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Properties
| Property Name | Value |
|---|
| TranscriptId | 668499 |
| Track | FilteredModels2 |
| ProteinId | 668413 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:922744..925871 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_372 ID=mRNA_372|Name=jgi.p|Nanoce1779_2|668413|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp
ATGCCTAGCGAGGACGATTTGGAACGCGATAACGAGGACGATAATGACGA
CGATGACGAACACTTGGGGGGAGACTTTATGGACACCCCTTACAAGCCTC
CCTCCGTTCACCGCGCTCTTATGCACCGCGAAGCTGTGATCTTTCATAAA
GGTCACGCTCCGCTCTGCGGGAAAGCTGCTAGTCGCAAGCAAATACACTT
CAGCGACCTTGGCGTTGGGTCGAGGCTGCATTTTGATTTCATCAGAGTCC
TCATTATCAGTTTTGCACTCTTGCTTGTGTTGAATCTGCCTGTCCTTGTT
CTCTACTCGTCTGGCTCCCGCATTAAGGAAGAACAGCAGGACCTTCTAGG
CTTGTATGCTCTAATGCTTGGTAACTTGGATTCCATCGACTCCCCATCCT
CGTCGGACTGGCTTATGCAGACTGGTGCAACACGCCAAGACCACTTTTCC
ACCCTCTACCCGTTGGATGTCGCGGATTGGAAAGGTCGACCACCCCCCGC
CAATGGACCACCAAAACTACCCGTGTCTGACTTAGTTCATGTAGACGGCG
ACGAGCGTTACTCTGGAAAAAGGGTGGCAGAAGTCACCCTGGCTAAAAAG
AATGGGCGGGAGCTCCACCGCTACTTGACGCACGGTGAAAAAGCCTTGAG
ACTCAAACGTCTCTGCACTTACCTCAAAAAGCATCGCCCCACGGCCGGGC
GTAATCCCGAACCAGATTATAGCCGTGCTGAACATCGTTTGGCTAAACTG
GAGAAAGACATGGCGGCCATTGCGCACAGCTTGCGAAAAGATGCACGACG
GTCCAAGACAGAGCTTGAGTGCGTGGGCGCATTCGTCTTGTTTGAGTATC
CCGAAAGTGCAGCCCGTTGCTTGCAGGATTATAACAGCCCGAATCTCTTT
GCGCGCAGGTGTTTGCCTCGGCAGCTCTTGTTTCAGGGCTGCCATCGCTT
GGTGGTGCAGCTCGCCCCGGCGCCTGACGACGTGGTTTGGGAGAATCTTC
AGGTCAACAACTGGACTGGCTTTGCGCACCGACAGGTTGTAAACGTGTTG
ACCATCCTACTCTTAGTGATAAGCTTTGTGGTGGCTGTTGGAGTGACGAA
TGCAAAAACACAGCAAAGCCAACTCATCCCCAAATTCAGCCTGTGCGAAA
CAGAAATTCCGGCTCTATTCGTCGGCGAGTTGTCAAATCTCGAGTCAATA
GCCATAGCTTCGGGTCCGCTGTCCTTCATGAGTCCCACTCCGGACGACTG
TCCAACTTGCTATACTCAATGCTTGAGCGCTCTCGCGGGAGTCGGTATTG
AGGCCGATGTAACCAACGCCGGTGTACGCCAAGTACTCATTGTCGTCCAT
AGTGGTAGCTGAGGGACAGGGAAACGAGATGATGTTTGTGCCCGCCGCGC
CTTCCGGCAGTGTCAGCTACAAGGTAATCCATGTCCACGGCTTGACCGCA
AATATCAGTGTCCTTGCTTGCTGGCGGCCCCCCTTCCGGTCAAAAAATGC
CGGTTTGCTATACAGCAACGAACGCCACTGCACTCATGCCGGCGGTGACG
GACAAGAGTACCGGTACCACGCCCATTTGCCAGATGTTTCCATATTTCAC
AGTCACAGCCTGCAACTGCTACGAGCACATGACCCGTTTGGCCAGGTCAT
