACGCGCTCCTC
GGGCGCAGCTCTCAAGGCCGGTGGCCCCTTGGCCAAGCTTAAGACAGACC
TCCTCTCCAAAGCGGAAGAGGTCAACCGTGGGCTGGAATCCACGCCCGAG
AAGGAAGAAGCCATCCTCAGCCTCATCAAGACCATCGAGAAGAAGAACCC
CACCAAGACGCCCACCAAATCCCCGCTCATTACCGCGCGCTGGCGTTTAG
TGTACACGACCAGCGAGTCCATCTTAGGGAAGACTCGGCCGGCTTTGTTC
AGACCAGTAGGCCCCATCTATCAGTACATCGACCTTGCCAAGGGCACGGC
CAGGAACGAAGAGCAAATCCGACCCATTCCCTTCCTCCCCGCGATCGACG
AGGCCATCGACGCCACCATCGAACCGGCCTCCCCCCAACGGGTCAATGTG
TTTTTCCAACGGCTTATGATTGGCCCTCTCAATGTCAAGTTCCAGAGCTC
TAATTACCTGGATACGACCTACCTGGATCAAGAAATGAGAATCTCGAGAG
GTGGGCGCGGCAACGTCTTCGTGCTCGTGCGTGACGATCCAGCGACCGCG
ACGAATCGATTATGATCCCATATCGTAATCGGAGCACAAAGTAAAGTAGT
TCAGCCACAGAAGAAATAAGACGATGGAATGAATTCAGCGGTAATTACCA
ACCATAAAGGGATCGAGTCGTCCGTTTGATGGTTGTCGTACCGTTTTGTT
AGCTTGACTCATGATCTCCTTTCTTTCGTTCTCGACGTCCGAAGCCGTTG
GTTTCATTCCTCAATGTCGCCTCCCTCCCTCGTCTTTCACTGCGCTCTAC
CCTCGCCAAGCACTCTTCTCCACCATCCCCTGTCATCTGTTTTGTCATAA
TCATCGCTTTAAGCGAGATTGCACACGTACGTGGCCCCTCTCTCACCCCC
TTGGTCGTCTGAGACCACGCAATGCGCTCCTCTCCCTCCATCCCTCCCTC
TCTCCCTCCCTCCCTACAACGACGCCACATATTTTTTGACCGCTTCAATC
TGCGCCTCCACCGATGACTTGGCCGTCCCTCCTGGCGCATTCTTTCTCTC
CACACTCCTCTCGTACGACCATACCTCCTCCGCCACGTCATCGGCAAAGG
AGGGATGGAGGGCCTGTAGATCTGCTGCCGATAGGGAGGAGAGAGCCACC
C

protein sequence of jgi.p|Nanoce1779_2|583211

>mRNA_3730-protein ID=mRNA_3730-protein|Name=jgi.p|Nanoce1779_2|583211|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MAMPCSSSRRKPLVLLLSAFLALLMPTTLAFNFFPTRSSGAALKAGGPLA
KLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTKTPTKSPLIT
ARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPF
LPAIDEAIDATIEPASPQRVNVFFQRLMIGPLNVKFQSSNYLDTTYLDQE
MRISRGGRGNVFVLVRDDPATATNRL*

