jgi.p|Nanoce1779_2|583193, mRNA_3724 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583193
Unique NamemRNA_3724
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1276
Alignment locationscaffold_6:1074708..1075983 +

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Properties
Property NameValue
TranscriptId583279
TrackFilteredModels2
ProteinId583193
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1074708..1075983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583193gene_3724Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583193mRNA_3724-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3724CDS_3724Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3724 ID=mRNA_3724|Name=jgi.p|Nanoce1779_2|583193|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp
AGGACAGTAATCACCTTTTCTCTCTCTTCCATACCTGTAATGAAGTTCTT
CTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGATCCTAGTCGTAA
GCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCACAACCAAGGAG
GGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATGAAAGCTCCATC
ATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGCGACAAGCTCGC
CCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTGCTGCCGCACCC
GCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAGAAGGACGAGAA
TGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGGGGCCACCCGAG
AACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTGCTAATATGCCC
TTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTGGAATGGAGGGG
TACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCTTCGTGCATTAC
CCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGCTGGTAAACGAT
AAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAATGTGGGTGACAC
GGCCAACGTCACTACCATCACCATTCATGGCCTGTATGGCAGTGCTCAGA
GTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTTCGGGAATCATT
AACATCTGGACGGGGACGGAACATCTCCCGGCATTCAATTTTGTGTGTGC
GTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCAATTTCAGGTCA
TGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTCCTAATGCAGCG
GCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTAGGAGCAGTGGG
TTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAGAGAAGTGACTATT
TGATTGTCGGGCGAGAAGAGAGCAATTGTGTGTACATGTATGAATGTGTG
TGCATTCATGTGAACGAATAACGAGTGAAATAAAGAATGGAAGTGTGCAA
GCGAGAGAGCGTATGTGCATGTGCGTGAAGAAGGCAACCGGACAATTAAC
CGACAACAATCGTCACGGGAAAGGGTGTTCCGATAAGGGAAAAGGGGCGT
GTGAGTGGAACTCACATGTTACCAGAAAGCGAAAAGAGAAGCATAAGGAC
AAAGCAAGAGAAATGAGCCCCAAGAA
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protein sequence of jgi.p|Nanoce1779_2|583193

>mRNA_3724-protein ID=mRNA_3724-protein|Name=jgi.p|Nanoce1779_2|583193|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MKFFSGSSPILLALFGILVVSHGPRATDADASLTTKEGSDPSLVPTFVSM
KAPSLMTSSPTKAPSVATSSPTKAPSMATRSPTAAAPAPPAVADDLLQEE
KDENENPVVVIDMKVAGATREQVEAVAALVQYIANMPFHVANVSKINVTV
EWRGTVVEGGASPTRSLRALPTIPVVHEEDIWELVNDKDKNKGKKQCSLN
VGDTANVTTITIHGLYGSAQSIKQVEDFLSFLSSGIINIWTGTEHLPAFN
FVCASEVRMSNEAPSMQFQVMNAEEDDKRKRTGPNAAAIAVPVVFGVVLL
GAVGFVLVKKFGVGV*
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mRNA from alignment at scaffold_6:1074708..1075983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3724 ID=mRNA_3724|Name=jgi.p|Nanoce1779_2|583193|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp|location=Sequence derived from alignment at scaffold_6:1074708..1075983+ (Nannochloropsis oceanica)
AGGACAGTAATCACCTTTTCTCTCTCTTCCATACCTGTAATGAAGTTCTT
CTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGATCCTAGTCGTAA
GCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCACAACCAAGGAG
GGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATGAAAGCTCCATC
ATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGCGACAAGCTCGC
CCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTGCTGCCGCACCC
GCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAGAAGGACGAGAA
TGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGGGGCCACCCGAG
AACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTGCTAATATGCCC
TTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTGGAATGGAGGGG
TACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCTTCGTGCATTAC
CCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGCTGGTAAACGAT
AAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAATGTGGGTGACAC
GGCCAACGTCACTACCATCACCATTCATGGCCTGTATGGCAGTGCTCAGA
GTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTTCGGGAATCATT
AACATCTGGACGGGGACGGAACATCTCCCGGCATTCAATTTTGTGTGTGC
GTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCAATTTCAGGTCA
TGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTCCTAATGCAGCG
GCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTAGGAGCAGTGGG
TTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAGAGAAGTGACTATT
TGATTGTCGGGCGAGAAGAGAGCAATTGTGTGTACATGTATGAATGTGTG
TGCATTCATGTGAACGAATAACGAGTGAAATAAAGAATGGAAGTGTGCAA
GCGAGAGAGCGTATGTGCATGTGCGTGAAGAAGGCAACCGGACAATTAAC
CGACAACAATCGTCACGGGAAAGGGTGTTCCGATAAGGGAAAAGGGGCGT
GTGAGTGGAACTCACATGTTACCAGAAAGCGAAAAGAGAAGCATAAGGAC
AAAGCAAGAGAAATGAGCCCCAAGAA
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Coding sequence (CDS) from alignment at scaffold_6:1074708..1075983+

>mRNA_3724 ID=mRNA_3724|Name=jgi.p|Nanoce1779_2|583193|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_6:1074708..1075983+ (Nannochloropsis oceanica)
ATGAAGTTCTTCTCCGGCAGTAGCCCCATCTTGCTGGCTCTTTTTGGGAT
CCTAGTCGTAAGCCATGGGCCGCGGGCTACGGATGCCGATGCCAGTCTCA
CAACCAAGGAGGGCTCAGACCCCTCCTTGGTACCTACCTTTGTGTCCATG
AAAGCTCCATCATTGATGACAAGCTCACCCACGAAAGCCCCATCGGTGGC
GACAAGCTCGCCCACAAAAGCCCCGTCGATGGCGACACGCTCGCCTACTG
CTGCCGCACCCGCTCCTCCAGCCGTGGCTGATGACCTTCTGCAAGAGGAG
AAGGACGAGAATGAGAACCCCGTCGTGGTGATTGACATGAAAGTCGCTGG
GGCCACCCGAGAACAAGTAGAGGCAGTGGCAGCCTTGGTCCAGTACATTG
CTAATATGCCCTTCCATGTCGCAAACGTATCCAAGATCAATGTCACAGTG
GAATGGAGGGGTACGGTCGTAGAGGGCGGTGCCAGCCCAACACGCTCCCT
TCGTGCATTACCCACGATACCGGTAGTCCATGAAGAGGATATCTGGGAGC
TGGTAAACGATAAGGATAAAAATAAAGGAAAGAAGCAATGCAGCCTAAAT
GTGGGTGACACGGCCAACGTCACTACCATCACCATTCATGGCCTGTATGG
CAGTGCTCAGAGTATCAAACAAGTGGAAGACTTCCTGTCCTTCCTGTCTT
CGGGAATCATTAACATCTGGACGGGGACGGAACATCTCCCGGCATTCAAT
TTTGTGTGTGCGTCCGAGGTGCGCATGAGCAATGAAGCTCCCTCCATGCA
ATTTCAGGTCATGAATGCAGAGGAGGATGACAAGAGGAAAAGGACGGGTC
CTAATGCAGCGGCTATTGCAGTGCCTGTTGTGTTTGGTGTCGTGCTGTTA
GGAGCAGTGGGTTTCGTTCTCGTTAAAAAGTTTGGAGTCGGTGTGTAG
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Synonyms
Publications