jgi.p|Nanoce1779_2|583173, mRNA_3717 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583173
Unique NamemRNA_3717
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1308
Alignment locationscaffold_6:1061902..1063209 -

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Properties
Property NameValue
TranscriptId583259
TrackFilteredModels2
ProteinId583173
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1061902..1063209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583173gene_3717Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583173mRNA_3717-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3717CDS_3717Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3717 ID=mRNA_3717|Name=jgi.p|Nanoce1779_2|583173|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
CGAACGACAATAAGGGAGGGAGCAGTAGCAGCAGCGGTGGTGGTATTGTG
AGTGGTGGAGGTGGAGGTGGAGGTGGAGGAGGAGGAGAAGGAGGCAAAGT
GGCGGCTAACAGCGGTAGCAGCAGCAGTAGCAGCGATAGCAACACGAGCT
TGGAGAACTGGACGTGGGCGAAGCCCTCCCGTCTTTCTCAGGAGCAGGAG
GAGCAGCAGAGCAACAGCACCAGGAGTGGCAGCAGAACCGCGAGCTCGTC
GACGAAAAGTAGGTTGGGACATATCCCCGTGGTGCTCCGGACGTTGTTGA
CTCCCGCGGAGGTGGTGCAGAGTCTGACTGAGTTAGGGGGAGGGGGAGTG
ACGAGCGTCGACATCCGGGGAAAGGGGAATTTCGACGCAGAAGCGATGAT
CTTTGCGTCGGGTAGGAGTGGAGGTCACTTGAGACGGATGGCCGATGCGC
TGGTGGGTGCGCTGAAGGCACGGGGAGTGGAGGAGGAAAGGGCTCCGGGA
GTGACGGGTGCAGAGGGCTACGAGTGCGATGACTGGATGATTGTGGATGG
AGGCAATGTGATTGTGCATCTGATGGAGCCGAGCCAACGCAAGGCCTTGG
AGCTTGAACAGTTCTGGGGCGGGGCTGCGGAGGGAATGGAGGAGGCGAAG
GGGGGGAGCGTTGGGGAGGTGGTGATGCCGGTGGTGGCAGGGACATCGGA
GGCGGCTTGGAATCAGGCGCATGACGAGTTGTTGGAGCGGTTTCCGTGTG
ATGAGGGATATGCACCTGAAAACGAGGGGCACTCAGGGAGAGAGAGGGAG
TTGAGGAGGGTCTTGGGGGGGCAAAGGGGGTTCACAGGACGGAGGGCGCG
GAGGAGGGCGTAGGTTGGCGCTGGGAGGTAGGGAGGGAAGGAAAGAAGGA
GGGAAGGAGGAGGTGATTTGTGTACAGGAATGGGTTGTATGATTTTATTT
TCATTTTTAAATCTTGATTTTCTTTTATGCCTAGCTACACATCTGCCAAT
TTCGGTTTGCGTTGCCCCTTTGTGGAAAATTTCGTAATATCACCCTAAGA
AAGAGACTCCAGAGGTAGAGGTAGCAGTAGCAGCAGCAGCAGCAGTACCA
GCGACAATTGTCGCCCGTCGCCGGTGGCAGCGGGATTGGAAAAAGAAAAG
GAGAAAGGGGAAAGAAGAGAAGAAAGGAGCGGATTGAGTTCCTTGCACAC
AGATAAAAATTACAAAGGGCTGAAACGGTAAAGAGACAAAGAGAGAGCCA
TGAACATTAAGAGGGGAATATATATATATATATATATATATATATATATA
TATGTATA
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protein sequence of jgi.p|Nanoce1779_2|583173