mRNA from alignment at scaffold_6:1086455..1088747+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3730 ID=mRNA_3730|Name=jgi.p|Nanoce1779_2|583211|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at scaffold_6:1086455..1088747+ (Nannochloropsis oceanica)
AGGCAACGCTCTCCCAGCAGCATCAAAGTCAATCATGGCCATGCCCTGCA
GCAGCAGCCGCCGAAAGCCTTTAGTCCTGCTCCTTTCGGCCTTCCTGGCC
CTCTTAATGCCTACCACCCTGGCATTTAACTTCTTCCCGACGCGCTCCTC
GGGCGCAGCTCTCAAGGCCGGTGGCCCCTTGGCCAAGGTATGTGTGTACT
TATTATGGGATTATGGGGGAATAACTTGTGGGTGGGGGCTTGGTGGAGGA
ATTTCGTTAGGAATGGGATGGGGTGCAGATGGAGGGTGGAAGGAAGTAGG
AGCTTGGGGCTCGCGTCCTGGGCGTGGAGGGAGGGAAAAAGGGAAAGAGG
GAGTGGAGCACAGCAGTTTTATGGAACACAGGCCGGAACAAACATGTGCC
ATTCGGCTCAGGACACAGGGGGGCATGATTCAAATGCATTTCACCTAAAG
GACGGTGCAGCATGCACTGTACGTCTCTTCACGTGGCACAGACGGCTCCG
CTTGATTTCACCCATCATCTCCCGCACACGCACCCTTACACAAACCCCAA
TAGCTTAAGACAGACCTCCTCTCCAAAGCGGAAGAGGTCAACCGTGGGCT
GGAATCCACGCCCGAGAAGGAAGAAGCCATCCTCAGCCTCATCAAGACCA
TCGAGAAGAAGAACCCCACCAAGACGTACGTATGAGACGCTCCGTCCCTC
GTCACCTCTTTTCTTGTATCACCTCTTGCTCCTTGGGTTCTCTTTAATCT
GGATATATGTCGCTGCTAATTGGCGCGTTCTACAACTGCGTCTACACATC
CAGGAAACCGACTCGGGCAAGCCAACTCATCCTCCTTTCCTCCCTCCCTC
CCCTCGTCCCTCCACCCTTCCGTCTGCTTCCTCAGGCCCACCAAATCCCC
GCTCATTACCGCGCGCTGGCGTTTAGTGTACACGACCAGCGAGTCCATCT
TAGGGAAGACTCGGCCGGCTTTGTTCAGACCAGTAGGCCCCATCTATCAG
TACATCGACCTTGCCAAGGGCACGGCCAGGTGAGGAAGGGAGGCAAGGAG
GGAGAGAAGAGTGAAGAAAATGATGCGTGCATGCATAGGCGTATGATAAA
TATGTTCACAGTGAGCAGACACACTTACGCCCTCCCCCTTCCTCGCTCTC
CCTCCCTCCCACCCTCCCGCCCTCCCTCCCGCCCTCCGTCAGGAACGAAG
AGCAAATCCGACCCATTCCCTTCCTCCCCGCGATCGACGAGGCCATCGAC
GCCACCATCGAACCGGCCTCCCCCCAACGGGTCAATGTGTTTTTCCAACG
GCTTATGATTGGCCCTCTCAATGTCAAGTTCCAGAGCTCTAATTACCTGG
ATACGACCTACCTGGATCAAGAAATGAGAATCTCGAGGTACGTGCCTTAC
GATCTTTCCTCTCGCTCTCTTTGACTCTTTTGTTCTTATGCTCTCTCTTT
CTTTTTTCCTCTGGCTCTCGAACTCGTTTCCTGCTTTTGCTCCCGTATGA
TTTTTGCCTCCCTCCCTCTCCAACAGAGGGAAGGGAGGAGAGAGGGGGGG
GGGGGAGGAAATAGAATGATGGTCCCCGTCGACGAAGAAGACTCTTGCTC
GCCTCTCATCCCATACTCGCCCCTTCATCCACCCCCACAGAGGTGGGCGC
GGCAACGTCTTCGTGCTCGTGCGTGACGATCCAGCGACCGCGACGAATCG
ATTATGATCCCATATCGTAATCGGAGCACAAAGTAAAGTAGTTCAGCCAC
AGAAGAAATAAGACGATGGAATGAATTCAGCGGTAATTACCAACCATAAA
GGGATCGAGTCGTCCGTTTGATGGTTGTCGTACCGTTTTGTTAGCTTGAC
TCATGATCTCCTTTCTTTCGTTCTCGACGTCCGAAGCCGTTGGTTTCATT
CCTCAATGTCGCCTCCCTCCCTCGTCTTTCACTGCGCTCTACCCTCGCCA
AGCACTCTTCTCCACCATCCCCTGTCATCTGTTTTGTCATAATCATCGCT
TTAAGCGAGATTGCACACGTACGTGGCCCCTCTCTCACCCCCTTGGTCGT
CTGAGACCACGCAATGCGCTCCTCTCCCTCCATCCCTCCCTCTCTCCCTC
CCTCCCTACAACGACGCCACATATTTTTTGACCGCTTCAATCTGCGCCTC
CACCGATGACTTGGCCGTCCCTCCTGGCGCATTCTTTCTCTCCACACTCC
TCTCGTACGACCATACCTCCTCCGCCACGTCATCGGCAAAGGAGGGATGG
AGGGCCTGTAGATCTGCTGCCGATAGGGAGGAGAGAGCCACCC

