jgi.p|Nanoce1779_2|539668, mRNA_3725 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|539668
Unique NamemRNA_3725
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length847
Alignment locationscaffold_6:1075985..1076903 -

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Properties
Property NameValue
TranscriptId539754
TrackFilteredModels2
ProteinId539668
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1075985..1076903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539668gene_3725Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539668mRNA_3725-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3725CDS_3725Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3725 ID=mRNA_3725|Name=jgi.p|Nanoce1779_2|539668|organism=Nannochloropsis oceanica|type=mRNA|length=847bp
TCGCCCGCCCTGGCCTGGTGCGTCTGGCAAATGATGGATTCTAACTTGCC
CACCGGCGGCTTTGCACATTCCTACGGCCTCGAGGCCGCGATGCAGATGG
GGCAGTTCGAACTCAAGGGGGGCGCGAGCGGGGACAAGGAGGCCCGCGTT
GCGGGGTTGCTTGTCTTTGCCCGCCAGACCGTGCAGCAACAGGCCATGCT
CCTCTTGCCCTTGGTTCGGGCGGCGTACGCCGCCGCTGAAGCCATGGAAG
TACCAGGCAGACCTGGATCTTCTCCTCCATCAGCACAACCTCTTGTCATG
GCATGGGCAAGTCTAGACCGTCAGTGCCACGCCCTGCTAACCACCGAGGG
TGGGCGTCGTGCTTCAGTCTCGCAGGGCCAAGCATTGCTTCGTCTAGCCT
GCGATAATTTCCCCACTATTTCTCCCCAAAATCGACGATGGCTTTCAGTA
CCACCACAACTTCTCCCCGTTAAGGGTCACCAGGCCCCTCTCTTTGGCTG
GCTTTGTCGAGCCTTGGGGGTGGACGTAATCACAACGTCCCGCATGTTTT
GTTACTTGGTGCTGCGTGATTTGATGGCCGCAGCGACGAGGCTTGGGCTT
GTCGGACCTTTGCAGGCAGTGCGGTTGCAAATGTTAATGTACCAGGACGC
CGAGGCCATTGTGACGCGGTGCCTGGAGGAGGGAGCAAGAAGAGAGGAAA
GACGGGAACCACGACAAGATAATCCTTTGCTGGATATCTTGCAGGGTGCG
CACGAGAAATTGTATTCGCGATTGTTCATAAGTTGAGTGGTTCGTTAATA
TAATGAAAAATAGTGAAAAAAGAAACAAAGAAGGTAATTTCATGTGT
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protein sequence of jgi.p|Nanoce1779_2|539668

>mRNA_3725-protein ID=mRNA_3725-protein|Name=jgi.p|Nanoce1779_2|539668|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MMDSNLPTGGFAHSYGLEAAMQMGQFELKGGASGDKEARVAGLLVFARQT
VQQQAMLLLPLVRAAYAAAEAMEVPGRPGSSPPSAQPLVMAWASLDRQCH
ALLTTEGGRRASVSQGQALLRLACDNFPTISPQNRRWLSVPPQLLPVKGH
QAPLFGWLCRALGVDVITTSRMFCYLVLRDLMAAATRLGLVGPLQAVRLQ
MLMYQDAEAIVTRCLEEGARREERREPRQDNPLLDILQGAHEKLYSRLFI
S*
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mRNA from alignment at scaffold_6:1075985..1076903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3725 ID=mRNA_3725|Name=jgi.p|Nanoce1779_2|539668|organism=Nannochloropsis oceanica|type=mRNA|length=919bp|location=Sequence derived from alignment at scaffold_6:1075985..1076903- (Nannochloropsis oceanica)
TCGCCCGCCCTGGCCTGGTGCGTCTGGCAAATGATGGATTCTAACTTGCC
CACCGGCGGCTTTGCACATTCCTACGGCCTCGAGGCCGCGATGCAGATGG
GGCAGTTCGAACTCAAGGGGGGCGCGAGCGGGGACAAGGAGGCCCGCGTT
GCGGGGTTGCTTGTCTTTGCCCGCCAGACCGTGCAGCAACAGGCCATGCT
CCTCTTGCCCTTGGTTCGGGCGGCGTACGCCGCCGCTGAAGCCATGGAAG
TACCAGGCAGACCTGGATCTTCTCCTCCATCAGCACAACCTCTTGTCATG
GCATGGGCAAGTCTAGACCGTCAGTGCCACGCCCTGCTAACCACCGAGGG
TGGGCGTCGTGCTTCAGTCTCGCAGGGCCAAGCATTGCTTCGTCTAGCCT
GCGATAATTTCCCCACTATTTCTCCCCAAAATCGACGATGGCTTTGTCAT
GCAAGGGACCAAGTGCGAGGACGACCACCAGCAAAAGCAGCGGGGGGAAG
CGAAGGAAGAAATGGAGCAGTACCACCACAACTTCTCCCCGTTAAGGGTC
ACCAGGCCCCTCTCTTTGGCTGGCTTTGTCGAGCCTTGGGGGTGGACGTA
ATCACAACGTCCCGCATGTTTTGTTACTTGGTGCTGCGTGATTTGATGGC
CGCAGCGACGAGGCTTGGGCTTGTCGGACCTTTGCAGGCAGTGCGGTTGC
AAATGTTAATGTACCAGGACGCCGAGGCCATTGTGACGCGGTGCCTGGAG
GAGGGAGCAAGAAGAGAGGAAAGACGGGAACCACGACAAGATAATCCTTT
GCTGGATATCTTGCAGGGTGCGCACGAGAAATTGTATTCGCGATTGTTCA
TAAGTTGAGTGGTTCGTTAATATAATGAAAAATAGTGAAAAAAGAAACAA
AGAAGGTAATTTCATGTGT
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Coding sequence (CDS) from alignment at scaffold_6:1075985..1076903-

