jgi.p|Nanoce1779_2|371362, mRNA_3722 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|371362
Unique Name	mRNA_3722
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1447
Alignment location	scaffold_6:1069750..1071673 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	371448
Track	FilteredModels2
ProteinId	371362

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1069750..1071673 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|371362	gene_3722	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|371362	mRNA_3722-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3722	CDS_3722	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1069750..1071673-
coding sequence from alignment at scaffold_6:1069750..1071673-

mRNA sequence

>mRNA_3722 ID=mRNA_3722|Name=jgi.p|Nanoce1779_2|371362|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp
CCTACTCCTTCCAAGCACCCATCAGAACGTGTTATGGATAGGAATGCGAA
GGGCGGAGCAGATGCATGAGGTGAAGATGTACTAAGCCTCACATCGGCAT
CGGCACACGCTTGATGTAATTCCCGGTGTCGAAGTTTATGCCGCGAAAGC
AAAGAACTATTGGAACTAATCTCCATCTAACTTTGAGCTACACATGTTAC
ACATCTCTCCGTCTAGACGACTGCAGGAACCATGGCCGCGACGACAGCCA
CGACGACTTATGAAAACTCTCCCGCCTGGCGCAAGCAAATGATTTTTTTG
CCCGCTGAACTCCATCTCACCGCCGAGACAATGCCCAGCGAGTCGACCTG
GACATACAAGGGCCATGCCGTACACGTAGACAGCTGCGGGGATTCTGCAA
GTTCGCCCGTCACGCTGATTATGCTTCACGGCGTCGGTACCAACGCCCGA
CAACAGTCCTTGCTTGTTGGGGCGCCCCTCGCGCGTCTCCATAATTTCCA
TTCCCTTGCCTTGGATTGTCCGGGGTATGGCGCGACAAAAGTAGCCCCGA
AAGCCAAGGTCATATACAGCGACTGGGTGGATTTAGTAAGTGACTTTGTG
GATGACCAAGCCGCGAGTAATGGAGGAAAGCCCATCGTGTTGTACGGGTT
GAGCGCTGGAGGCATGTTAGCGTATCAAGTGGCAGCCCGGAACAAGAACG
TGAAAGGCGTGGTAGGGATGACGTTCTTGGACCAGCGGGTGCAGGAGGTC
CGGGATACTACGGCGCATGACCTGGCCGGCTCCCGTGTGGGAGTGCCTTT
AGCTGCTATGGTTAAAAATACCTTGTTGGGAGGAACGAAGCTTCCCATGG
CTTTGACGAGCAAGATGTGGGCCCTCGTTAATAACAAGCCCGCCCTCAAG
GCCTTTCTCTCCGACCGGTCCTCCGCAGGGAATTGGGTCGCCATCCGTTT
CCTCGCTGATTATATGAGCTACGCTCCTGCGGTGGAGCCAGAGCTGTTTG
ACACCTGCCCGATTTTGCTGACGCAGCCGGCGGAGGATAAGTGGACGCCA
CTGCGGTTGAGGTAGGAATGGGATGGAAGGAGGGAAGAGAGTGATGGGGC
TTGACGCCATGTGTTTCTTGGTAGAAATTTCAAACACAGCGACGACCTTA
ATCACGAATGACTGGCTACTTATCTATGACCCTCTTTCTCTCACCTAGTC
AATATCCTTATCTCCTTCCTTACCTGCCCTCCATCCCACTCTCCTAGCGA
GCTTTTTCTCAAGCGCATCACCAAGGTACCCGTCCAAACGGTGATGCTCG
ACGGGGCAGGACACTACCCATTGGAGCAACCAGGCATCGACCAGTTGCAC
GCAGCCATTGCGGCATTTGTCAAGGACACGGTGCTGGCGGGGAAGTAAAT
GGAGGCAGGATTGGAGGGGAGATTGGAAGCGAGGGGGAGGAGGGGGG

protein sequence of jgi.p|Nanoce1779_2|371362

>mRNA_3722-protein ID=mRNA_3722-protein|Name=jgi.p|Nanoce1779_2|371362|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MAATTATTTYENSPAWRKQMIFLPAELHLTAETMPSESTWTYKGHAVHVD
SCGDSASSPVTLIMLHGVGTNARQQSLLVGAPLARLHNFHSLALDCPGYG
ATKVAPKAKVIYSDWVDLVSDFVDDQAASNGGKPIVLYGLSAGGMLAYQV
AARNKNVKGVVGMTFLDQRVQEVRDTTAHDLAGSRVGVPLAAMVKNTLLG
GTKLPMALTSKMWALVNNKPALKAFLSDRSSAGNWVAIRFLADYMSYAPA
VEPELFDTCPILLTQPAEDKWTPLRLR*