ACGGTTGGATCTCGAGCACGCTTCTGTCGCTGGCCGACCAGTCGC back to topprotein sequence of jgi.p|Nanoce1779_2|668413 >mRNA_372-protein ID=mRNA_372-protein|Name=jgi.p|Nanoce1779_2|668413|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MPSEDDLERDNEDDNDDDDEHLGGDFMDTPYKPPSVHRALMHREAVIFHK
GHAPLCGKAASRKQIHFSDLGVGSRLHFDFIRVLIISFALLLVLNLPVLV
LYSSGSRIKEEQQDLLGLYALMLGNLDSIDSPSSSDWLMQTGATRQDHFS
TLYPLDVADWKGRPPPANGPPKLPVSDLVHVDGDERYSGKRVAEVTLAKK
NGRELHRYLTHGEKALRLKRLCTYLKKHRPTAGRNPEPDYSRAEHRLAKL
EKDMAAIAHSLRKDARRSKTELECVGAFVLFEYPESAARCLQDYNSPNLF
ARRCLPRQLLFQGCHRLVVQLAPAPDDVVWENLQVNNWTGFAHRQVVNVL
TILLLVISFVVAVGVTNAKTQQSQLIPKFSLCETEIPALFVGELSNLESI
AIASGPLSFMSPTPDDCPTCYTQCLSALAGVGIEADVTNAGVRQVLIVVH
SGS* back to topmRNA from alignment at scaffold_3:922744..925871- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_372 ID=mRNA_372|Name=jgi.p|Nanoce1779_2|668413|organism=Nannochloropsis oceanica|type=mRNA|length=3128bp|location=Sequence derived from alignment at scaffold_3:922744..925871- (Nannochloropsis oceanica)
ATGCCTAGCGAGGACGGTAGGCCCCGCCGCGTTCGTGCTGCTCTTGCGGC
GAGGACGACCCACCATCATAGGTACCAGTGCAACCGTGTGCGACTATGTT
ATGTGTAGGACAGCGATTGTGGTAATAGGTGAAAAAAGAAGGGAGAATGA
GCGAAGGAAGAAGAGTTGTGGATGCATACTATATGACGGGCCCATGGTGT
ATTTTTCCTTGGACATGATTGTCCATTGGAGAGCACTAGTCCAATAAGCA
TGTGCATGACGACCGCAATCAAAATACAGACAAGCATGGGGCTGTTGCTG
TTTAACAGCTCCAGGTGTCTTTCTGGTATTCATCACAAGCTTTTTCGACC
TCCTCTCCCTTCGAATTCATTTTGGGATGCTCGTATTTATGCGACAAGCA
TTTTCCTCGTTTCTAATCTGTGGCACATTTCCTCTCATTAATCCTTAAGC
CAGATGGAGGATGATGTTGGTCCGCCCTTGGCCTAGATCTTCAATCCGAA
GAATCTTTGGCTCCCACGAGGCGACGAAATAATTTCGGTGGCAGACGTCA
CAGGATGCAACACCGACTCTACCGGCGGCATAAGCAGGATAACGCTCCTT
GACGAAGAATTTCCGGACGAACTGCAGTTATTGGGGAATAATGGCAAAAA
GAAGCAAGCCACGACGCCTGCACGACCCTCACCTGTGCGATCTAGCACCC
TTTCCAGCCTGCGACAGGACCAGCCACATGGCCCAAACAACGATCTTTCT
GCCACTGCGGCATTTATAACACAGCCAATTTTTTAAGGAGGGGAAGATAA
AAGACAGAGGGAGAATTTACAGGCCCAGCACGAGCACCAGGGCGCGGCTG
CTCTGGAGAAGTCCTCCAGAGAAGCTGATTCCCCTGAGCCGCCAAGTCCC
ACAATTGACGTCTCAGTGCAACCTGGAGACATTCTACCACCATATATGCC
ACGAAATAGGTGGTCCCGCCTTAGTTTCGATACGATTTAATTCGGAGAGA
TAACGAGCGAGCGCCGGACGAGCATCCTCCACTCAGCGCTAGACGAATCT
CCGACAGAACGTGATGGTATCGTGAGCGATGTGACGCTCACCACTTCCGT
AGCGGCGCCACTATCTGCCACAGTCGCTTCTCTCACTCCAACGTACCCCT
CACTTGCCCTTGCATCGCAGGAGGGCGGTCAACATCCCTTCCGAAACCAC
