jgi.p|Nanoce1779_2|553192, mRNA_3726 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553192
Unique Name	mRNA_3726
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1983
Alignment location	scaffold_6:1075985..1077967 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553278
Track	FilteredModels2
ProteinId	553192

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1075985..1077967 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553192	gene_3726	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553192	mRNA_3726-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3726	CDS_3726	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1075985..1077967+
coding sequence from alignment at scaffold_6:1075985..1077967+

mRNA sequence

>mRNA_3726 ID=mRNA_3726|Name=jgi.p|Nanoce1779_2|553192|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp
ACACATGAAATTACCTTCTTTGTTTCTTTTTTCACTATTTTTCATTATAT
TAACGAACCACTCAACTTATGAACAATCGCGAATACAATTTCTCGTGCGC
ACCCTGCAAGATATCCAGCAAAGGATTATCTTGTCGTGGTTCCCGTCTTT
CCTCTCTTCTTGCTCCCTCCTCCAGGCACCGCGTCACAATGGCCTCGGCG
TCCTGGTACATTAACATTTGCAACCGCACTGCCTGCAAAGGTCCGACAAG
CCCAAGCCTCGTCGCTGCGGCCATCAAATCACGCAGCACCAAGTAACAAA
ACATGCGGGACGTTGTGATTACGTCCACCCCCAAGGCTCGACAAAGCCAG
CCAAAGAGAGGGGCCTGGTGACCCTTAACGGGGAGAAGTTGTGGTGGTAC
TGCTCCATTTCTTCCTTCGCTTCCCCCCGCTGCTTTTGCTGGTGGTCGTC
CTCGCACTTGGTCCCTTGCATGACAAAGCCATCGTCGATTTTGGGGAGAA
ATAGTGGGGAAATTATCGCAGGCTAGACGAAGCAATGCTTGGCCCTGCGA
GACTGAAGCACGACGCCCACCCTCGGTGGTTAGCAGGGCGTGGCACTGAC
GGTCTAGACTTGCCCATGCCATGACAAGAGGTTGTGCTGATGGAGGAGAA
GATCCAGGTCTGCCTGGTACTTCCATGGCTTCAGCGGCGGCGTACGCCGC
CCGAACCAAGGGCAAGAGGAGCATGGCCTGTTGCTGCACGGTCTGGCGGG
CAAAGACAAGCAACCCCGCAACGCGGGCCTCCTTGTCCCCGCTCGCGCCC
CCCTTGAGTTCGAACTGCCCCATCTGCATCGCGGCCTCGAGGCCGTAGGA
ATGTGCAAAGCCGCCGGTGGGCAAGTTAGAATCCATCATTTGCCAGACGC
ACCAGGCCAGGGCGGGCGAGGGAGGGGAGGAGGAAACTTGGTTTAGGGAG
GCCGGCGGCAGCGGCAGGACTTCGTCCATGGAGGACAACTAACGCCTGCA
ACAACCACGGCGCTACCCCTTGCGCCAGAGTGAGGTAGTGCCTGTGAATG
AGTGTCGTACATGTAGGGTGTGTGTGGGATATGGGTTGAGTCTAATGCGC
CGCAGTGCCAAGCCACACGCAGCGAGAGAGAAGTCAACCTTGTTCCGTGT
CGTTCTTCACTACCGTAGTGACTACTACTCGCTCGGGGGTCCCTTTTACC
AAGCCCAAACTCTTAACAAACTACATTCATTCCCTCCCCAAAACAGCTTT
GAGGACAGCTAGTATCATCTGGATCGCCTGGTCGGGCCGCTTACTTCCCG
GTTCCTGTTAGAATCCGCCTTGTAACGCGCCATCCTTTCCGGCCATCCTC
CCCATCATCACCCTATTGCTCCCCCAGCCCCTCCTTCTTTAGCAGAATCA
TAACATCTCTATTACGCAGCTGTCATGAACCAAAACGATGATAAGGAACT
GCTGGACCTCAAAACTCTCCTAGACAACATGTGCGCCGCTCCCCTGCCCA
TCACAAAGGAGCAAATCTCAGGCGTGGCCGAATGCGCCATGCGACACGTC
CAGAAGTACAAGAAAGTGGTGCATCTCATCGAGCGATATGCCAAGCACTA
CGCGGGTGCGCGGTACCGTTCTGCTATTATCTGTGTGATTGATTCCCTGT
GCACCAAAGCCCATCGCGCCCACAAGGAGAAGGACGTTTTCATCCCTCGT
TTTCGTCTCCGGCTTCTAGATACGGTGCAGGGCCTAACGGCGTTGGAAGG
GCGGTCAGAAAAGAAATTGATGGATCGGATCTTTCTAGAGTGGCGGAAAC
GTGGTTGGTTTGACGTTCCAAGTTTGGCTGTCCTGGCCGAGGGTGGAGGA
GGGGGAAAGTCCCGCGGCGCCAGCAGTGCCACCAGCGGCAGCTCCAGCAG
CCCTAGCAGGCATAGCAACCCCTCCGATGCAAACTCCTCGGGCTTCACGC
CACCGTTGCCTCCCCCTCCACCACCTCCTCCTC