mRNA from alignment at scaffold_6:1069750..1071673-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3722 ID=mRNA_3722|Name=jgi.p|Nanoce1779_2|371362|organism=Nannochloropsis oceanica|type=mRNA|length=1924bp|location=Sequence derived from alignment at scaffold_6:1069750..1071673- (Nannochloropsis oceanica)
CCTACTCCTTCCAAGCACCCATCAGAACGTGTTATGGATAGGAATGCGAA
GGGCGGAGCAGATGCATGAGGTGAAGATGTACTAAGCCTCACATCGGCAT
CGGCACACGCTTGATGTAATTCCCGGTGTCGAAGTTTATGCCGCGAAAGC
AAAGAACTATTGGAACTAATCTCCATCTAACTTTGAGCTACACATGTTAC
ACATCTCTCCGTCTAGACGACTGCAGGAACCATGGCCGCGACGACAGCCA
CGACGACTTATGAAAACTCTCCCGCCTGGCGCAAGCAAATGATTTTTTTG
CCCGCTGAACTCCATCTCACCGCCGAGACAATGCCCAGCGAGTCGACCTG
GACATACAAGGGCCATGCCGTACACGTAGACAGCTGCGGGGATTCTGCAA
GTTCGCCCGTCACGCTGATTATGCTTCACGGTATGTATATTTGGATGAGG
AGCTCTGGAAAGATTTTGACAGCTATGGTGCCGGCATATATTTGTTTGCC
GTGTCGGCCTCCCTTGACTTGTGGACGCGTCGTACGCGTCCTCTCTGCCA
CCATACCAATCGTTTCCTTGCCTATACCCTCCCTTTTTTGTACAGGCGTC
GGTACCAACGCCCGACAACAGTCCTTGCTTGTTGGGGCGCCCCTCGCGCG
TCTCCATAATTTCCATTCCCTTGCCTTGGATTGTCCGGGGTATGGCGCGA
CAAAAGTAGCCCCGAAAGCCAAGGTCATATACAGCGACTGGGTGGATTTA
GTAAGTGACTTTGTGGATGACCAAGCCGCGAGTAATGGAGGAAAGCCCAT
CGTGTTGTACGGGTTGAGCGCTGGAGGCATGTTAGCGTATCAAGTGGCAG
CCCGGAACAAGAACGTGAAAGGCGTGGTAGGGATGACGTTCTTGGACCAG
CGGGTGCAGGAGGTAAGTTGGAAGAAAAAGAGGGGGCGAGGGAGGGAGAG
CATCATCCATGCTGTCCAATTGCTCAACCGCCGCCCTTTCTCTTTCTCTC
TCCCTCCCTCCCTTCTTCCCGTAGGTCCGGGATACTACGGCGCATGACCT
GGCCGGCTCCCGTGTGGGAGTGCCTTTAGCTGCTATGGTTAAAAATACCT
TGTTGGGAGGAACGAAGCTTCCCATGGCTTTGACGAGCAAGGTAAGGAGG
GGAAGGAGGGAGGAGGGCACGAAGGAGGGAGGAGTGGACGACACGAAACA
GTCTTGTCGTTTTCTCATGTAATGTGATCCCTGAGAACCCGTCCGAACGC
ATCGTGTCCCACTTCAAATCACATGTCTACTATGATTATTTTACTCGCTC
CCTTCTTCCCTCCCTCCCTTCTTCCCTCCTTCCCTTCCTAGATGTGGGCC
CTCGTTAATAACAAGCCCGCCCTCAAGGCCTTTCTCTCCGACCGGTCCTC
CGCAGGGAATTGGGTCGCCATCCGTTTCCTCGCTGATTATATGAGCTACG
CTCCTGCGGTGGAGCCAGAGCTGTTTGACACCTGCCCGATTTTGCTGACG
CAGCCGGCGGAGGATAAGTGGACGCCACTGCGGTTGAGGTAGGAATGGGA
TGGAAGGAGGGAAGAGAGTGATGGGGCTTGACGCCATGTGTTTCTTGGTA
GAAATTTCAAACACAGCGACGACCTTAATCACGAATGACTGGCTACTTAT
CTATGACCCTCTTTCTCTCACCTAGTCAATATCCTTATCTCCTTCCTTAC
CTGCCCTCCATCCCACTCTCCTAGCGAGCTTTTTCTCAAGCGCATCACCA
AGGTACCCGTCCAAACGGTGATGCTCGACGGGGCAGGACACTACCCATTG
GAGCAACCAGGCATCGACCAGTTGCACGCAGCCATTGCGGCATTTGTCAA
GGACACGGTGCTGGCGGGGAAGTAAATGGAGGCAGGATTGGAGGGGAGAT
TGGAAGCGAGGGGGAGGAGGGGGG

