jgi.p|Nanoce1779_2|577139, mRNA_373 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577139
Unique Name	mRNA_373
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	993
Alignment location	scaffold_3:925777..926862 -

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Properties


Property Name	Value
TranscriptId	577225
Track	FilteredModels2
ProteinId	577139

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:925777..926862 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577139	gene_373	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577139	mRNA_373-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_373	CDS_373	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:925777..926862-
coding sequence from alignment at scaffold_3:925777..926862-

mRNA sequence

>mRNA_373 ID=mRNA_373|Name=jgi.p|Nanoce1779_2|577139|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
CTCCCTTCTTCCTATGTTGCTGCCAGGACGACCCAAGAACTTCCCGTTCC
CGTTTCTGCCTCCTTCTCCCTGACGTGCAAGACACCGCTTCCACACCACC
AGTGGCAGCACCAGCCGTACTTGGAGCAGCAGCAGTCGCTGTAGCCTCTC
GCCGCTGTTGATGCACATGAGGGTCCTTTTCTGTCACTACTACCACTGTT
CCTTTCGCTGCTGCTGCGGCTGCTACTGCGGCAGGTATAGTCACAGAAGG
CAATTTCTGCTGCTGATGCTCCTCCTCTTCCCCCTCCTTTTTTCGACCCC
GTCCCGACGACAGCCCCTTGCGCGCCTCTGTAGCCTGTTTTTTGCCCTTG
CTCACACTCCTGCTAGTTTGATATTCACCTTTCTTCTCCTTTATCTGCCT
CCCCTCCTCCAAATCCCTCTCCATCGAGTCAGCCCCTACCTCCTCCTCCT
CCTCTTCCTCACCCTCCTCAGATCCCTTCCGCTTCTTCTCACTCCTATAT
TCCCTCTCTTTCCCTGGCCCTTCTCTTTTTTCCTTTCCTTTCTGATCAGT
CGTCTGCATGGCAAGGATGTATTCAATCGCACATGCCACATTGTTAGGAC
ACGCGCGTAGCGCTGCTTCTATCAGAGCATCCGGAAACATCATCTTCTCC
AACTGCCGATAGCTTTCGGACTTGCGCATTTTATGTCCACGCTCACTTTT
CCGGCTCGGCTCGAGGCTCTCCCGCCTTGGCCGCTTAGAGCCTCCATCCT
GCGTCTGCGTCTGCGTCTGTGAGGTCATCCGCTGCTTGGTCTCATTGCTA
TCGGCGGGTATTGGACGCTCCTCCCCCGAGCCTGCGGCCATCGTGCTGGA
AGTAGTGAGGTGGCGAGGCGGGGAGGAGTTACGGCGACTGCTTGAAGCAT
GCCTAGCGAGGACGGTAGGCCCCGCCGCGTTCGTGCTGCTCTTGCGGCGA
GGACGACCCACCATCATAGGTACCAGTGCAACCGTGTGCGACT

protein sequence of jgi.p|Nanoce1779_2|577139

>mRNA_373-protein ID=mRNA_373-protein|Name=jgi.p|Nanoce1779_2|577139|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MHMRVLFCHYYHCSFRCCCGCYCGRYSHRRQFLLLMLLLFPLLFSTPSRR
QPLARLCSLFFALAHTPASLIFTFLLLYLPPLLQIPLHRVSPYLLLLLFL
TLLRSLPLLLTPIFPLFPWPFSFFLSFLISRLHGKDVFNRTCHIVRTRA*

mRNA from alignment at scaffold_3:925777..926862-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_373 ID=mRNA_373|Name=jgi.p|Nanoce1779_2|577139|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp|location=Sequence derived from alignment at scaffold_3:925777..926862- (Nannochloropsis oceanica)
CTCCCTTCTTCCTATGTTGCTGCCAGGACGACCCAAGAACTTCCCGTTCC
CGTTTCTGCCTCCTTCTCCCTGACGTGCAAGACACCGCTTCCACACCACC
AGTGGCAGCACCAGCCGTACTTGGAGCAGCAGCAGTCGCTGTAGCCTCTC
GCCGCTGTTGATGCACATGAGGGTCCTTTTCTGTCACTACTACCACTGTT
CCTTTCGCTGCTGCTGCGGCTGCTACTGCGGCAGGTATAGTCACAGAAGG
CAATTTCTGCTGCTGATGCTCCTCCTCTTCCCCCTCCTTTTTTCGACCCC
GTCCCGACGACAGCCCCTTGCGCGCCTCTGTAGCCTGTTTTTTGCCCTTG
CTCACACTCCTGCTAGTTTGATATTCACCTTTCTTCTCCTTTATCTGCCT
CCCCTCCTCCAAATCCCTCTCCATCGAGTCAGCCCCTACCTCCTCCTCCT
CCTCTTCCTCACCCTCCTCAGATCCCTTCCGCTTCTTCTCACTCCTATAT
TCCCTCTCTTTCCCTGGCCCTTCTCTTTTTTCCTTTCCTTTCTGATCAGT
CGTCTGCATGGCAAGGATGTATTCAATCGCACATGCCACATTGTTAGGAC
ACGCGCGTAGCGCTGCTTCTATCAGAGCATCCGGAAACATCATCTTCTCC
AACTGCCGATAGCTTTCGGACTTGCGCATTTTATGTCCACGCTCACTTTT
CCGGCTCTTTATCGACGGGGGTTCAGGGTGTTGGGGAGGGAAGGAGAGGG
TGAGAATGGAAGAGTGGAGGAGAGAGGGAGGGATGCTGTACACACGTACC
GGCTCGAGGCTCTCCCGCCTTGGCCGCTTAGAGCCTCCATCCTGCGTCTG
CGTCTGCGTCTGTGAGGTCATCCGCTGCTTGGTCTCATTGCTATCGGCGG
GTATTGGACGCTCCTCCCCCGAGCCTGCGGCCATCGTGCTGGAAGTAGTG
AGGTGGCGAGGCGGGGAGGAGTTACGGCGACTGCTTGAAGCATGCCTAGC
GAGGACGGTAGGCCCCGCCGCGTTCGTGCTGCTCTTGCGGCGAGGACGAC
CCACCATCATAGGTACCAGTGCAACCGTGTGCGACT

Coding sequence (CDS) from alignment at scaffold_3:925777..926862-

>mRNA_373 ID=mRNA_373|Name=jgi.p|Nanoce1779_2|577139|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_3:925777..926862- (Nannochloropsis oceanica)
ATGCACATGAGGGTCCTTTTCTGTCACTACTACCACTGTTCCTTTCGCTG
CTGCTGCGGCTGCTACTGCGGCAGGTATAGTCACAGAAGGCAATTTCTGC
TGCTGATGCTCCTCCTCTTCCCCCTCCTTTTTTCGACCCCGTCCCGACGA
CAGCCCCTTGCGCGCCTCTGTAGCCTGTTTTTTGCCCTTGCTCACACTCC
TGCTAGTTTGATATTCACCTTTCTTCTCCTTTATCTGCCTCCCCTCCTCC
AAATCCCTCTCCATCGAGTCAGCCCCTACCTCCTCCTCCTCCTCTTCCTC
ACCCTCCTCAGATCCCTTCCGCTTCTTCTCACTCCTATATTCCCTCTCTT
TCCCTGGCCCTTCTCTTTTTTCCTTTCCTTTCTGATCAGTCGTCTGCATG
GCAAGGATGTATTCAATCGCACATGCCACATTGTTAGGACACGCGCGTAG

Synonyms

Publications