CATATCAACAACCACAATGACGACAACGACGTTCTACCCAACCCAATCCC
GATTTCGCGGAAGTTATTTGTGAGCTCCTTGGTATTGGCCAGCCCAACCT
TAATCCACCCCCCAAATTGCCCAGATTTGGAACGCGATAACGAGGACGAT
AATGACGACGATGACGAACACTTGGGGGGAGACTTTATGGACACCCCTTA
CAAGCCTCCCTCCGTTCACCGCGCTCTTATGCACCGCGAAGCTGTGATCT
TTCATAAAGGTCACGCTCCGCTCTGCGGGAAAGCTGCTAGTCGCAAGCAA
ATACACTTCAGCGACCTTGGCGTTGGGTCGAGGCTGCATTTTGATTTCAT
CAGAGTCCTCATTATCAGTTTTGCACTCTTGCTTGTGTTGAATCTGCCTG
TCCTTGTTCTCTACTCGTCTGGCTCCCGCATTAAGGAAGAACAGCAGGAC
CTTCTAGGCTTGTATGCTCTAATGCTTGGTAACTTGGATTCCATCGACTC
CCCATCCTCGTCGGACTGGCTTATGGTGCGTCTCTTTGGCCGCCGAGGAC
ATACCATAGGCCGCATACGCCAGCGTGACGCGGCCGTGCTCCTAGCTGCA
ATGGATACATTATCCTGTCTAATATTCGTGGGTATGATCTGGTACTTAAG
CAGACTGGTGCAACACGCCAAGACCACTTTTCCACCCTCTACCCGTTGGA
TGTCGCGGATTGGAAAGGTCGACCACCCCCCGCCAATGGACCACCAAAAC
TACCCGTGTCTGACTTAGTTCATGTAGACGGCGACGAGCGTTACTCTGGA
AAAAGGGTGGCAGAAGTCACCCTGGCTAAAAAGAATGGGCGGGAGCTCCA
CCGCTACTTGACGCACGGTGAAAAAGCCTTGAGACTCAAACGTCTCTGCA
CTTACCTCAAAAAGCATCGCCCCACGGCCGGGCGTAATCCCGAACCAGAT
TATAGCCGTGCTGAACATCGTTTGGCTAAACTGGAGAAAGACATGGCGGC
CATTGCGCACAGCTTGCGAAAAGATGCACGACGGTCCAAGACAGAGCTTG
AGTGCGTGGGCGCATTCGTCTTGTTTGAGTATCCCGAAAGTGCAGCCCGT
TGCTTGCAGGATTATAACAGCCCGAATCTCTTTGCGCGCAGGTGTTTGCC
TCGGCAGCTCTTGTTTCAGGGCTGCCATCGCTTGGTGGTGCAGCTCGCCC
CGGCGCCTGACGACGTGGTTTGGGAGAATCTTCAGGTCAACAACTGGACT
GGCTTTGCGCACCGACAGGTTGTAAACGTGTTGACCATCCTACTCTTAGT
GATAAGCTTTGTGGTGGCTGTTGGAGTGACGAATGCAAAAACACAGCAAA
GCCAACTCATCCCCAAATTCAGCCTGTGCGAAACAGAAATTCCGGCTCTA
TTCGTCGGCGAGTTGTCAAATCTCGAGTCAATAGCCATAGCTTCGGGTCC
GCTGTCCTTCATGAGTCCCACTCCGGACGACTGTCCAACTTGCTATACTC
AATGCTTGAGCGCTCTCGCGGGAGTCGGTATTGAGGCCGATGTAACCAAC
GCCGGTGTACGCCAAGTACTCATTGTCGTCCATAGTGGTAGCTGAGGGAC
AGGGAAACGAGATGATGTTTGTGCCCGCCGCGCCTTCCGGCAGTGTCAGC
TACAAGGTAATCCATGTCCACGGCTTGACCGCAAATATCAGTGTCCTTGC
TTGCTGGCGGCCCCCCTTCCGGTCAAAAAATGCCGGTTTGCTATACAGCA
ACGAACGCCACTGCACTCATGCCGGCGGTGACGGACAAGAGTACCGGTAC
CACGCCCATTTGCCAGATGTTTCCATATTTCACAGTCACAGCCTGCAACT
GCTACGAGCACATGACCCGTTTGGCCAGGTCATACGGTTGGATCTCGAGC
ACGCTTCTGTCGCTGGCCGACCAGTCGC back to topCoding sequence (CDS) from alignment at scaffold_3:922744..925871- >mRNA_372 ID=mRNA_372|Name=jgi.p|Nanoce1779_2|668413|organism=Nannochloropsis oceanica|type=CDS|length=4086bp|location=Sequence derived from alignment at scaffold_3:922744..925871- (Nannochloropsis oceanica)
