jgi.p|Nanoce1779_2|583174, mRNA_3718 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583174
Unique NamemRNA_3718
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1231
Alignment locationscaffold_6:1063165..1064395 -

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Properties
Property NameValue
TranscriptId583260
TrackFilteredModels2
ProteinId583174
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1063165..1064395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583174gene_3718Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583174mRNA_3718-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3718CDS_3718Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3718 ID=mRNA_3718|Name=jgi.p|Nanoce1779_2|583174|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp
AACAGATACCAGGGGCCACACATTTTGCAGAGGTACCATCGCTTGTACGC
GCGTGCAGAGTTTCATAAGAACTTCTGCTCCAAACCATGCTTTCCTTGTC
GAGCAAAGCGGTCCTGCGCCAGACTGCCGCGACGACGGGCAGGAACTCTA
AAACCCGCTTCGCTTCAATGTGGTGGACTCCAGGTAAGCAATGAGAGACA
CGCGTACTCCCCGCTCATAGCTACGTATATGTCTGCTATAGGTGCGCACT
GATGCATGAGAGATTTTGGGGGGTTGTCCCCTCTCCGCTTCAGGTAAGGA
GCCGCGCGGAACAGCTTCTGTCGACTTCAAGGTAGAGAGAGACCTCAACC
CCCTCCCTGCCAACGCTCCCTCGACGTCCATACCTGTCATGCATGCCTGT
GCGTAGTGGTAGACTGTGTCGTTACAGACCTTGGCAGTTTGCCAGGCGTT
CTCTCCCGCTTTTTGATGATGGTGTACCGAGAACAAAACATGACACCCCC
CTTCGACACATCAATCTGGCTTCATATACTCATGTCACCATATCACCTGC
AACCACTACGATAATATGCTCGCATCAGCCATTCCTTTAACCGTATTATT
CAATTTCCTCTCATCCCTCGCAACCCCTATCTGGATCTCCTCTTTCTCTC
TCCTCCAACCCCCAACCCCCAAGCCTGTGCTTTCGGCTCCACAAACAACA
GCAGTCGCCCTCCCCCCTCCGCGTCTCCCGCCTCCTCTTCATCCTCCAGC
CGCAGAACCCCCGTCTCTACCTCCACCAAGCCCTCTCCCGCATGGCCCCC
TTCCCGCAAAGAGCTCGCGCAGATGTTCGAGGCGGGATACGAAAGTTACG
AAAAAAACGATAAAAAAGGTTTGGGTCGTGGAGCCATGTCTTGGAAGGAA
TGCGAGGACGAAGGGGGGCATCATGATGGGGAGGGAGAGAAAGAGAGGGA
AGGAGGAGCGAAGGGATCGACATCGTTGTCTCCCCATCATGAAGGGTATG
ACGCGGAGGTGGTAGCGAGGCAGAGGCGGGAATTGTTGAAAGCGACAACA
GCAGCAGCAGCAGCACGGACAGGACCAACGTACCTGGAACAAGATGAGTT
GAAGGCACGGAGCGAGGAGAGGGGGAAGGATGGAGTGCCAGCCATGGGGG
GGGCGGGGGTGGTGGAGGGAGGGGAGGAGGAAGACCCGAACGACAATAAG
GGAGGGAGCAGTAGCAGCAGCGGTGGTGGTA
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protein sequence of jgi.p|Nanoce1779_2|583174