Coding sequence (CDS) from alignment at scaffold_6:1069750..1071673-

>mRNA_3722 ID=mRNA_3722|Name=jgi.p|Nanoce1779_2|371362|organism=Nannochloropsis oceanica|type=CDS|length=3336bp|location=Sequence derived from alignment at scaffold_6:1069750..1071673- (Nannochloropsis oceanica)
ATGTGGGCCCTCGTTAATAACAAGCCCGCCCTCAAGGCCTTTCTCTCCGA
CCGGTCCTCCGCAGGGAATTGGGTCGCCATCCGTTTCCTCGCTGATTATA
TGAGCTACGCTCCTGCGGTGGAGCCAGAGCTGTTTGACACCTGCCCGATT
TTGCTGACGCAGCCGGCGGAGGATAAGTGGACGCCACTGCGGTTGAGGTA
GGTCCGGGATACTACGGCGCATGACCTGGCCGGCTCCCGTGTGGGAGTGC
CTTTAGCTGCTATGGTTAAAAATACCTTGTTGGGAGGAACGAAGCTTCCC
ATGGCTTTGACGAGCAAGGCGTCGGTACCAACGCCCGACAACAGTCCTTG
CTTGTTGGGGCGCCCCTCGCGCGTCTCCATAATTTCCATTCCCTTGCCTT
GGATTGTCCGGGGTATGGCGCGACAAAAGTAGCCCCGAAAGCCAAGGTCA
TATACAGCGACTGGGTGGATTTAGTAAGTGACTTTGTGGATGACCAAGCC
GCGAGTAATGGAGGAAAGCCCATCGTGTTGTACGGGTTGAGCGCTGGAGG
CATGTTAGCGTATCAAGTGGCAGCCCGGAACAAGAACGTGAAAGGCGTGG
TAGGGATGACGTTCTTGGACCAGCGGGTGCAGGAGATGGCCGCGACGACA
GCCACGACGACTTATGAAAACTCTCCCGCCTGGCGCAAGCAAATGATTTT
TTTGCCCGCTGAACTCCATCTCACCGCCGAGACAATGCCCAGCGAGTCGA
CCTGGACATACAAGGGCCATGCCGTACACGTAGACAGCTGCGGGGATTCT
GCAAGTTCGCCCGTCACGCTGATTATGCTTCACGATGTGGGCCCTCGTTA
ATAACAAGCCCGCCCTCAAGGCCTTTCTCTCCGACCGGTCCTCCGCAGGG
AATTGGGTCGCCATCCGTTTCCTCGCTGATTATATGAGCTACGCTCCTGC
GGTGGAGCCAGAGCTGTTTGACACCTGCCCGATTTTGCTGACGCAGCCGG
CGGAGGATAAGTGGACGCCACTGCGGTTGAGGTAGGTCCGGGATACTACG
GCGCATGACCTGGCCGGCTCCCGTGTGGGAGTGCCTTTAGCTGCTATGGT
TAAAAATACCTTGTTGGGAGGAACGAAGCTTCCCATGGCTTTGACGAGCA
AGGCGTCGGTACCAACGCCCGACAACAGTCCTTGCTTGTTGGGGCGCCCC
TCGCGCGTCTCCATAATTTCCATTCCCTTGCCTTGGATTGTCCGGGGTAT
GGCGCGACAAAAGTAGCCCCGAAAGCCAAGGTCATATACAGCGACTGGGT
GGATTTAGTAAGTGACTTTGTGGATGACCAAGCCGCGAGTAATGGAGGAA
AGCCCATCGTGTTGTACGGGTTGAGCGCTGGAGGCATGTTAGCGTATCAA
GTGGCAGCCCGGAACAAGAACGTGAAAGGCGTGGTAGGGATGACGTTCTT
GGACCAGCGGGTGCAGGAGATGGCCGCGACGACAGCCACGACGACTTATG
AAAACTCTCCCGCCTGGCGCAAGCAAATGATTTTTTTGCCCGCTGAACTC