protein sequence of jgi.p|Nanoce1779_2|553192

>mRNA_3726-protein ID=mRNA_3726-protein|Name=jgi.p|Nanoce1779_2|553192|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MNQNDDKELLDLKTLLDNMCAAPLPITKEQISGVAECAMRHVQKYKKVVH
LIERYAKHYAGARYRSAIICVIDSLCTKAHRAHKEKDVFIPRFRLRLLDT
VQGLTALEGRSEKKLMDRIFLEWRKRGWFDVPSLAVLAEGGGGGKSRGAS
SATSGSSSSPSRHSNPSDANSSGFTPPLPPPPPPPP

mRNA from alignment at scaffold_6:1075985..1077967+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3726 ID=mRNA_3726|Name=jgi.p|Nanoce1779_2|553192|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at scaffold_6:1075985..1077967+ (Nannochloropsis oceanica)
ACACATGAAATTACCTTCTTTGTTTCTTTTTTCACTATTTTTCATTATAT
TAACGAACCACTCAACTTATGAACAATCGCGAATACAATTTCTCGTGCGC
ACCCTGCAAGATATCCAGCAAAGGATTATCTTGTCGTGGTTCCCGTCTTT
CCTCTCTTCTTGCTCCCTCCTCCAGGCACCGCGTCACAATGGCCTCGGCG
TCCTGGTACATTAACATTTGCAACCGCACTGCCTGCAAAGGTCCGACAAG
CCCAAGCCTCGTCGCTGCGGCCATCAAATCACGCAGCACCAAGTAACAAA
ACATGCGGGACGTTGTGATTACGTCCACCCCCAAGGCTCGACAAAGCCAG
CCAAAGAGAGGGGCCTGGTGACCCTTAACGGGGAGAAGTTGTGGTGGTAC
TGCTCCATTTCTTCCTTCGCTTCCCCCCGCTGCTTTTGCTGGTGGTCGTC
CTCGCACTTGGTCCCTTGCATGACAAAGCCATCGTCGATTTTGGGGAGAA
ATAGTGGGGAAATTATCGCAGGCTAGACGAAGCAATGCTTGGCCCTGCGA
GACTGAAGCACGACGCCCACCCTCGGTGGTTAGCAGGGCGTGGCACTGAC
GGTCTAGACTTGCCCATGCCATGACAAGAGGTTGTGCTGATGGAGGAGAA
GATCCAGGTCTGCCTGGTACTTCCATGGCTTCAGCGGCGGCGTACGCCGC
CCGAACCAAGGGCAAGAGGAGCATGGCCTGTTGCTGCACGGTCTGGCGGG
CAAAGACAAGCAACCCCGCAACGCGGGCCTCCTTGTCCCCGCTCGCGCCC
CCCTTGAGTTCGAACTGCCCCATCTGCATCGCGGCCTCGAGGCCGTAGGA
ATGTGCAAAGCCGCCGGTGGGCAAGTTAGAATCCATCATTTGCCAGACGC
ACCAGGCCAGGGCGGGCGAGGGAGGGGAGGAGGAAACTTGGTTTAGGGAG
GCCGGCGGCAGCGGCAGGACTTCGTCCATGGAGGACAACTAACGCCTGCA
ACAACCACGGCGCTACCCCTTGCGCCAGAGTGAGGTAGTGCCTGTGAATG
AGTGTCGTACATGTAGGGTGTGTGTGGGATATGGGTTGAGTCTAATGCGC
