jgi.p|Nanoce1779_2|583181, mRNA_3720 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583181
Unique NamemRNA_3720
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length755
Alignment locationscaffold_6:1067248..1068002 -

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Properties
Property NameValue
TranscriptId583267
TrackFilteredModels2
ProteinId583181
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1067248..1068002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583181gene_3720Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583181mRNA_3720-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3720CDS_3720Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3720 ID=mRNA_3720|Name=jgi.p|Nanoce1779_2|583181|organism=Nannochloropsis oceanica|type=mRNA|length=755bp
GGGGAGGCGATGGCGGAGGTGGAGAAGCAGCAGGTACAGCAGCAGCAGGA
GGAGGAGCAACAGCAGCAGCAGCCAGCAGAGGGGAAGGGCAAGAGTATGA
GAGCTGGTGATGACGAGGAGGAGAGCACCAGCAGTACCAGCAACGCCATC
GAAGGCGTAGGATATCCTCCTCCTTCTTCTCCTTTAATTCGCACACCTGC
ACCATCATCACCACCAGAAACATCACAACCACCACCACCAGCGCCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACG
ATGCCCTCCCTCCATGCGGCCCTAACTCGTAATAAAGAGGGACTCCAAGC
TCTACTTATTGCGATAGGACATAGTCAGGCCCATGTGCACTGTGCAGTCG
ATCTTGTGGCAGCGAAGCTGCAGAGGAGGAGGAAGTTGGAGGGAGGGAGG
GGAATAAGGATGACCACTGCAATCTCGTCGTCGTCGTCGGAGGCGGGAGG
AGTAGGAGGGGGAAAAGCAGTGGCAAGAGGTGTGAAAGAGGAGCTTGACT
TCGAGGAGGGGGGAGGAATGGATGACGAGCCACCGCCTAAGTTGGAAGTA
CTATGGACGGTCCAGGGTGTGGTTGGTGTGGGTTTGAAAGGATGGAGGGT
CAAGAAGGAGGACAAGGAGGAGGAGGAGGAAGGGACGTGAGGAGGGGTGT
GTGAGGGCAGGAGTATTAAGCCGTTATAAAGAGCGGCACGGTGGATGTAG
TAAAG
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protein sequence of jgi.p|Nanoce1779_2|583181

>mRNA_3720-protein ID=mRNA_3720-protein|Name=jgi.p|Nanoce1779_2|583181|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MAEVEKQQVQQQQEEEQQQQQPAEGKGKSMRAGDDEEESTSSTSNAIEGV
GYPPPSSPLIRTPAPSSPPETSQPPPPAPAAAAAAAAAAAAAAAAATMPS
LHAALTRNKEGLQALLIAIGHSQAHVHCAVDLVAAKLQRRRKLEGGRGIR
MTTAISSSSSEAGGVGGGKAVARGVKEELDFEEGGGMDDEPPPKLEVLWT
VQGVVGVGLKGWRVKKEDKEEEEEGT*
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mRNA from alignment at scaffold_6:1067248..1068002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3720 ID=mRNA_3720|Name=jgi.p|Nanoce1779_2|583181|organism=Nannochloropsis oceanica|type=mRNA|length=755bp|location=Sequence derived from alignment at scaffold_6:1067248..1068002- (Nannochloropsis oceanica)
GGGGAGGCGATGGCGGAGGTGGAGAAGCAGCAGGTACAGCAGCAGCAGGA
GGAGGAGCAACAGCAGCAGCAGCCAGCAGAGGGGAAGGGCAAGAGTATGA
GAGCTGGTGATGACGAGGAGGAGAGCACCAGCAGTACCAGCAACGCCATC
GAAGGCGTAGGATATCCTCCTCCTTCTTCTCCTTTAATTCGCACACCTGC
ACCATCATCACCACCAGAAACATCACAACCACCACCACCAGCGCCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACG
ATGCCCTCCCTCCATGCGGCCCTAACTCGTAATAAAGAGGGACTCCAAGC
TCTACTTATTGCGATAGGACATAGTCAGGCCCATGTGCACTGTGCAGTCG
ATCTTGTGGCAGCGAAGCTGCAGAGGAGGAGGAAGTTGGAGGGAGGGAGG
GGAATAAGGATGACCACTGCAATCTCGTCGTCGTCGTCGGAGGCGGGAGG
AGTAGGAGGGGGAAAAGCAGTGGCAAGAGGTGTGAAAGAGGAGCTTGACT
TCGAGGAGGGGGGAGGAATGGATGACGAGCCACCGCCTAAGTTGGAAGTA
CTATGGACGGTCCAGGGTGTGGTTGGTGTGGGTTTGAAAGGATGGAGGGT
CAAGAAGGAGGACAAGGAGGAGGAGGAGGAAGGGACGTGAGGAGGGGTGT
GTGAGGGCAGGAGTATTAAGCCGTTATAAAGAGCGGCACGGTGGATGTAG
TAAAG
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Coding sequence (CDS) from alignment at scaffold_6:1067248..1068002-

>mRNA_3720 ID=mRNA_3720|Name=jgi.p|Nanoce1779_2|583181|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_6:1067248..1068002- (Nannochloropsis oceanica)
ATGGCGGAGGTGGAGAAGCAGCAGGTACAGCAGCAGCAGGAGGAGGAGCA
ACAGCAGCAGCAGCCAGCAGAGGGGAAGGGCAAGAGTATGAGAGCTGGTG
ATGACGAGGAGGAGAGCACCAGCAGTACCAGCAACGCCATCGAAGGCGTA
GGATATCCTCCTCCTTCTTCTCCTTTAATTCGCACACCTGCACCATCATC
ACCACCAGAAACATCACAACCACCACCACCAGCGCCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGATGCCCTCC
CTCCATGCGGCCCTAACTCGTAATAAAGAGGGACTCCAAGCTCTACTTAT
TGCGATAGGACATAGTCAGGCCCATGTGCACTGTGCAGTCGATCTTGTGG
CAGCGAAGCTGCAGAGGAGGAGGAAGTTGGAGGGAGGGAGGGGAATAAGG
ATGACCACTGCAATCTCGTCGTCGTCGTCGGAGGCGGGAGGAGTAGGAGG
GGGAAAAGCAGTGGCAAGAGGTGTGAAAGAGGAGCTTGACTTCGAGGAGG
GGGGAGGAATGGATGACGAGCCACCGCCTAAGTTGGAAGTACTATGGACG
GTCCAGGGTGTGGTTGGTGTGGGTTTGAAAGGATGGAGGGTCAAGAAGGA
GGACAAGGAGGAGGAGGAGGAAGGGACGTGA
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Synonyms
Publications