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Properties
| Property Name | Value |
|---|
| TranscriptId | 583277 |
| Track | FilteredModels2 |
| ProteinId | 583191 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:1071813..1074173 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3723 ID=mRNA_3723|Name=jgi.p|Nanoce1779_2|583191|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp
ACAGCACAAGCCAGAGATGCAGCGTTTGGTAGCCTTGCGGCAGGCAGTGG
GCGCCGGAACTCTTGGCGTCGTTCGCAACAACATGCCAAGCTCCCTGTCC
TCCTTGGCAAGCGGTAACATTTCGTCTGAAGATGTGGTCGCTTCGAGCAG
CAGCAACAGCAACACACCCACTTGCAAGGGCGTGCCTTCGACTCCTTCCC
CCCCTACCACTGCCACCCCTCCTTCCACCCTCCACGACATTATGAAGCAA
TCTTCTTCCATCTCCTCTAGCAGCAGCGCCGAAGACCAAGAAGCCCTTCT
TCGACAAGCAGGAAAGGAACTTGGACGGGCCTGGAAGCAGGAAGGAGGGG
TCAAGCCAGGGATTGCAAGGTTCGAGCGGATTTTGCTAGGGGAAGATTTG
GAGGCGATGGAGCGGTGCTGGAGGGAGATGCGGAAGGAAGGATTGGATTT
TTGGCACATGCAGAAATTTTTGGGGCTGCTATTGGAAGACCGGCATTTGG
ACGTGCGTGGTGATGGGGGTTCGTCGTTGTCGAAGCATCATCAACGCCAC
CACCAGCAGGGAAGGACTACGAAGGCCAGCAGTGGGGAGCTCCCCAAGCA
GCGACTGCGGCTCGCCTGGTCCATTTTCGACCACATGACAGCAGTTGAAA
AGGCGGCTGCAAATAAAGGACCGCGGAAGGACGGTGCGGCAAAGGCAGCT
CAAAACAGCGCAAAGGCAGCTCTGAACAGCGACGATGCAACAGCATCAGC
ACCAGCAGCATCGGGGGCCTTGCGTACGATCGCATCCCACCACTGGGGCC
GGGTCTACAGTTGCCTCCTCAAGGCTTGTGCCGCCGTCGGGGATGGATCA
CGGGCCAAGGAGTTGTCAGACCACATGGAGTCAGCGGGAATCCTTCCTGG
GGAAGAGGCGTTGAGCAACCTAGTCATGGCTCTGGCCAAGACCCGGATCC
GCCACGAAGCACAAGAGCATTTTGAGCGCGCTCGCCGTCGAGGGCTTACC
CTTTCCTCGGCAGCCAAGAGCTGCCTTATTTCTTGTCATGCCCGTGCATT
GGACGGCGCGGCGGCTGCGCATGTCCTGAGTGCCGCGATCCAGGAAGCGA
CCTTGAATGATAACCCAGGGCAGGTATCGGGGAACATGGTGAAGAAGGTG
TTGGAAGTAGGAATTGAAACAGGCGATGTCGATGTTTTGCGGCAGGGATT
AACGGCACTGTCTGTGCCGGTGGATCGTGGGATGGCACTTCAGATCTTAA
ATGTTGCGGCAAGGAAGGGCGATGGGAAGTTGGCGATGGACATGTTCTAT
GCGTCTGAAGGGTGGGGCTACGCACCTACAGCGTCGGCGTTTAATGCCGT
GGTGCAAGCCCTGGGCCTCTCGAAGAATGACGTGGCAATGCTCAAGGCAT
