jgi.p|Nanoce1779_2|583168, mRNA_3715 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583168
Unique NamemRNA_3715
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1854
Alignment locationscaffold_6:1057901..1059754 -

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Properties
Property NameValue
TranscriptId583254
TrackFilteredModels2
ProteinId583168
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1057901..1059754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583168gene_3715Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583168mRNA_3715-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3715CDS_3715Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3715 ID=mRNA_3715|Name=jgi.p|Nanoce1779_2|583168|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp
TCTCTCCTCCCTCCATTTCCTCCTCCCCACCCCCACATCCCTCTTCCTTT
CTCACCACTAGCAAATCTGCCTCCCTCCCTCCCTCCCTCCATAGTTAGCA
GCCTCGATGCTAAGGCCTCTACGACCGTAACGACGACAGCAGCAAGCATG
TGCGCGCCTAGGACGAACCTCCCACACCACTGCTCATCCAGTACAACACA
CTCGAGGTTAACCAACGCCAGATACACTTTTAATTTACTGGTGCTGAGGG
AATGGAGGGCGAGGGAGAGGGAGAGGTGGGTCAGACCAAGGCCCACAGCC
AGCGCCCACAAAGACAGGTCTTCCAGAGCAACGACTGCTTCGGGGTAGTG
AAGGAGGGCATGGTAGAGGGAGAGGTACATCCCCGAGGACATGAGCAGGG
GCAGGAGGGGGTCAAGAAAGCGAAGGAGGAGGGAGGGGGGGGGGATGAGG
TGCGGGAGGAGGAGGGCCGATAGGCTGTTGGATAGGGGGGGGCGGGTGAG
GGAGGAGATGGTGGTAGAGGTGGAGAAGGAGGATATACTGCTTGCGGACG
AAGAAGAGAAAGAGGAAGAGATCGAGCGTTTGCGTCCCCAGGAGGAGGAG
GAGGAAGGGGAGGAAGAGGAGGTGGTGATACAGGAAAGGGCATTCTGGGT
CGCGGCTGAGGAGAAGGAAGAAGGCAAGAAGCACGCTAAGGGAAGCAAAG
CCTCTTTTAAGTGCTGGGGATATCGAATCACAGAGACGGATGCCGCCGGC
CTTGTGATCGAAAACTCTTCATCCAACCGTTTCCCCCCTCCACGTGTCCT
CGTCTTCCCTCCCGCCCTGCTGGTGCGGGGTAGATATGCCAGGCATTGCA
TCAAATTAATTGTTCTCGTAAGTGCAGCCCGAGGCATAATCCGGACATCG
ACAGTGTACCTGTGCAGCTTCCCTTTCTTCAAGCCAGTCCACCACAGGGT
TAATTCTTTGGTCTCGGAGGAGGTGATGAAGCGGACTTCGCGCTCTTCTC
CGGGTAGGAAAGAAGAGTGGAGAATACGGTCGAGGTAGAAGGAGGGAAAG
AGGGCTTGGTCTTTGTCTCCCAACCCTTTGATGCTGAAGGTGCCGGAGGA
GGAAGGGAGGAAGCGAATAGTGACCAGACGGTAGGTGGGAACAGGAGGGA
GGGAGGGCGTCGAGGAGGTAGGGAGGGAGGTGGTGTCCGGCATGCGCAGG
AGAATGCGATGTTGGAGGGCAAAGGGGGAAATGAGGGCTAGCGTCAAGTC
GGGGAGGGTGAAATGGAGGGAGCGATGGGCGGCGAGGGTCTCGAGCAGGT
ACCGAGAGAGGGCACTTCGGGCGAAGTGGAGGCAGGGGGACAGATTCTTG
