jgi.p|Nanoce1779_2|583169, mRNA_3716 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583169
Unique NamemRNA_3716
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1010
Alignment locationscaffold_6:1059601..1060610 -

Link to JBrowse

Properties
Property NameValue
TranscriptId583255
TrackFilteredModels2
ProteinId583169
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1059601..1060610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583169gene_3716Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583169mRNA_3716-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3716CDS_3716Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3716 ID=mRNA_3716|Name=jgi.p|Nanoce1779_2|583169|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGCGGCTGCTTCTCCCG
CTGCTGCAGCTGCTGCTGCTGCAGCTGCTGCTGTTGCCGCGGCAGACGAC
TCATTCTGCTCTTGAATGTCGTCCTCTTCCCCATCTTCTTCATGGACGCC
GCTTCCCTTGGAAGCAGGGGTCTGTAGAGTCAGACCATCCTCCTTATTCA
CAGCGCCCGCAACAGCACTATTACTTCCCCCTAGAAGAGAACCCAATCCT
CCCTTGCCACCTAAGCTAAAAGGAGACGACGACATCACCTCCCGCTCTCC
TCCTCCACCTTCCCTTCCTCGACGAAGGCTCGTGCCGCTACTACCATTCT
TAGTGTTGTTCCATTTCCAAGACCCCTCGACGGGCGCGCTCCGAGGAGTG
GCATACGTCATTTTCTGCCTTCGTTGCTGCTGTTGCTGCAAGCGACTGCC
TTCCGCGATGGCCGAGTCTGACGAGGCTAATGGATCGTCCTTGCTCCCGG
ACTGTCCTCGCCGTGGCCCCGCCCCTCCTTCCCTTCGATCTTGCCTCCCT
CTACCCTCCTTCCCTCCCTCCCTCCCTCCTCCCCCACTTGCCCCCGACAA
CAAACAAGGAGCGTTCGCCGGCGGGGCCTGCCTGGGTGCCACCACTCGTG
CCTTATCGAGAAGAGACACAATTTGAATATTCAATCCTCGATTCGACCGA
CATACAAAATGCGGTACGGCCACCACCACAGCCATCACCACAGCCACTGC
TGCCATTCCTCCCATCAAAAACAATTTGTCTTCCGACGTCCCCTCCAGCT
GCAGCATGTCCAAATACTTCACCATCCACTCATGGTTACTATTGCCACAC
ATCATCTCTCTCCTCCCTCCATTTCCTCCTCCCCACCCCCACATCCCTCT
TCCTTTCTCACCACTAGCAAATCTGCCTCCCTCCCTCCCTCCCTCCATAG
TTAGCAGCCTCGATGCTAAGGCCTCTACGACCGTAACGACGACAGCAGCA
AGCATGTGCG
back to top

protein sequence of jgi.p|Nanoce1779_2|583169

>mRNA_3716-protein ID=mRNA_3716-protein|Name=jgi.p|Nanoce1779_2|583169|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MSSSSPSSSWTPLPLEAGVCRVRPSSLFTAPATALLLPPRREPNPPLPPK
LKGDDDITSRSPPPPSLPRRRLVPLLPFLVLFHFQDPSTGALRGVAYVIF
CLRCCCCCKRLPSAMAESDEANGSSLLPDCPRRGPAPPSLRSCLPLPSFP
PSLPPPPLAPDNKQGAFAGGACLGATTRALSRRDTI*
back to top

mRNA from alignment at scaffold_6:1059601..1060610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3716 ID=mRNA_3716|Name=jgi.p|Nanoce1779_2|583169|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp|location=Sequence derived from alignment at scaffold_6:1059601..1060610- (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGCGGCTGCTTCTCCCG
CTGCTGCAGCTGCTGCTGCTGCAGCTGCTGCTGTTGCCGCGGCAGACGAC
TCATTCTGCTCTTGAATGTCGTCCTCTTCCCCATCTTCTTCATGGACGCC
GCTTCCCTTGGAAGCAGGGGTCTGTAGAGTCAGACCATCCTCCTTATTCA
CAGCGCCCGCAACAGCACTATTACTTCCCCCTAGAAGAGAACCCAATCCT
CCCTTGCCACCTAAGCTAAAAGGAGACGACGACATCACCTCCCGCTCTCC
TCCTCCACCTTCCCTTCCTCGACGAAGGCTCGTGCCGCTACTACCATTCT
TAGTGTTGTTCCATTTCCAAGACCCCTCGACGGGCGCGCTCCGAGGAGTG
GCATACGTCATTTTCTGCCTTCGTTGCTGCTGTTGCTGCAAGCGACTGCC
TTCCGCGATGGCCGAGTCTGACGAGGCTAATGGATCGTCCTTGCTCCCGG
ACTGTCCTCGCCGTGGCCCCGCCCCTCCTTCCCTTCGATCTTGCCTCCCT
CTACCCTCCTTCCCTCCCTCCCTCCCTCCTCCCCCACTTGCCCCCGACAA
CAAACAAGGAGCGTTCGCCGGCGGGGCCTGCCTGGGTGCCACCACTCGTG
CCTTATCGAGAAGAGACACAATTTGAATATTCAATCCTCGATTCGACCGA
CATACAAAATGCGGTACGGCCACCACCACAGCCATCACCACAGCCACTGC
TGCCATTCCTCCCATCAAAAACAATTTGTCTTCCGACGTCCCCTCCAGCT
GCAGCATGTCCAAATACTTCACCATCCACTCATGGTTACTATTGCCACAC
ATCATCTCTCTCCTCCCTCCATTTCCTCCTCCCCACCCCCACATCCCTCT
TCCTTTCTCACCACTAGCAAATCTGCCTCCCTCCCTCCCTCCCTCCATAG
TTAGCAGCCTCGATGCTAAGGCCTCTACGACCGTAACGACGACAGCAGCA
AGCATGTGCG
back to top

Coding sequence (CDS) from alignment at scaffold_6:1059601..1060610-

>mRNA_3716 ID=mRNA_3716|Name=jgi.p|Nanoce1779_2|583169|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_6:1059601..1060610- (Nannochloropsis oceanica)
ATGTCGTCCTCTTCCCCATCTTCTTCATGGACGCCGCTTCCCTTGGAAGC
AGGGGTCTGTAGAGTCAGACCATCCTCCTTATTCACAGCGCCCGCAACAG
CACTATTACTTCCCCCTAGAAGAGAACCCAATCCTCCCTTGCCACCTAAG
CTAAAAGGAGACGACGACATCACCTCCCGCTCTCCTCCTCCACCTTCCCT
TCCTCGACGAAGGCTCGTGCCGCTACTACCATTCTTAGTGTTGTTCCATT
TCCAAGACCCCTCGACGGGCGCGCTCCGAGGAGTGGCATACGTCATTTTC
TGCCTTCGTTGCTGCTGTTGCTGCAAGCGACTGCCTTCCGCGATGGCCGA
GTCTGACGAGGCTAATGGATCGTCCTTGCTCCCGGACTGTCCTCGCCGTG
GCCCCGCCCCTCCTTCCCTTCGATCTTGCCTCCCTCTACCCTCCTTCCCT
CCCTCCCTCCCTCCTCCCCCACTTGCCCCCGACAACAAACAAGGAGCGTT
CGCCGGCGGGGCCTGCCTGGGTGCCACCACTCGTGCCTTATCGAGAAGAG
ACACAATTTGA
back to top
Synonyms
Publications