>mRNA_3725 ID=mRNA_3725|Name=jgi.p|Nanoce1779_2|539668|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_6:1075985..1076903- (Nannochloropsis oceanica)
CAGTACCACCACAACTTCTCCCCGTTAAGGGTCACCAGGCCCCTCTCTTT
GGCTGGCTTTGTCGAGCCTTGGGGGTGGACGTAATCACAACGTCCCGCAT
GTTTTGTTACTTGGTGCTGCGTGATTTGATGGCCGCAGCGACGAGGCTTG
GGCTTGTCGGACCTTTGCAGGCAGTGCGGTTGCAAATGTTAATGTACCAG
GACGCCGAGGCCATTGTGACGCGGTGCCTGGAGGAGGGAGCAAGAAGAGA
GGAAAGACGGGAACCACGACAAGATAATCCTTTGCTGGATATCTTGCAGG
GTGCGCACGAGAAATTGTATTCGCGATTGTTCATAAGTTGAATGATGGAT
TCTAACTTGCCCACCGGCGGCTTTGCACATTCCTACGGCCTCGAGGCCGC
GATGCAGATGGGGCAGTTCGAACTCAAGGGGGGCGCGAGCGGGGACAAGG
AGGCCCGCGTTGCGGGGTTGCTTGTCTTTGCCCGCCAGACCGTGCAGCAA
CAGGCCATGCTCCTCTTGCCCTTGGTTCGGGCGGCGTACGCCGCCGCTGA
AGCCATGGAAGTACCAGGCAGACCTGGATCTTCTCCTCCATCAGCACAAC
CTCTTGTCATGGCATGGGCAAGTCTAGACCGTCAGTGCCACGCCCTGCTA
ACCACCGAGGGTGGGCGTCGTGCTTCAGTCTCGCAGGGCCAAGCATTGCT
TCGTCTAGCCTGCGATAATTTCCCCACTATTTCTCCCCAAAATCGACGAT
GGCTTTCAGTACCACCACAACTTCTCCCCGTTAAGGGTCACCAGGCCCCT
CTCTTTGGCTGGCTTTGTCGAGCCTTGGGGGTGGACGTAATCACAACGTC
CCGCATGTTTTGTTACTTGGTGCTGCGTGATTTGATGGCCGCAGCGACGA
GGCTTGGGCTTGTCGGACCTTTGCAGGCAGTGCGGTTGCAAATGTTAATG
TACCAGGACGCCGAGGCCATTGTGACGCGGTGCCTGGAGGAGGGAGCAAG
AAGAGAGGAAAGACGGGAACCACGACAAGATAATCCTTTGCTGGATATCT
TGCAGGGTGCGCACGAGAAATTGTATTCGCGATTGTTCATAAGTTGAATG
ATGGATTCTAACTTGCCCACCGGCGGCTTTGCACATTCCTACGGCCTCGA
GGCCGCGATGCAGATGGGGCAGTTCGAACTCAAGGGGGGCGCGAGCGGGG
ACAAGGAGGCCCGCGTTGCGGGGTTGCTTGTCTTTGCCCGCCAGACCGTG
CAGCAACAGGCCATGCTCCTCTTGCCCTTGGTTCGGGCGGCGTACGCCGC
CGCTGAAGCCATGGAAGTACCAGGCAGACCTGGATCTTCTCCTCCATCAG
CACAACCTCTTGTCATGGCATGGGCAAGTCTAGACCGTCAGTGCCACGCC
CTGCTAACCACCGAGGGTGGGCGTCGTGCTTCAGTCTCGCAGGGCCAAGC
ATTGCTTCGTCTAGCCTGCGATAATTTCCCCACTATTTCTCCCCAAAATC
GACGATGGCTTT
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Synonyms
Publications