TTTTCAGTTTGAGAGGAAAAGGTGGTGGGGGACAGGAGGACGGTAAGGTC
GACAGCGCCTTGGGTGAGGGAGGGGCCTACAACAAAGGCGAGGAGGGGGA
GCTCGGAGAGGCCAAGGTCGTCGGAGGGGGAGGGAGGTTTCTTGGTGGTG
GTGGTGGCGGAGGAGGTGGCGGAGGAAGGGGTGGAGGAAGAGGGGTTGAG
GCCAAGGAGAGGAAAGTGATGGGGTTTTTTGATGGAGGTGGCGAGGTAAT
AAACAAAATCACCGACAGGTGCGCCAGAAGTGCTGGTGCTGGTGGTGCTG
GTGCCGGGTGAGTAGTAGTATCGACCTGTGCGTTGCGCGAGGATGAATTC
CTTGGCAGACTGCTTCTTTTCGGACCAGACCATCTTGACGACGCTGCTAT
CAGGGCCTACACCGACGTCACCACCGTTGTAAGGATTGCCACTGATGCTC
CCGATGGTGCTATGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGT
GCTG
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protein sequence of jgi.p|Nanoce1779_2|583168

>mRNA_3715-protein ID=mRNA_3715-protein|Name=jgi.p|Nanoce1779_2|583168|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MSRGRRGSRKRRRREGGGMRCGRRRADRLLDRGGRVREEMVVEVEKEDIL
LADEEEKEEEIERLRPQEEEEEGEEEEVVIQERAFWVAAEEKEEGKKHAK
GSKASFKCWGYRITETDAAGLVIENSSSNRFPPPRVLVFPPALLVRGRYA
RHCIKLIVLVSAARGIIRTSTVYLCSFPFFKPVHHRVNSLVSEEVMKRTS
RSSPGRKEEWRIRSR*
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mRNA from alignment at scaffold_6:1057901..1059754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3715 ID=mRNA_3715|Name=jgi.p|Nanoce1779_2|583168|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp|location=Sequence derived from alignment at scaffold_6:1057901..1059754- (Nannochloropsis oceanica)
TCTCTCCTCCCTCCATTTCCTCCTCCCCACCCCCACATCCCTCTTCCTTT
CTCACCACTAGCAAATCTGCCTCCCTCCCTCCCTCCCTCCATAGTTAGCA
GCCTCGATGCTAAGGCCTCTACGACCGTAACGACGACAGCAGCAAGCATG
TGCGCGCCTAGGACGAACCTCCCACACCACTGCTCATCCAGTACAACACA
CTCGAGGTTAACCAACGCCAGATACACTTTTAATTTACTGGTGCTGAGGG
AATGGAGGGCGAGGGAGAGGGAGAGGTGGGTCAGACCAAGGCCCACAGCC
AGCGCCCACAAAGACAGGTCTTCCAGAGCAACGACTGCTTCGGGGTAGTG
AAGGAGGGCATGGTAGAGGGAGAGGTACATCCCCGAGGACATGAGCAGGG
GCAGGAGGGGGTCAAGAAAGCGAAGGAGGAGGGAGGGGGGGGGGATGAGG
TGCGGGAGGAGGAGGGCCGATAGGCTGTTGGATAGGGGGGGGCGGGTGAG
GGAGGAGATGGTGGTAGAGGTGGAGAAGGAGGATATACTGCTTGCGGACG
AAGAAGAGAAAGAGGAAGAGATCGAGCGTTTGCGTCCCCAGGAGGAGGAG
GAGGAAGGGGAGGAAGAGGAGGTGGTGATACAGGAAAGGGCATTCTGGGT
CGCGGCTGAGGAGAAGGAAGAAGGCAAGAAGCACGCTAAGGGAAGCAAAG
CCTCTTTTAAGTGCTGGGGATATCGAATCACAGAGACGGATGCCGCCGGC