TAAATGAAATGTGTGCTTGGGGGTTTTCGCCGTCGTCGGGAACCCTGCAT
TTGTTGGCGCGACAGCTGTCTCAATCTGTCACCAGGCTGGACGAGGCCTA
CAACAATTTGGTGGCCATGCGGAGAGCGAACGAGGAGTATGTGCGAGCGC
AGGAGCAACAGATGCAAGCGGAAGCAAAGGCGGGTGGGGAGGCTAATAGT
GGTGGAAAAAGGGGCGAGGGGGCGACGGCTCCGTTTGCGAATGCTCCCTT
GCCCGTGAGCGCCTCTGCCGTCTACCTTATTGTGTTGGGGTGTGCGTACG
GTAATCAGCTCGATCGTGCGTTTGCGACCTTTGAAGATTACGGCCCTGTT
TTTGGACTGGTGCATGACACGGCCGTGTGCAACGCTTTGTTATTAGCCTG
TCTCCGCTCGCGCTCGCTGCAGGTAGGGGCGGCCACATCGGTCATGACGG
AGATGGATCGCCTCGGCGTCGCGCCGGACGACGAAACTTGCCACTTGATG
GTTCGCATCCTTGTACAGGCCAAGGAAGCGGACGCTAAGAGAGTGGAGCA
AGTTCTGTCATTCATGGACCAAAAGGGTGTGGTGCCCCGGGCGAGCACCC
AGCGGCTTCTTATTTTGTGGCACGCACTGTTAGGGGAACATGACCGGGCG
CAAGAGCTACTGAGTGGATTGCAAGCACAGGGTGGGTATATGCCATCGTA
TATTGAAGAGAGATTGCGGCAGATTCGGGAGAATGGGGATCGGTTGTGAG
GTGAGAGGGATGACATGTATGCTTGCCTAAGGAATGCGGGTAGGGATTGG
AAAGAACACGATAGTATTAAAATAGAAAAAGAAAAATGTTTTTCAGACAT
TGAAGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|583191 >mRNA_3723-protein ID=mRNA_3723-protein|Name=jgi.p|Nanoce1779_2|583191|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MQRLVALRQAVGAGTLGVVRNNMPSSLSSLASGNISSEDVVASSSSNSNT
PTCKGVPSTPSPPTTATPPSTLHDIMKQSSSISSSSSAEDQEALLRQAGK
ELGRAWKQEGGVKPGIARFERILLGEDLEAMERCWREMRKEGLDFWHMQK
FLGLLLEDRHLDVRGDGGSSLSKHHQRHHQQGRTTKASSGELPKQRLRLA
WSIFDHMTAVEKAAANKGPRKDGAAKAAQNSAKAALNSDDATASAPAASG
ALRTIASHHWGRVYSCLLKACAAVGDGSRAKELSDHMESAGILPGEEALS
NLVMALAKTRIRHEAQEHFERARRRGLTLSSAAKSCLISCHARALDGAAA
AHVLSAAIQEATLNDNPGQVSGNMVKKVLEVGIETGDVDVLRQGLTALSV
PVDRGMALQILNVAARKGDGKLAMDMFYASEGWGYAPTASAFNAVVQALG
LSKNDVAMLKALNEMCAWGFSPSSGTLHLLARQLSQSVTRLDEAYNNLVA
MRRANEEYVRAQEQQMQAEAKAGGEANSGGKRGEGATAPFANAPLPVSAS
AVYLIVLGCAYGNQLDRAFATFEDYGPVFGLVHDTAVCNALLLACLRSRS
LQVGAATSVMTEMDRLGVAPDDETCHLMVRILVQAKEADAKRVEQVLSFM
DQKGVVPRASTQRLLILWHALLGEHDRAQELLSGLQAQGGYMPSYIEERL