>mRNA_3717-protein ID=mRNA_3717-protein|Name=jgi.p|Nanoce1779_2|583173|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MIFASGRSGGHLRRMADALVGALKARGVEEERAPGVTGAEGYECDDWMIV
DGGNVIVHLMEPSQRKALELEQFWGGAAEGMEEAKGGSVGEVVMPVVAGT
SEAAWNQAHDELLERFPCDEGYAPENEGHSGRERELRRVLGGQRGFTGRR
ARRRA*
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mRNA from alignment at scaffold_6:1061902..1063209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3717 ID=mRNA_3717|Name=jgi.p|Nanoce1779_2|583173|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at scaffold_6:1061902..1063209- (Nannochloropsis oceanica)
CGAACGACAATAAGGGAGGGAGCAGTAGCAGCAGCGGTGGTGGTATTGTG
AGTGGTGGAGGTGGAGGTGGAGGTGGAGGAGGAGGAGAAGGAGGCAAAGT
GGCGGCTAACAGCGGTAGCAGCAGCAGTAGCAGCGATAGCAACACGAGCT
TGGAGAACTGGACGTGGGCGAAGCCCTCCCGTCTTTCTCAGGAGCAGGAG
GAGCAGCAGAGCAACAGCACCAGGAGTGGCAGCAGAACCGCGAGCTCGTC
GACGAAAAGTAGGTTGGGACATATCCCCGTGGTGCTCCGGACGTTGTTGA
CTCCCGCGGAGGTGGTGCAGAGTCTGACTGAGTTAGGGGGAGGGGGAGTG
ACGAGCGTCGACATCCGGGGAAAGGGGAATTTCGACGCAGAAGCGATGAT
CTTTGCGTCGGGTAGGAGTGGAGGTCACTTGAGACGGATGGCCGATGCGC
TGGTGGGTGCGCTGAAGGCACGGGGAGTGGAGGAGGAAAGGGCTCCGGGA
GTGACGGGTGCAGAGGGCTACGAGTGCGATGACTGGATGATTGTGGATGG
AGGCAATGTGATTGTGCATCTGATGGAGCCGAGCCAACGCAAGGCCTTGG
AGCTTGAACAGTTCTGGGGCGGGGCTGCGGAGGGAATGGAGGAGGCGAAG
GGGGGGAGCGTTGGGGAGGTGGTGATGCCGGTGGTGGCAGGGACATCGGA
GGCGGCTTGGAATCAGGCGCATGACGAGTTGTTGGAGCGGTTTCCGTGTG
ATGAGGGATATGCACCTGAAAACGAGGGGCACTCAGGGAGAGAGAGGGAG
TTGAGGAGGGTCTTGGGGGGGCAAAGGGGGTTCACAGGACGGAGGGCGCG
GAGGAGGGCGTAGGTTGGCGCTGGGAGGTAGGGAGGGAAGGAAAGAAGGA
GGGAAGGAGGAGGTGATTTGTGTACAGGAATGGGTTGTATGATTTTATTT
TCATTTTTAAATCTTGATTTTCTTTTATGCCTAGCTACACATCTGCCAAT
TTCGGTTTGCGTTGCCCCTTTGTGGAAAATTTCGTAATATCACCCTAAGA
AAGAGACTCCAGAGGTAGAGGTAGCAGTAGCAGCAGCAGCAGCAGTACCA
GCGACAATTGTCGCCCGTCGCCGGTGGCAGCGGGATTGGAAAAAGAAAAG
GAGAAAGGGGAAAGAAGAGAAGAAAGGAGCGGATTGAGTTCCTTGCACAC
AGATAAAAATTACAAAGGGCTGAAACGGTAAAGAGACAAAGAGAGAGCCA
TGAACATTAAGAGGGGAATATATATATATATATATATATATATATATATA
TATGTATA
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Coding sequence (CDS) from alignment at scaffold_6:1061902..1063209-

>mRNA_3717 ID=mRNA_3717|Name=jgi.p|Nanoce1779_2|583173|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_6:1061902..1063209- (Nannochloropsis oceanica)
ATGATCTTTGCGTCGGGTAGGAGTGGAGGTCACTTGAGACGGATGGCCGA
TGCGCTGGTGGGTGCGCTGAAGGCACGGGGAGTGGAGGAGGAAAGGGCTC
CGGGAGTGACGGGTGCAGAGGGCTACGAGTGCGATGACTGGATGATTGTG
GATGGAGGCAATGTGATTGTGCATCTGATGGAGCCGAGCCAACGCAAGGC
CTTGGAGCTTGAACAGTTCTGGGGCGGGGCTGCGGAGGGAATGGAGGAGG
CGAAGGGGGGGAGCGTTGGGGAGGTGGTGATGCCGGTGGTGGCAGGGACA
TCGGAGGCGGCTTGGAATCAGGCGCATGACGAGTTGTTGGAGCGGTTTCC
GTGTGATGAGGGATATGCACCTGAAAACGAGGGGCACTCAGGGAGAGAGA
GGGAGTTGAGGAGGGTCTTGGGGGGGCAAAGGGGGTTCACAGGACGGAGG
GCGCGGAGGAGGGCGTAG
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Synonyms
Publications