CATCTCACCGCCGAGACAATGCCCAGCGAGTCGACCTGGACATACAAGGG
CCATGCCGTACACGTAGACAGCTGCGGGGATTCTGCAAGTTCGCCCGTCA
CGCTGATTATGCTTCACGATGTGGGCCCTCGTTAATAACAAGCCCGCCCT
CAAGGCCTTTCTCTCCGACCGGTCCTCCGCAGGGAATTGGGTCGCCATCC
GTTTCCTCGCTGATTATATGAGCTACGCTCCTGCGGTGGAGCCAGAGCTG
TTTGACACCTGCCCGATTTTGCTGACGCAGCCGGCGGAGGATAAGTGGAC
GCCACTGCGGTTGAGGTAGGTCCGGGATACTACGGCGCATGACCTGGCCG
GCTCCCGTGTGGGAGTGCCTTTAGCTGCTATGGTTAAAAATACCTTGTTG
GGAGGAACGAAGCTTCCCATGGCTTTGACGAGCAAGGCGTCGGTACCAAC
GCCCGACAACAGTCCTTGCTTGTTGGGGCGCCCCTCGCGCGTCTCCATAA
TTTCCATTCCCTTGCCTTGGATTGTCCGGGGTATGGCGCGACAAAAGTAG
CCCCGAAAGCCAAGGTCATATACAGCGACTGGGTGGATTTAGTAAGTGAC
TTTGTGGATGACCAAGCCGCGAGTAATGGAGGAAAGCCCATCGTGTTGTA
CGGGTTGAGCGCTGGAGGCATGTTAGCGTATCAAGTGGCAGCCCGGAACA
AGAACGTGAAAGGCGTGGTAGGGATGACGTTCTTGGACCAGCGGGTGCAG
GAGATGGCCGCGACGACAGCCACGACGACTTATGAAAACTCTCCCGCCTG
GCGCAAGCAAATGATTTTTTTGCCCGCTGAACTCCATCTCACCGCCGAGA
CAATGCCCAGCGAGTCGACCTGGACATACAAGGGCCATGCCGTACACGTA
GACAGCTGCGGGGATTCTGCAAGTTCGCCCGTCACGCTGATTATGCTTCA
CGATGTGGGCCCTCGTTAATAACAAGCCCGCCCTCAAGGCCTTTCTCTCC
GACCGGTCCTCCGCAGGGAATTGGGTCGCCATCCGTTTCCTCGCTGATTA
TATGAGCTACGCTCCTGCGGTGGAGCCAGAGCTGTTTGACACCTGCCCGA
TTTTGCTGACGCAGCCGGCGGAGGATAAGTGGACGCCACTGCGGTTGAGG
TAGGTCCGGGATACTACGGCGCATGACCTGGCCGGCTCCCGTGTGGGAGT
GCCTTTAGCTGCTATGGTTAAAAATACCTTGTTGGGAGGAACGAAGCTTC
CCATGGCTTTGACGAGCAAGGCGTCGGTACCAACGCCCGACAACAGTCCT
TGCTTGTTGGGGCGCCCCTCGCGCGTCTCCATAATTTCCATTCCCTTGCC
TTGGATTGTCCGGGGTATGGCGCGACAAAAGTAGCCCCGAAAGCCAAGGT
CATATACAGCGACTGGGTGGATTTAGTAAGTGACTTTGTGGATGACCAAG
CCGCGAGTAATGGAGGAAAGCCCATCGTGTTGTACGGGTTGAGCGCTGGA
GGCATGTTAGCGTATCAAGTGGCAGCCCGGAACAAGAACGTGAAAGGCGT
GGTAGGGATGACGTTCTTGGACCAGCGGGTGCAGGAGATGGCCGCGACGA
CAGCCACGACGACTTATGAAAACTCTCCCGCCTGGCGCAAGCAAATGATT
TTTTTGCCCGCTGAACTCCATCTCACCGCCGAGACAATGCCCAGCGAGTC
GACCTGGACATACAAGGGCCATGCCGTACACGTAGACAGCTGCGGGGATT
CTGCAAGTTCGCCCGTCACGCTGATTATGCTTCACG

Synonyms

Publications