Coding sequence (CDS) from alignment at scaffold_6:1086455..1088747+

>mRNA_3730 ID=mRNA_3730|Name=jgi.p|Nanoce1779_2|583211|organism=Nannochloropsis oceanica|type=CDS|length=3405bp|location=Sequence derived from alignment at scaffold_6:1086455..1088747+ (Nannochloropsis oceanica)
ATGGCCATGCCCTGCAGCAGCAGCCGCCGAAAGCCTTTAGTCCTGCTCCT
TTCGGCCTTCCTGGCCCTCTTAATGCCTACCACCCTGGCATTTAACTTCT
TCCCGACGCGCTCCTCGGGCGCAGCTCTCAAGGCCGGTGGCCCCTTGGCC
AAGCTTAAGACAGACCTCCTCTCCAAAGCGGAAGAGGTCAACCGTGGGCT
GGAATCCACGCCCGAGAAGGAAGAAGCCATCCTCAGCCTCATCAAGACCA
TCGAGAAGAAGAACCCCACCAAGACGCCCACCAAATCCCCGCTCATTACC
GCGCGCTGGCGTTTAGTGTACACGACCAGCGAGTCCATCTTAGGGAAGAC
TCGGCCGGCTTTGTTCAGACCAGTAGGCCCCATCTATCAGTACATCGACC
TTGCCAAGGGCACGGCCAGGAACGAAGAGCAAATCCGACCCATTCCCTTC
CTCCCCGCGATCGACGAGGCCATCGACGCCACCATCGAACCGGCCTCCCC
CCAACGGGTCAATGTGTTTTTCCAACGGCTTATGATTGGCCCTCTCAATG
TCAAGTTCCAGAGCTCTAATTACCTGGATACGACCTACCTGGATCAAGAA
ATGAGAATCTCGAGAGGTGGGCGCGGCAACGTCTTCGTGCTCGTGCGTGA
CGATCCAGCGACCGCGACGAATCGATTATGAATGGCCATGCCCTGCAGCA
GCAGCCGCCGAAAGCCTTTAGTCCTGCTCCTTTCGGCCTTCCTGGCCCTC
TTAATGCCTACCACCCTGGCATTTAACTTCTTCCCGACGCGCTCCTCGGG
CGCAGCTCTCAAGGCCGGTGGCCCCTTGGCCAAGCTTAAGACAGACCTCC
TCTCCAAAGCGGAAGAGGTCAACCGTGGGCTGGAATCCACGCCCGAGAAG
GAAGAAGCCATCCTCAGCCTCATCAAGACCATCGAGAAGAAGAACCCCAC
CAAGACGCCCACCAAATCCCCGCTCATTACCGCGCGCTGGCGTTTAGTGT
ACACGACCAGCGAGTCCATCTTAGGGAAGACTCGGCCGGCTTTGTTCAGA
CCAGTAGGCCCCATCTATCAGTACATCGACCTTGCCAAGGGCACGGCCAG
GAACGAAGAGCAAATCCGACCCATTCCCTTCCTCCCCGCGATCGACGAGG
CCATCGACGCCACCATCGAACCGGCCTCCCCCCAACGGGTCAATGTGTTT
TTCCAACGGCTTATGATTGGCCCTCTCAATGTCAAGTTCCAGAGCTCTAA
TTACCTGGATACGACCTACCTGGATCAAGAAATGAGAATCTCGAGAGGTG
GGCGCGGCAACGTCTTCGTGCTCGTGCGTGACGATCCAGCGACCGCGACG
AATCGATTATGAATGGCCATGCCCTGCAGCAGCAGCCGCCGAAAGCCTTT
AGTCCTGCTCCTTTCGGCCTTCCTGGCCCTCTTAATGCCTACCACCCTGG
CATTTAACTTCTTCCCGACGCGCTCCTCGGGCGCAGCTCTCAAGGCCGGT
GGCCCCTTGGCCAAGCTTAAGACAGACCTCCTCTCCAAAGCGGAAGAGGT
CAACCGTGGGCTGGAATCCACGCCCGAGAAGGAAGAAGCCATCCTCAGCC