RQIRENGDRL* back to topmRNA from alignment at scaffold_6:1071813..1074173+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3723 ID=mRNA_3723|Name=jgi.p|Nanoce1779_2|583191|organism=Nannochloropsis oceanica|type=mRNA|length=2361bp|location=Sequence derived from alignment at scaffold_6:1071813..1074173+ (Nannochloropsis oceanica)
ACAGCACAAGCCAGAGATGCAGCGTTTGGTAGCCTTGCGGCAGGCAGTGG
GCGCCGGAACTCTTGGCGTCGTTCGCAACAACATGCCAAGGTATGATGAA
TATGCGGCGTCCGTCATCGTTGCCCTCCGTTCTCCATGTTGTTCCTCTCA
CCGCGCACTACCCCACATCCCACAATCTCACTATCCACTACAGCTCCCTG
TCCTCCTTGGCAAGCGGTAACATTTCGTCTGAAGATGTGGTCGCTTCGAG
CAGCAGCAACAGCAACACACCCACTTGCAAGGGCGTGCCTTCGACTCCTT
CCCCCCCTACCACTGCCACCCCTCCTTCCACCCTCCACGACATTATGAAG
CAATCTTCTTCCATCTCCTCTAGCAGCAGCGCCGAAGACCAAGAAGCCCT
TCTTCGACAAGCAGGAAAGGAACTTGGACGGGCCTGGAAGCAGGAAGGAG
GGGTCAAGCCAGGGATTGCAAGGTTCGAGCGGATTTTGCTAGGGGAAGAT
TTGGAGGCGATGGAGCGGTGCTGGAGGGAGATGCGGAAGGAAGGATTGGA
TTTTTGGCACATGCAGAAATTTTTGGGGCTGCTATTGGAAGACCGGCATT
TGGACGTGCGTGGTGATGGGGGTTCGTCGTTGTCGAAGCATCATCAACGC
CACCACCAGCAGGGAAGGACTACGAAGGCCAGCAGTGGGGAGCTCCCCAA
GCAGCGACTGCGGCTCGCCTGGTCCATTTTCGACCACATGACAGCAGTTG
AAAAGGCGGCTGCAAATAAAGGACCGCGGAAGGACGGTGCGGCAAAGGCA
GCTCAAAACAGCGCAAAGGCAGCTCTGAACAGCGACGATGCAACAGCATC
AGCACCAGCAGCATCGGGGGCCTTGCGTACGATCGCATCCCACCACTGGG
GCCGGGTCTACAGTTGCCTCCTCAAGGCTTGTGCCGCCGTCGGGGATGGA
TCACGGGCCAAGGAGTTGTCAGACCACATGGAGTCAGCGGGAATCCTTCC
TGGGGAAGAGGCGTTGAGCAACCTAGTCATGGCTCTGGCCAAGACCCGGA
TCCGCCACGAAGCACAAGAGCATTTTGAGCGCGCTCGCCGTCGAGGGCTT
ACCCTTTCCTCGGCAGCCAAGAGCTGCCTTATTTCTTGTCATGCCCGTGC
ATTGGACGGCGCGGCGGCTGCGCATGTCCTGAGTGCCGCGATCCAGGAAG
CGACCTTGAATGATAACCCAGGGCAGGTATCGGGGAACATGGTGAAGAAG
GTGTTGGAAGTAGGAATTGAAACAGGCGATGTCGATGTTTTGCGGCAGGG
ATTAACGGCACTGTCTGTGCCGGTGGATCGTGGGATGGCACTTCAGATCT
TAAATGTTGCGGCAAGGAAGGGCGATGGGAAGTTGGCGATGGACATGTTC
TATGCGTCTGAAGGGTGGGGCTACGCACCTACAGCGTCGGCGTTTAATGC
CGTGGTGCAAGCCCTGGGCCTCTCGAAGAATGACGTGGCAATGCTCAAGG
CATTAAATGAAATGTGTGCTTGGGGGTTTTCGCCGTCGTCGGGAACCCTG
