Properties
| Property Name | Value |
|---|
| TranscriptId | 583287 |
| Track | FilteredModels2 |
| ProteinId | 583201 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:1079451..1080544 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3727 ID=mRNA_3727|Name=jgi.p|Nanoce1779_2|583201|organism=Nannochloropsis oceanica|type=mRNA|length=597bp
ACAGATCGGTAGGGGACGCAAAGAGTAGCGGGGACTGGTTGCGCCGCAAA
AGAGGAAGGGGACAGAGACAGGAAAGGAAGAGCAAAGCAAGTACTCTTTG
AGACGAGGCGCGCACTCAAGCGGCTAGATTACTTGTCCAAGGATCCACAC
CACTACCACAAAGATGCCGTTTCGCGTCAACTTTCCCTCCTTCTTCATGG
CCCTTATCCGAGCTCCCACTCAAGCTCAGCCGTACCAAGCCGTCTTCCGC
GTGTCCCCAGCCATGAACAAATTAGAGATCCGGGAATACTTGACAAAAAT
TTATGGGTTGTCAGTGCGCAAGGTCATGACGGCAAATATGGCAGGGAGAA
GAAAAAGGATTTTTGGTGCCAGGAGACTTCTGCGATACAAGCGACCCGAT
TTTAAGAAGGCATATGTGACCCTTGGAGAGGAGGTGGAAGCGGGACAAGG
AGGAGGGGCGGTATGAGGGAAGGAAGGAGGGAGGGAAAAGAGGATAAGAC
AAACGGAAAGAATGAAGAGGAAAAACGCATGTACGCAATGTTTTTTTTTT
CTGAATGCGAGGATACACATACATACATACATACATACATACATACA back to topprotein sequence of jgi.p|Nanoce1779_2|583201 >mRNA_3727-protein ID=mRNA_3727-protein|Name=jgi.p|Nanoce1779_2|583201|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MPFRVNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLS
VRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEAGQGGGAV
* back to topmRNA from alignment at scaffold_6:1079451..1080544- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3727 ID=mRNA_3727|Name=jgi.p|Nanoce1779_2|583201|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp|location=Sequence derived from alignment at scaffold_6:1079451..1080544- (Nannochloropsis oceanica)
ACAGATCGGTAGGGGACGCAAAGAGTAGCGGGGACTGGTTGCGCCGCAAA
AGAGGAAGGGGACAGAGACAGGAAAGGAAGAGCAAAGCAAGTACTCTTTG
AGACGAGGCGCGCACTCAAGCGGCTAGATTACTTGTCCAAGGATCCACAC
CACTACCACAAAGGTATGTAGTCGACCACCAATACCGTCAAAATAATCGG
ATGGGGTTGCTTGTGTAAGGCGGCAAGGACGGAGCTCGTGGGACTGCCGC
AGCATTAGGGTAATGATGCAAGACACATGGAGAGCCAAGATAGCGTCGTG
AACATCACCAACAGACCCTCTCTCCCTGCAACCGCCTTCACGGCAACATA
TGCAAATGGGTAGCCGTGTTGAATCGCAGACATTTATGACCGGCCACTCA
TTTCCTCCTTCCCCTTAATTCTTTTATCAGATGCCGTTTCGCGTCAACTT
TCCCTCCTTCTTCATGGCCCTTATCCGAGCTCCCACTCAAGCTCAGCCGT
ACCAAGCCGTCTTCCGCGTGTCCCCAGCCATGAACAAATTAGAGATCCGG
GAATACTTGACAAAAATTTATGGGTTGTCAGTGCGCAAGGTCATGACGGC
AAATATGGCAGGGAGAAGAAAAAGGTGCGTTTGTGTGTGTGTGCTGCCAT
GAGGCCATGAGGTACAACGTCTCTCATTCCTTTCATCCAACGCGGTGCAG
AAGTCTCTCTGGCTCGCATGCTACCCTTTCCCATACTCCTTCTTCCTCCA
TCCTGTGACCCTCCGAACCCCATTTACTCCACCCATCGGCTCTCTCTCTT
CCTCCCTCTCTCTCTCCCTCCCTTCCTCCTCCTCCTTTTCCTCCTCCTCT
CCAGGATTTTTGGTGCCAGGAGACTTCTGCGATACAAGCGACCCGATTTT
AAGAAGGCATATGTGACCCTTGGAGAGGAGGTGGAAGCGGGACAAGGAGG
AGGGGCGGTATGAGGGAAGGAAGGAGGGAGGGAAAAGAGGATAAGACAAA
CGGAAAGAATGAAGAGGAAAAACGCATGTACGCAATGTTTTTTTTTTCTG
AATGCGAGGATACACATACATACATACATACATACATACATACA back to topCoding sequence (CDS) from alignment at scaffold_6:1079451..1080544- >mRNA_3727 ID=mRNA_3727|Name=jgi.p|Nanoce1779_2|583201|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_6:1079451..1080544- (Nannochloropsis oceanica)
GATTTTTGGTGCCAGGAGACTTCTGCGATACAAGCGACCCGATTTTAAGA
AGGCATATGTGACCCTTGGAGAGGAGGTGGAAGCGGGACAAGGAGGAGGG
GCGGTATGAATGCCGTTTCGCGTCAACTTTCCCTCCTTCTTCATGGCCCT
TATCCGAGCTCCCACTCAAGCTCAGCCGTACCAAGCCGTCTTCCGCGTGT
CCCCAGCCATGAACAAATTAGAGATCCGGGAATACTTGACAAAAATTTAT
GGGTTGTCAGTGCGCAAGGTCATGACGGCAAATATGGCAGGGAGAAGAAA
AAGGATTTTTGGTGCCAGGAGACTTCTGCGATACAAGCGACCCGATTTTA
AGAAGGCATATGTGACCCTTGGAGAGGAGGTGGAAGCGGGACAAGGAGGA
GGGGCGGTATGAATGCCGTTTCGCGTCAACTTTCCCTCCTTCTTCATGGC
CCTTATCCGAGCTCCCACTCAAGCTCAGCCGTACCAAGCCGTCTTCCGCG
TGTCCCCAGCCATGAACAAATTAGAGATCCGGGAATACTTGACAAAAATT
TATGGGTTGTCAGTGCGCAAGGTCATGACGGCAAATATGGCAGGGAGAAG
AAAAAG back to top
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