jgi.p|Nanoce1779_2|564599, mRNA_3721 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564599
Unique NamemRNA_3721
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length870
Alignment locationscaffold_6:1068368..1069283 -

Link to JBrowse

Properties
Property NameValue
TranscriptId564685
TrackFilteredModels2
ProteinId564599
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1068368..1069283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564599gene_3721Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564599mRNA_3721-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3721CDS_3721Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3721 ID=mRNA_3721|Name=jgi.p|Nanoce1779_2|564599|organism=Nannochloropsis oceanica|type=mRNA|length=870bp
ATGCACCGGTGCTTCAGTCGCGGGGCTTTTCTGCTCCGCCGGTTCAATCC
CACGTTGCTTACCCCTGCCCCCTTCTCTTCCCTCTCCCGGGCCCCTCCCG
TGCCCGCTGCGAATTGGCCCAAAACTCCAGCTGTGGCCACGGATGGGTTG
GACGCCGCCGTCTTTACCCCTTTGTGGGAGAGTGCGCTTGATGCCCATGC
CCGGGGACAGTACCTTGAGGCCCTGAGACAGGCCCAGGCCAGCGTGGAGA
TGGCCGCAAAGGGCAAACGAGGGAGCTTGGGACGTGAACACGCGTTGCGG
ATGGGCTATCACTTGCGGGGCCTGGCCTTATTGCAACTAGGCCGGGTGAA
TGAAGCGGTGGAAAGCCTCGAACGCGCCAAGGTTGTTGCGGTTCGTGTGA
GTGGTGCTGGGGCGGGCGACGACGCGTATACAGACCTTGGCGGAGTCTTA
AATGACTTGGGCATTGCCAAGGCGCTAGCAGGCGACGGGGAGGGGGCACA
GAAAAACATCAGTCGCACACTTTACATGGCTCAACGTGCCTACCGTCCTG
ACGAGGACTTGATATCAGCGGCTTGTAGTAATATGGCGGAGGTCATGCGA
GCAAGGGGGAAGAACGGGGAGGGGGAATGGGAGGATGAGGAGTCAGTGGA
GATGGCCGAAAGGGCGGCGCGCCTAACGGACAAGATGGAACGATTATCTT
TGATGCGGCCACCAGCAGACATGGAGGAGGAAAATGAAACGGCTGGTGCA
AAAGGTGGAGGAAAGAAGCAGAAGCAGAAGCCATTTTATCCATGGCCCGC
AAAGGAGGTGTCTGGGACCTTCCTGCAGACCTTCTCAATCTCCACGAACG
GAGCACCCGTCGCCGCCTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|564599

>mRNA_3721-protein ID=mRNA_3721-protein|Name=jgi.p|Nanoce1779_2|564599|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MHRCFSRGAFLLRRFNPTLLTPAPFSSLSRAPPVPAANWPKTPAVATDGL
DAAVFTPLWESALDAHARGQYLEALRQAQASVEMAAKGKRGSLGREHALR
MGYHLRGLALLQLGRVNEAVESLERAKVVAVRVSGAGAGDDAYTDLGGVL
NDLGIAKALAGDGEGAQKNISRTLYMAQRAYRPDEDLISAACSNMAEVMR
ARGKNGEGEWEDEESVEMAERAARLTDKMERLSLMRPPADMEEENETAGA
KGGGKKQKQKPFYPWPAKEVSGTFLQTFSISTNGAPVAA*
back to top

mRNA from alignment at scaffold_6:1068368..1069283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3721 ID=mRNA_3721|Name=jgi.p|Nanoce1779_2|564599|organism=Nannochloropsis oceanica|type=mRNA|length=916bp|location=Sequence derived from alignment at scaffold_6:1068368..1069283- (Nannochloropsis oceanica)
ATGCACCGGTGCTTCAGTCGCGGGGCTTTTCTGCTCCGCCGGTTCAATCC
CACGTTGCTTACCCCTGCCCCCTTCTCTTCCCTCTCCCGGGCCCCTCCCG
TGCCCGCTGCGAATTGGCCCAAAACTCCAGCTGTGGCCACGGATGGGTTG
GACGCCGCCGTCTTTACCCCTTTGTGGGAGAGTGCGCTTGATGCCCATGC
CCGGGGACAGTACCTTGAGGCCCTGAGACAGGCCCAGGCCAGCGTGGAGA
TGGCCGCAAAGGGCAAACGAGGGAGCTTGGGACGTGAACACGCGTTGCGG
ATGGGCTATCACTTGCGGGGCCTGGCCTTATTGCAACTAGGCCGGGTGAA
TGAAGCGGTGGAAAGCCTCGAACGCGCCAAGGTTGTTGCGGTTCGTGTGA
GTGGTGCTGGGGCGGGCGACGACGCGTATACAGACCTTGGCGGAGTCTTA
AATGACTTGGGCATTGCCAAGGCGCTAGCAGGCGACGGGGAGGGGGCACA
GAAAAACATCAGTCGCACACTTTACATGGCTCAACGTGCCTACCGTCCTG
ACGAGGACTTGATATCAGCGGCTTGTAGTAATATGGCGGAGGTCATGCGA
GCAAGGGGGAAGAACGGGGAGGGGGAATGGGAGGATGAGGAGTCAGTGGA
GATGGCCGAAAGGGCGGCGCGCCTAACGGACAAGATGGAACGATTATCTT
TGATGCGGCCACCAGCAGACATGGAGGAGGAAAATGAAACGGCTGGTGCA
AAAGGTGGAGGAGTGGGAGGGGCAAGCTGCCCCACCTCCTCCTCTTCTTC
CATTGCAGAAGAAGCAGAAGCAGAAGCCATTTTATCCATGGCCCGCAAAG
GAGGTGTCTGGGACCTTCCTGCAGACCTTCTCAATCTCCACGAACGGAGC
ACCCGTCGCCGCCTGA
back to top