CAGACTGGTGCAACACGCCAAGACCACTTTTCCACCCTCTACCCGTTGGA
TGTCGCGGATTGGAAAGGTCGACCACCCCCCGCCAATGGACCACCAAAAC
TACCCGTGTCTGACTTAGTTCATGTAGACGGCGACGAGCGTTACTCTGGA
AAAAGGGTGGCAGAAGTCACCCTGGCTAAAAAGAATGGGCGGGAGCTCCA
CCGCTACTTGACGCACGGTGAAAAAGCCTTGAGACTCAAACGTCTCTGCA
CTTACCTCAAAAAGCATCGCCCCACGGCCGGGCGTAATCCCGAACCAGAT
TATAGCCGTGCTGAACATCGTTTGGCTAAACTGGAGAAAGACATGGCGGC
CATTGCGCACAGCTTGCGAAAAGATGCACGACGGTCCAAGACAGAGCTTG
AGTGCGTGGGCGCATTCGTCTTGTTTGAGTATCCCGAAAGTGCAGCCCGT
TGCTTGCAGGATTATAACAGCCCGAATCTCTTTGCGCGCAGGTGTTTGCC
TCGGCAGCTCTTGTTTCAGGGCTGCCATCGCTTGGTGGTGCAGCTCGCCC
CGGCGCCTGACGACGTGGTTTGGGAGAATCTTCAGGTCAACAACTGGACT
GGCTTTGCGCACCGACAGGTTGTAAACGTGTTGACCATCCTACTCTTAGT
GATAAGCTTTGTGGTGGCTGTTGGAGTGACGAATGCAAAAACACAGCAAA
GCCAACTCATCCCCAAATTCAGCCTGTGCGAAACAGAAATTCCGGCTCTA
TTCGTCGGCGAGTTGTCAAATCTCGAGTCAATAGCCATAGCTTCGGGTCC
GCTGTCCTTCATGAGTCCCACTCCGGACGACTGTCCAACTTGCTATACTC
AATGCTTGAGCGCTCTCGCGGGAGTCGGTATTGAGGCCGATGTAACCAAC
GCCGGTGTACGCCAAGTACTCATTGTCGTCCATAGTGGTAGCTGAATTTG
GAACGCGATAACGAGGACGATAATGACGACGATGACGAACACTTGGGGGG
AGACTTTATGGACACCCCTTACAAGCCTCCCTCCGTTCACCGCGCTCTTA
TGCACCGCGAAGCTGTGATCTTTCATAAAGGTCACGCTCCGCTCTGCGGG
AAAGCTGCTAGTCGCAAGCAAATACACTTCAGCGACCTTGGCGTTGGGTC
GAGGCTGCATTTTGATTTCATCAGAGTCCTCATTATCAGTTTTGCACTCT
TGCTTGTGTTGAATCTGCCTGTCCTTGTTCTCTACTCGTCTGGCTCCCGC
ATTAAGGAAGAACAGCAGGACCTTCTAGGCTTGTATGCTCTAATGCTTGG
TAACTTGGATTCCATCGACTCCCCATCCTCGTCGGACTGGCTTATGATGC
CTAGCGAGGACGCAGACTGGTGCAACACGCCAAGACCACTTTTCCACCCT
CTACCCGTTGGATGTCGCGGATTGGAAAGGTCGACCACCCCCCGCCAATG
GACCACCAAAACTACCCGTGTCTGACTTAGTTCATGTAGACGGCGACGAG
CGTTACTCTGGAAAAAGGGTGGCAGAAGTCACCCTGGCTAAAAAGAATGG
GCGGGAGCTCCACCGCTACTTGACGCACGGTGAAAAAGCCTTGAGACTCA
AACGTCTCTGCACTTACCTCAAAAAGCATCGCCCCACGGCCGGGCGTAAT
CCCGAACCAGATTATAGCCGTGCTGAACATCGTTTGGCTAAACTGGAGAA
AGACATGGCGGCCATTGCGCACAGCTTGCGAAAAGATGCACGACGGTCCA
AGACAGAGCTTGAGTGCGTGGGCGCATTCGTCTTGTTTGAGTATCCCGAA
AGTGCAGCCCGTTGCTTGCAGGATTATAACAGCCCGAATCTCTTTGCGCG
CAGGTGTTTGCCTCGGCAGCTCTTGTTTCAGGGCTGCCATCGCTTGGTGG
TGCAGCTCGCCCCGGCGCCTGACGACGTGGTTTGGGAGAATCTTCAGGTC
AACAACTGGACTGGCTTTGCGCACCGACAGGTTGTAAACGTGTTGACCAT
CCTACTCTTAGTGATAAGCTTTGTGGTGGCTGTTGGAGTGACGAATGCAA