CATTTGTTGGCGCGACAGCTGTCTCAATCTGTCACCAGGCTGGACGAGGC
CTACAACAATTTGGTGGCCATGCGGAGAGCGAACGAGGAGTATGTGCGAG
CGCAGGAGCAACAGATGCAAGCGGAAGCAAAGGCGGGTGGGGAGGCTAAT
AGTGGTGGAAAAAGGGGCGAGGGGGCGACGGCTCCGTTTGCGAATGCTCC
CTTGCCCGTGAGCGCCTCTGCCGTCTACCTTATTGTGTTGGGGTGTGCGT
ACGGTAATCAGCTCGATCGTGCGTTTGCGACCTTTGAAGATTACGGCCCT
GTTTTTGGACTGGTGCATGACACGGCCGTGTGCAACGCTTTGTTATTAGC
CTGTCTCCGCTCGCGCTCGCTGCAGGTAGGGGCGGCCACATCGGTCATGA
CGGAGATGGATCGCCTCGGCGTCGCGCCGGACGACGAAACTTGCCACTTG
ATGGTTCGCATCCTTGTACAGGCCAAGGAAGCGGACGCTAAGAGAGTGGA
GCAAGTTCTGTCATTCATGGACCAAAAGGGTGTGGTGCCCCGGGCGAGCA
CCCAGCGGCTTCTTATTTTGTGGCACGCACTGTTAGGGGAACATGACCGG
GCGCAAGAGCTACTGAGTGGATTGCAAGCACAGGGTGGGTATATGCCATC
GTATATTGAAGAGAGATTGCGGCAGATTCGGGAGAATGGGGATCGGTTGT
GAGGTGAGAGGGATGACATGTATGCTTGCCTAAGGAATGCGGGTAGGGAT
TGGAAAGAACACGATAGTATTAAAATAGAAAAAGAAAAATGTTTTTCAGA
CATTGAAGTGA back to topCoding sequence (CDS) from alignment at scaffold_6:1071813..1074173+ >mRNA_3723 ID=mRNA_3723|Name=jgi.p|Nanoce1779_2|583191|organism=Nannochloropsis oceanica|type=CDS|length=4266bp|location=Sequence derived from alignment at scaffold_6:1071813..1074173+ (Nannochloropsis oceanica)
ATGCAGCGTTTGGTAGCCTTGCGGCAGGCAGTGGGCGCCGGAACTCTTGG
CGTCGTTCGCAACAACATGCCAAGCTCCCTGTCCTCCTTGGCAAGCGGTA
ACATTTCGTCTGAAGATGTGGTCGCTTCGAGCAGCAGCAACAGCAACACA
CCCACTTGCAAGGGCGTGCCTTCGACTCCTTCCCCCCCTACCACTGCCAC
CCCTCCTTCCACCCTCCACGACATTATGAAGCAATCTTCTTCCATCTCCT
CTAGCAGCAGCGCCGAAGACCAAGAAGCCCTTCTTCGACAAGCAGGAAAG
GAACTTGGACGGGCCTGGAAGCAGGAAGGAGGGGTCAAGCCAGGGATTGC
AAGGTTCGAGCGGATTTTGCTAGGGGAAGATTTGGAGGCGATGGAGCGGT
GCTGGAGGGAGATGCGGAAGGAAGGATTGGATTTTTGGCACATGCAGAAA
TTTTTGGGGCTGCTATTGGAAGACCGGCATTTGGACGTGCGTGGTGATGG
GGGTTCGTCGTTGTCGAAGCATCATCAACGCCACCACCAGCAGGGAAGGA
CTACGAAGGCCAGCAGTGGGGAGCTCCCCAAGCAGCGACTGCGGCTCGCC
TGGTCCATTTTCGACCACATGACAGCAGTTGAAAAGGCGGCTGCAAATAA
AGGACCGCGGAAGGACGGTGCGGCAAAGGCAGCTCAAAACAGCGCAAAGG