CGCAGTGCCAAGCCACACGCAGCGAGAGAGAAGTCAACCTTGTTCCGTGT
CGTTCTTCACTACCGTAGTGACTACTACTCGCTCGGGGGTCCCTTTTACC
AAGCCCAAACTCTTAACAAACTACATTCATTCCCTCCCCAAAACAGCTTT
GAGGACAGCTAGTATCATCTGGATCGCCTGGTCGGGCCGCTTACTTCCCG
GTTCCTGTTAGAATCCGCCTTGTAACGCGCCATCCTTTCCGGCCATCCTC
CCCATCATCACCCTATTGCTCCCCCAGCCCCTCCTTCTTTAGCAGAATCA
TAACATCTCTATTACGCAGCTGTCATGAACCAAAACGATGATAAGGAACT
GCTGGACCTCAAAACTCTCCTAGACAACATGTGCGCCGCTCCCCTGCCCA
TCACAAAGGAGCAAATCTCAGGCGTGGCCGAATGCGCCATGCGACACGTC
CAGAAGTACAAGAAAGTGGTGCATCTCATCGAGCGATATGCCAAGCACTA
CGCGGGTGCGCGGTACCGTTCTGCTATTATCTGTGTGATTGATTCCCTGT
GCACCAAAGCCCATCGCGCCCACAAGGAGAAGGACGTTTTCATCCCTCGT
TTTCGTCTCCGGCTTCTAGATACGGTGCAGGGCCTAACGGCGTTGGAAGG
GCGGTCAGAAAAGAAATTGATGGATCGGATCTTTCTAGAGTGGCGGAAAC
GTGGTTGGTTTGACGTTCCAAGTTTGGCTGTCCTGGCCGAGGGTGGAGGA
GGGGGAAAGTCCCGCGGCGCCAGCAGTGCCACCAGCGGCAGCTCCAGCAG
CCCTAGCAGGCATAGCAACCCCTCCGATGCAAACTCCTCGGGCTTCACGC
CACCGTTGCCTCCCCCTCCACCACCTCCTCCTC

Coding sequence (CDS) from alignment at scaffold_6:1075985..1077967+

>mRNA_3726 ID=mRNA_3726|Name=jgi.p|Nanoce1779_2|553192|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_6:1075985..1077967+ (Nannochloropsis oceanica)
ATGAACCAAAACGATGATAAGGAACTGCTGGACCTCAAAACTCTCCTAGA
CAACATGTGCGCCGCTCCCCTGCCCATCACAAAGGAGCAAATCTCAGGCG
TGGCCGAATGCGCCATGCGACACGTCCAGAAGTACAAGAAAGTGGTGCAT
CTCATCGAGCGATATGCCAAGCACTACGCGGGTGCGCGGTACCGTTCTGC
TATTATCTGTGTGATTGATTCCCTGTGCACCAAAGCCCATCGCGCCCACA
AGGAGAAGGACGTTTTCATCCCTCGTTTTCGTCTCCGGCTTCTAGATACG
GTGCAGGGCCTAACGGCGTTGGAAGGGCGGTCAGAAAAGAAATTGATGGA
TCGGATCTTTCTAGAGTGGCGGAAACGTGGTTGGTTTGACGTTCCAAGTT
TGGCTGTCCTGGCCGAGGGTGGAGGAGGGGGAAAGTCCCGCGGCGCCAGC
AGTGCCACCAGCGGCAGCTCCAGCAGCCCTAGCAGGCATAGCAACCCCTC
CGATGCAAACTCCTCGGGCTTCACGCCACCGTTGCCTCCCCCTCCACCAC
CTCCTCCT

Synonyms

Publications