Coding sequence (CDS) from alignment at scaffold_6:1068368..1069283-

>mRNA_3721 ID=mRNA_3721|Name=jgi.p|Nanoce1779_2|564599|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at scaffold_6:1068368..1069283- (Nannochloropsis oceanica)
AAGAAGCAGAAGCAGAAGCCATTTTATCCATGGCCCGCAAAGGAGGTGTC
TGGGACCTTCCTGCAGACCTTCTCAATCTCCACGAACGGAGCACCCGTCG
CCGCCTGAATGCACCGGTGCTTCAGTCGCGGGGCTTTTCTGCTCCGCCGG
TTCAATCCCACGTTGCTTACCCCTGCCCCCTTCTCTTCCCTCTCCCGGGC
CCCTCCCGTGCCCGCTGCGAATTGGCCCAAAACTCCAGCTGTGGCCACGG
ATGGGTTGGACGCCGCCGTCTTTACCCCTTTGTGGGAGAGTGCGCTTGAT
GCCCATGCCCGGGGACAGTACCTTGAGGCCCTGAGACAGGCCCAGGCCAG
CGTGGAGATGGCCGCAAAGGGCAAACGAGGGAGCTTGGGACGTGAACACG
CGTTGCGGATGGGCTATCACTTGCGGGGCCTGGCCTTATTGCAACTAGGC
CGGGTGAATGAAGCGGTGGAAAGCCTCGAACGCGCCAAGGTTGTTGCGGT
TCGTGTGAGTGGTGCTGGGGCGGGCGACGACGCGTATACAGACCTTGGCG
GAGTCTTAAATGACTTGGGCATTGCCAAGGCGCTAGCAGGCGACGGGGAG
GGGGCACAGAAAAACATCAGTCGCACACTTTACATGGCTCAACGTGCCTA
CCGTCCTGACGAGGACTTGATATCAGCGGCTTGTAGTAATATGGCGGAGG
TCATGCGAGCAAGGGGGAAGAACGGGGAGGGGGAATGGGAGGATGAGGAG
TCAGTGGAGATGGCCGAAAGGGCGGCGCGCCTAACGGACAAGATGGAACG
ATTATCTTTGATGCGGCCACCAGCAGACATGGAGGAGGAAAATGAAACGG
CTGGTGCAAAAGGTGGAGGAAAGAAGCAGAAGCAGAAGCCATTTTATCCA
TGGCCCGCAAAGGAGGTGTCTGGGACCTTCCTGCAGACCTTCTCAATCTC
CACGAACGGAGCACCCGTCGCCGCCTGAATGCACCGGTGCTTCAGTCGCG
GGGCTTTTCTGCTCCGCCGGTTCAATCCCACGTTGCTTACCCCTGCCCCC
TTCTCTTCCCTCTCCCGGGCCCCTCCCGTGCCCGCTGCGAATTGGCCCAA
AACTCCAGCTGTGGCCACGGATGGGTTGGACGCCGCCGTCTTTACCCCTT
TGTGGGAGAGTGCGCTTGATGCCCATGCCCGGGGACAGTACCTTGAGGCC
CTGAGACAGGCCCAGGCCAGCGTGGAGATGGCCGCAAAGGGCAAACGAGG
GAGCTTGGGACGTGAACACGCGTTGCGGATGGGCTATCACTTGCGGGGCC
TGGCCTTATTGCAACTAGGCCGGGTGAATGAAGCGGTGGAAAGCCTCGAA
CGCGCCAAGGTTGTTGCGGTTCGTGTGAGTGGTGCTGGGGCGGGCGACGA
CGCGTATACAGACCTTGGCGGAGTCTTAAATGACTTGGGCATTGCCAAGG
CGCTAGCAGGCGACGGGGAGGGGGCACAGAAAAACATCAGTCGCACACTT
TACATGGCTCAACGTGCCTACCGTCCTGACGAGGACTTGATATCAGCGGC
TTGTAGTAATATGGCGGAGGTCATGCGAGCAAGGGGGAAGAACGGGGAGG
GGGAATGGGAGGATGAGGAGTCAGTGGAGATGGCCGAAAGGGCGGCGCGC
CTAACGGACAAGATGGAACGATTATCTTTGATGCGGCCACCAGCAGACAT
GGAGGAGGAAAATGAAACGGCTGGTGCAAAAGGTGGAGGA
back to top
Synonyms
Publications