CAGCTCTGAACAGCGACGATGCAACAGCATCAGCACCAGCAGCATCGGGG
GCCTTGCGTACGATCGCATCCCACCACTGGGGCCGGGTCTACAGTTGCCT
CCTCAAGGCTTGTGCCGCCGTCGGGGATGGATCACGGGCCAAGGAGTTGT
CAGACCACATGGAGTCAGCGGGAATCCTTCCTGGGGAAGAGGCGTTGAGC
AACCTAGTCATGGCTCTGGCCAAGACCCGGATCCGCCACGAAGCACAAGA
GCATTTTGAGCGCGCTCGCCGTCGAGGGCTTACCCTTTCCTCGGCAGCCA
AGAGCTGCCTTATTTCTTGTCATGCCCGTGCATTGGACGGCGCGGCGGCT
GCGCATGTCCTGAGTGCCGCGATCCAGGAAGCGACCTTGAATGATAACCC
AGGGCAGGTATCGGGGAACATGGTGAAGAAGGTGTTGGAAGTAGGAATTG
AAACAGGCGATGTCGATGTTTTGCGGCAGGGATTAACGGCACTGTCTGTG
CCGGTGGATCGTGGGATGGCACTTCAGATCTTAAATGTTGCGGCAAGGAA
GGGCGATGGGAAGTTGGCGATGGACATGTTCTATGCGTCTGAAGGGTGGG
GCTACGCACCTACAGCGTCGGCGTTTAATGCCGTGGTGCAAGCCCTGGGC
CTCTCGAAGAATGACGTGGCAATGCTCAAGGCATTAAATGAAATGTGTGC
TTGGGGGTTTTCGCCGTCGTCGGGAACCCTGCATTTGTTGGCGCGACAGC
TGTCTCAATCTGTCACCAGGCTGGACGAGGCCTACAACAATTTGGTGGCC
ATGCGGAGAGCGAACGAGGAGTATGTGCGAGCGCAGGAGCAACAGATGCA
AGCGGAAGCAAAGGCGGGTGGGGAGGCTAATAGTGGTGGAAAAAGGGGCG
AGGGGGCGACGGCTCCGTTTGCGAATGCTCCCTTGCCCGTGAGCGCCTCT
GCCGTCTACCTTATTGTGTTGGGGTGTGCGTACGGTAATCAGCTCGATCG
TGCGTTTGCGACCTTTGAAGATTACGGCCCTGTTTTTGGACTGGTGCATG
ACACGGCCGTGTGCAACGCTTTGTTATTAGCCTGTCTCCGCTCGCGCTCG
CTGCAGGTAGGGGCGGCCACATCGGTCATGACGGAGATGGATCGCCTCGG
CGTCGCGCCGGACGACGAAACTTGCCACTTGATGGTTCGCATCCTTGTAC
AGGCCAAGGAAGCGGACGCTAAGAGAGTGGAGCAAGTTCTGTCATTCATG
GACCAAAAGGGTGTGGTGCCCCGGGCGAGCACCCAGCGGCTTCTTATTTT
GTGGCACGCACTGTTAGGGGAACATGACCGGGCGCAAGAGCTACTGAGTG
GATTGCAAGCACAGGGTGGGTATATGCCATCGTATATTGAAGAGAGATTG
CGGCAGATTCGGGAGAATGGGGATCGGTTGTGAATGCAGCGTTTGGTAGC
CTTGCGGCAGGCAGTGGGCGCCGGAACTCTTGGCGTCGTTCGCAACAACA
TGCCAAGCTCCCTGTCCTCCTTGGCAAGCGGTAACATTTCGTCTGAAGAT
GTGGTCGCTTCGAGCAGCAGCAACAGCAACACACCCACTTGCAAGGGCGT
GCCTTCGACTCCTTCCCCCCCTACCACTGCCACCCCTCCTTCCACCCTCC
ACGACATTATGAAGCAATCTTCTTCCATCTCCTCTAGCAGCAGCGCCGAA
GACCAAGAAGCCCTTCTTCGACAAGCAGGAAAGGAACTTGGACGGGCCTG
GAAGCAGGAAGGAGGGGTCAAGCCAGGGATTGCAAGGTTCGAGCGGATTT