AAACACAGCAAAGCCAACTCATCCCCAAATTCAGCCTGTGCGAAACAGAA
ATTCCGGCTCTATTCGTCGGCGAGTTGTCAAATCTCGAGTCAATAGCCAT
AGCTTCGGGTCCGCTGTCCTTCATGAGTCCCACTCCGGACGACTGTCCAA
CTTGCTATACTCAATGCTTGAGCGCTCTCGCGGGAGTCGGTATTGAGGCC
GATGTAACCAACGCCGGTGTACGCCAAGTACTCATTGTCGTCCATAGTGG
TAGCTGAATTTGGAACGCGATAACGAGGACGATAATGACGACGATGACGA
ACACTTGGGGGGAGACTTTATGGACACCCCTTACAAGCCTCCCTCCGTTC
ACCGCGCTCTTATGCACCGCGAAGCTGTGATCTTTCATAAAGGTCACGCT
CCGCTCTGCGGGAAAGCTGCTAGTCGCAAGCAAATACACTTCAGCGACCT
TGGCGTTGGGTCGAGGCTGCATTTTGATTTCATCAGAGTCCTCATTATCA
GTTTTGCACTCTTGCTTGTGTTGAATCTGCCTGTCCTTGTTCTCTACTCG
TCTGGCTCCCGCATTAAGGAAGAACAGCAGGACCTTCTAGGCTTGTATGC
TCTAATGCTTGGTAACTTGGATTCCATCGACTCCCCATCCTCGTCGGACT
GGCTTATGATGCCTAGCGAGGACGCAGACTGGTGCAACACGCCAAGACCA
CTTTTCCACCCTCTACCCGTTGGATGTCGCGGATTGGAAAGGTCGACCAC
CCCCCGCCAATGGACCACCAAAACTACCCGTGTCTGACTTAGTTCATGTA
GACGGCGACGAGCGTTACTCTGGAAAAAGGGTGGCAGAAGTCACCCTGGC
TAAAAAGAATGGGCGGGAGCTCCACCGCTACTTGACGCACGGTGAAAAAG
CCTTGAGACTCAAACGTCTCTGCACTTACCTCAAAAAGCATCGCCCCACG
GCCGGGCGTAATCCCGAACCAGATTATAGCCGTGCTGAACATCGTTTGGC
TAAACTGGAGAAAGACATGGCGGCCATTGCGCACAGCTTGCGAAAAGATG
CACGACGGTCCAAGACAGAGCTTGAGTGCGTGGGCGCATTCGTCTTGTTT
GAGTATCCCGAAAGTGCAGCCCGTTGCTTGCAGGATTATAACAGCCCGAA
TCTCTTTGCGCGCAGGTGTTTGCCTCGGCAGCTCTTGTTTCAGGGCTGCC
ATCGCTTGGTGGTGCAGCTCGCCCCGGCGCCTGACGACGTGGTTTGGGAG
AATCTTCAGGTCAACAACTGGACTGGCTTTGCGCACCGACAGGTTGTAAA
CGTGTTGACCATCCTACTCTTAGTGATAAGCTTTGTGGTGGCTGTTGGAG
TGACGAATGCAAAAACACAGCAAAGCCAACTCATCCCCAAATTCAGCCTG
TGCGAAACAGAAATTCCGGCTCTATTCGTCGGCGAGTTGTCAAATCTCGA
GTCAATAGCCATAGCTTCGGGTCCGCTGTCCTTCATGAGTCCCACTCCGG
ACGACTGTCCAACTTGCTATACTCAATGCTTGAGCGCTCTCGCGGGAGTC
GGTATTGAGGCCGATGTAACCAACGCCGGTGTACGCCAAGTACTCATTGT
CGTCCATAGTGGTAGCTGAATTTGGAACGCGATAACGAGGACGATAATGA
CGACGATGACGAACACTTGGGGGGAGACTTTATGGACACCCCTTACAAGC
CTCCCTCCGTTCACCGCGCTCTTATGCACCGCGAAGCTGTGATCTTTCAT
AAAGGTCACGCTCCGCTCTGCGGGAAAGCTGCTAGTCGCAAGCAAATACA
CTTCAGCGACCTTGGCGTTGGGTCGAGGCTGCATTTTGATTTCATCAGAG
TCCTCATTATCAGTTTTGCACTCTTGCTTGTGTTGAATCTGCCTGTCCTT
GTTCTCTACTCGTCTGGCTCCCGCATTAAGGAAGAACAGCAGGACCTTCT
AGGCTTGTATGCTCTAATGCTTGGTAACTTGGATTCCATCGACTCCCCAT
CCTCGTCGGACTGGCTTATGATGCCTAGCGAGGACG back to top
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