CTTGTGATCGAAAACTCTTCATCCAACCGTTTCCCCCCTCCACGTGTCCT
CGTCTTCCCTCCCGCCCTGCTGGTGCGGGGTAGATATGCCAGGCATTGCA
TCAAATTAATTGTTCTCGTAAGTGCAGCCCGAGGCATAATCCGGACATCG
ACAGTGTACCTGTGCAGCTTCCCTTTCTTCAAGCCAGTCCACCACAGGGT
TAATTCTTTGGTCTCGGAGGAGGTGATGAAGCGGACTTCGCGCTCTTCTC
CGGGTAGGAAAGAAGAGTGGAGAATACGGTCGAGGTAGAAGGAGGGAAAG
AGGGCTTGGTCTTTGTCTCCCAACCCTTTGATGCTGAAGGTGCCGGAGGA
GGAAGGGAGGAAGCGAATAGTGACCAGACGGTAGGTGGGAACAGGAGGGA
GGGAGGGCGTCGAGGAGGTAGGGAGGGAGGTGGTGTCCGGCATGCGCAGG
AGAATGCGATGTTGGAGGGCAAAGGGGGAAATGAGGGCTAGCGTCAAGTC
GGGGAGGGTGAAATGGAGGGAGCGATGGGCGGCGAGGGTCTCGAGCAGGT
ACCGAGAGAGGGCACTTCGGGCGAAGTGGAGGCAGGGGGACAGATTCTTG
TTTTCAGTTTGAGAGGAAAAGGTGGTGGGGGACAGGAGGACGGTAAGGTC
GACAGCGCCTTGGGTGAGGGAGGGGCCTACAACAAAGGCGAGGAGGGGGA
GCTCGGAGAGGCCAAGGTCGTCGGAGGGGGAGGGAGGTTTCTTGGTGGTG
GTGGTGGCGGAGGAGGTGGCGGAGGAAGGGGTGGAGGAAGAGGGGTTGAG
GCCAAGGAGAGGAAAGTGATGGGGTTTTTTGATGGAGGTGGCGAGGTAAT
AAACAAAATCACCGACAGGTGCGCCAGAAGTGCTGGTGCTGGTGGTGCTG
GTGCCGGGTGAGTAGTAGTATCGACCTGTGCGTTGCGCGAGGATGAATTC
CTTGGCAGACTGCTTCTTTTCGGACCAGACCATCTTGACGACGCTGCTAT
CAGGGCCTACACCGACGTCACCACCGTTGTAAGGATTGCCACTGATGCTC
CCGATGGTGCTATGGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGT
GCTG
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Coding sequence (CDS) from alignment at scaffold_6:1057901..1059754-

>mRNA_3715 ID=mRNA_3715|Name=jgi.p|Nanoce1779_2|583168|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_6:1057901..1059754- (Nannochloropsis oceanica)
ATGAGCAGGGGCAGGAGGGGGTCAAGAAAGCGAAGGAGGAGGGAGGGGGG
GGGGATGAGGTGCGGGAGGAGGAGGGCCGATAGGCTGTTGGATAGGGGGG
GGCGGGTGAGGGAGGAGATGGTGGTAGAGGTGGAGAAGGAGGATATACTG
CTTGCGGACGAAGAAGAGAAAGAGGAAGAGATCGAGCGTTTGCGTCCCCA
GGAGGAGGAGGAGGAAGGGGAGGAAGAGGAGGTGGTGATACAGGAAAGGG
CATTCTGGGTCGCGGCTGAGGAGAAGGAAGAAGGCAAGAAGCACGCTAAG
GGAAGCAAAGCCTCTTTTAAGTGCTGGGGATATCGAATCACAGAGACGGA
TGCCGCCGGCCTTGTGATCGAAAACTCTTCATCCAACCGTTTCCCCCCTC
CACGTGTCCTCGTCTTCCCTCCCGCCCTGCTGGTGCGGGGTAGATATGCC
AGGCATTGCATCAAATTAATTGTTCTCGTAAGTGCAGCCCGAGGCATAAT
CCGGACATCGACAGTGTACCTGTGCAGCTTCCCTTTCTTCAAGCCAGTCC
ACCACAGGGTTAATTCTTTGGTCTCGGAGGAGGTGATGAAGCGGACTTCG
CGCTCTTCTCCGGGTAGGAAAGAAGAGTGGAGAATACGGTCGAGGTAG
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Synonyms
Publications