>mRNA_3718-protein ID=mRNA_3718-protein|Name=jgi.p|Nanoce1779_2|583174|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MLASAIPLTVLFNFLSSLATPIWISSFSLLQPPTPKPVLSAPQTTAVALP
PPRLPPPLHPPAAEPPSLPPPSPLPHGPLPAKSSRRCSRRDTKVTKKTIK
KVWVVEPCLGRNARTKGGIMMGRERKRGKEERRDRHRCLPIMKGMTRRW*
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mRNA from alignment at scaffold_6:1063165..1064395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3718 ID=mRNA_3718|Name=jgi.p|Nanoce1779_2|583174|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp|location=Sequence derived from alignment at scaffold_6:1063165..1064395- (Nannochloropsis oceanica)
AACAGATACCAGGGGCCACACATTTTGCAGAGGTACCATCGCTTGTACGC
GCGTGCAGAGTTTCATAAGAACTTCTGCTCCAAACCATGCTTTCCTTGTC
GAGCAAAGCGGTCCTGCGCCAGACTGCCGCGACGACGGGCAGGAACTCTA
AAACCCGCTTCGCTTCAATGTGGTGGACTCCAGGTAAGCAATGAGAGACA
CGCGTACTCCCCGCTCATAGCTACGTATATGTCTGCTATAGGTGCGCACT
GATGCATGAGAGATTTTGGGGGGTTGTCCCCTCTCCGCTTCAGGTAAGGA
GCCGCGCGGAACAGCTTCTGTCGACTTCAAGGTAGAGAGAGACCTCAACC
CCCTCCCTGCCAACGCTCCCTCGACGTCCATACCTGTCATGCATGCCTGT
GCGTAGTGGTAGACTGTGTCGTTACAGACCTTGGCAGTTTGCCAGGCGTT
CTCTCCCGCTTTTTGATGATGGTGTACCGAGAACAAAACATGACACCCCC
CTTCGACACATCAATCTGGCTTCATATACTCATGTCACCATATCACCTGC
AACCACTACGATAATATGCTCGCATCAGCCATTCCTTTAACCGTATTATT
CAATTTCCTCTCATCCCTCGCAACCCCTATCTGGATCTCCTCTTTCTCTC
TCCTCCAACCCCCAACCCCCAAGCCTGTGCTTTCGGCTCCACAAACAACA
GCAGTCGCCCTCCCCCCTCCGCGTCTCCCGCCTCCTCTTCATCCTCCAGC
CGCAGAACCCCCGTCTCTACCTCCACCAAGCCCTCTCCCGCATGGCCCCC
TTCCCGCAAAGAGCTCGCGCAGATGTTCGAGGCGGGATACGAAAGTTACG
AAAAAAACGATAAAAAAGGTTTGGGTCGTGGAGCCATGTCTTGGAAGGAA
TGCGAGGACGAAGGGGGGCATCATGATGGGGAGGGAGAGAAAGAGAGGGA
AGGAGGAGCGAAGGGATCGACATCGTTGTCTCCCCATCATGAAGGGTATG
ACGCGGAGGTGGTAGCGAGGCAGAGGCGGGAATTGTTGAAAGCGACAACA
GCAGCAGCAGCAGCACGGACAGGACCAACGTACCTGGAACAAGATGAGTT
GAAGGCACGGAGCGAGGAGAGGGGGAAGGATGGAGTGCCAGCCATGGGGG
GGGCGGGGGTGGTGGAGGGAGGGGAGGAGGAAGACCCGAACGACAATAAG
GGAGGGAGCAGTAGCAGCAGCGGTGGTGGTA
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Coding sequence (CDS) from alignment at scaffold_6:1063165..1064395-

>mRNA_3718 ID=mRNA_3718|Name=jgi.p|Nanoce1779_2|583174|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_6:1063165..1064395- (Nannochloropsis oceanica)
ATGCTCGCATCAGCCATTCCTTTAACCGTATTATTCAATTTCCTCTCATC
CCTCGCAACCCCTATCTGGATCTCCTCTTTCTCTCTCCTCCAACCCCCAA
CCCCCAAGCCTGTGCTTTCGGCTCCACAAACAACAGCAGTCGCCCTCCCC
CCTCCGCGTCTCCCGCCTCCTCTTCATCCTCCAGCCGCAGAACCCCCGTC
TCTACCTCCACCAAGCCCTCTCCCGCATGGCCCCCTTCCCGCAAAGAGCT
CGCGCAGATGTTCGAGGCGGGATACGAAAGTTACGAAAAAAACGATAAAA
AAGGTTTGGGTCGTGGAGCCATGTCTTGGAAGGAATGCGAGGACGAAGGG
GGGCATCATGATGGGGAGGGAGAGAAAGAGAGGGAAGGAGGAGCGAAGGG
ATCGACATCGTTGTCTCCCCATCATGAAGGGTATGACGCGGAGGTGGTAG
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Synonyms
Publications