TGCTAGGGGAAGATTTGGAGGCGATGGAGCGGTGCTGGAGGGAGATGCGG
AAGGAAGGATTGGATTTTTGGCACATGCAGAAATTTTTGGGGCTGCTATT
GGAAGACCGGCATTTGGACGTGCGTGGTGATGGGGGTTCGTCGTTGTCGA
AGCATCATCAACGCCACCACCAGCAGGGAAGGACTACGAAGGCCAGCAGT
GGGGAGCTCCCCAAGCAGCGACTGCGGCTCGCCTGGTCCATTTTCGACCA
CATGACAGCAGTTGAAAAGGCGGCTGCAAATAAAGGACCGCGGAAGGACG
GTGCGGCAAAGGCAGCTCAAAACAGCGCAAAGGCAGCTCTGAACAGCGAC
GATGCAACAGCATCAGCACCAGCAGCATCGGGGGCCTTGCGTACGATCGC
ATCCCACCACTGGGGCCGGGTCTACAGTTGCCTCCTCAAGGCTTGTGCCG
CCGTCGGGGATGGATCACGGGCCAAGGAGTTGTCAGACCACATGGAGTCA
GCGGGAATCCTTCCTGGGGAAGAGGCGTTGAGCAACCTAGTCATGGCTCT
GGCCAAGACCCGGATCCGCCACGAAGCACAAGAGCATTTTGAGCGCGCTC
GCCGTCGAGGGCTTACCCTTTCCTCGGCAGCCAAGAGCTGCCTTATTTCT
TGTCATGCCCGTGCATTGGACGGCGCGGCGGCTGCGCATGTCCTGAGTGC
CGCGATCCAGGAAGCGACCTTGAATGATAACCCAGGGCAGGTATCGGGGA
ACATGGTGAAGAAGGTGTTGGAAGTAGGAATTGAAACAGGCGATGTCGAT
GTTTTGCGGCAGGGATTAACGGCACTGTCTGTGCCGGTGGATCGTGGGAT
GGCACTTCAGATCTTAAATGTTGCGGCAAGGAAGGGCGATGGGAAGTTGG
CGATGGACATGTTCTATGCGTCTGAAGGGTGGGGCTACGCACCTACAGCG
TCGGCGTTTAATGCCGTGGTGCAAGCCCTGGGCCTCTCGAAGAATGACGT
GGCAATGCTCAAGGCATTAAATGAAATGTGTGCTTGGGGGTTTTCGCCGT
CGTCGGGAACCCTGCATTTGTTGGCGCGACAGCTGTCTCAATCTGTCACC
AGGCTGGACGAGGCCTACAACAATTTGGTGGCCATGCGGAGAGCGAACGA
GGAGTATGTGCGAGCGCAGGAGCAACAGATGCAAGCGGAAGCAAAGGCGG
GTGGGGAGGCTAATAGTGGTGGAAAAAGGGGCGAGGGGGCGACGGCTCCG
TTTGCGAATGCTCCCTTGCCCGTGAGCGCCTCTGCCGTCTACCTTATTGT
GTTGGGGTGTGCGTACGGTAATCAGCTCGATCGTGCGTTTGCGACCTTTG
AAGATTACGGCCCTGTTTTTGGACTGGTGCATGACACGGCCGTGTGCAAC
GCTTTGTTATTAGCCTGTCTCCGCTCGCGCTCGCTGCAGGTAGGGGCGGC
CACATCGGTCATGACGGAGATGGATCGCCTCGGCGTCGCGCCGGACGACG
AAACTTGCCACTTGATGGTTCGCATCCTTGTACAGGCCAAGGAAGCGGAC
GCTAAGAGAGTGGAGCAAGTTCTGTCATTCATGGACCAAAAGGGTGTGGT
GCCCCGGGCGAGCACCCAGCGGCTTCTTATTTTGTGGCACGCACTGTTAG
GGGAACATGACCGGGCGCAAGAGCTACTGAGTGGATTGCAAGCACAGGGT
GGGTATATGCCATCGTATATTGAAGAGAGATTGCGGCAGATTCGGGAGAA
TGGGGATCGGTTGTGA back to top
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