TCATCAAGACCATCGAGAAGAAGAACCCCACCAAGACGCCCACCAAATCC
CCGCTCATTACCGCGCGCTGGCGTTTAGTGTACACGACCAGCGAGTCCAT
CTTAGGGAAGACTCGGCCGGCTTTGTTCAGACCAGTAGGCCCCATCTATC
AGTACATCGACCTTGCCAAGGGCACGGCCAGGAACGAAGAGCAAATCCGA
CCCATTCCCTTCCTCCCCGCGATCGACGAGGCCATCGACGCCACCATCGA
ACCGGCCTCCCCCCAACGGGTCAATGTGTTTTTCCAACGGCTTATGATTG
GCCCTCTCAATGTCAAGTTCCAGAGCTCTAATTACCTGGATACGACCTAC
CTGGATCAAGAAATGAGAATCTCGAGAGGTGGGCGCGGCAACGTCTTCGT
GCTCGTGCGTGACGATCCAGCGACCGCGACGAATCGATTATGAATGGCCA
TGCCCTGCAGCAGCAGCCGCCGAAAGCCTTTAGTCCTGCTCCTTTCGGCC
TTCCTGGCCCTCTTAATGCCTACCACCCTGGCATTTAACTTCTTCCCGAC
GCGCTCCTCGGGCGCAGCTCTCAAGGCCGGTGGCCCCTTGGCCAAGCTTA
AGACAGACCTCCTCTCCAAAGCGGAAGAGGTCAACCGTGGGCTGGAATCC
ACGCCCGAGAAGGAAGAAGCCATCCTCAGCCTCATCAAGACCATCGAGAA
GAAGAACCCCACCAAGACGCCCACCAAATCCCCGCTCATTACCGCGCGCT
GGCGTTTAGTGTACACGACCAGCGAGTCCATCTTAGGGAAGACTCGGCCG
GCTTTGTTCAGACCAGTAGGCCCCATCTATCAGTACATCGACCTTGCCAA
GGGCACGGCCAGGAACGAAGAGCAAATCCGACCCATTCCCTTCCTCCCCG
CGATCGACGAGGCCATCGACGCCACCATCGAACCGGCCTCCCCCCAACGG
GTCAATGTGTTTTTCCAACGGCTTATGATTGGCCCTCTCAATGTCAAGTT
CCAGAGCTCTAATTACCTGGATACGACCTACCTGGATCAAGAAATGAGAA
TCTCGAGAGGTGGGCGCGGCAACGTCTTCGTGCTCGTGCGTGACGATCCA
GCGACCGCGACGAATCGATTATGAATGGCCATGCCCTGCAGCAGCAGCCG
CCGAAAGCCTTTAGTCCTGCTCCTTTCGGCCTTCCTGGCCCTCTTAATGC
CTACCACCCTGGCATTTAACTTCTTCCCGACGCGCTCCTCGGGCGCAGCT
CTCAAGGCCGGTGGCCCCTTGGCCAAGCTTAAGACAGACCTCCTCTCCAA
AGCGGAAGAGGTCAACCGTGGGCTGGAATCCACGCCCGAGAAGGAAGAAG
CCATCCTCAGCCTCATCAAGACCATCGAGAAGAAGAACCCCACCAAGACG
CCCACCAAATCCCCGCTCATTACCGCGCGCTGGCGTTTAGTGTACACGAC
CAGCGAGTCCATCTTAGGGAAGACTCGGCCGGCTTTGTTCAGACCAGTAG
GCCCCATCTATCAGTACATCGACCTTGCCAAGGGCACGGCCAGGAACGAA
GAGCAAATCCGACCCATTCCCTTCCTCCCCGCGATCGACGAGGCCATCGA
CGCCACCATCGAACCGGCCTCCCCCCAACGGGTCAATGTGTTTTTCCAAC
GGCTTATGATTGGCCCTCTCAATGTCAAGTTCCAGAGCTCTAATTACCTG
GATACGACCTACCTGGATCAAGAAATGAGAATCTCGAGAGGTGGGCGCGG
CAACGTCTTCGTGCTCGTGCGTGACGATCCAGCGACCGCGACGAATCGAT
TATGA

Synonyms

Publications