jgi.p|Nanoce1779_2|564595, mRNA_3714 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564595
Unique NamemRNA_3714
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length387
Alignment locationscaffold_6:1058094..1058480 -

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Properties
Property NameValue
TranscriptId564681
TrackFilteredModels2
ProteinId564595
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1058094..1058480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564595gene_3714Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3714CDS_3714Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564595mRNA_3714-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3714 ID=mRNA_3714|Name=jgi.p|Nanoce1779_2|564595|organism=Nannochloropsis oceanica|type=mRNA|length=387bp
ATGGGCGGCGAGGGTCTCGAGCAGGTACCGAGAGAGGGCACTTCGGGCGA
AGTGGAGGCAGGGGGACAGATTCTTGTTTTCAGTTTGAGAGGAAAAGGTG
GTGGGGGACAGGAGGACGGTAAGGTCGACAGCGCCTTGGGTGAGGGAGGG
GCCTACAACAAAGGCGAGGAGGGGGAGCTCGGAGAGGCCAAGGTCGTCGG
AGGGGGAGGGAGGTTTCTTGGTGGTGGTGGTGGCGGAGGAGGTGGCGGAG
GAAGGGGTGGAGGAAGAGGGGTTGAGGCCAAGGAGAGGAAAGTGATGGGG
TTTTTTGATGGAGGTGGCGAGGTAATAAACAAAATCACCGACAGGTGCGC
CAGAAGTGCTGGTGCTGGTGGTGCTGGTGCCGGGTGA
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protein sequence of jgi.p|Nanoce1779_2|564595

>mRNA_3714-protein ID=mRNA_3714-protein|Name=jgi.p|Nanoce1779_2|564595|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MGGEGLEQVPREGTSGEVEAGGQILVFSLRGKGGGGQEDGKVDSALGEGG
AYNKGEEGELGEAKVVGGGGRFLGGGGGGGGGGGRGGGRGVEAKERKVMG
FFDGGGEVINKITDRCARSAGAGGAGAG*
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mRNA from alignment at scaffold_6:1058094..1058480-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3714 ID=mRNA_3714|Name=jgi.p|Nanoce1779_2|564595|organism=Nannochloropsis oceanica|type=mRNA|length=387bp|location=Sequence derived from alignment at scaffold_6:1058094..1058480- (Nannochloropsis oceanica)
ATGGGCGGCGAGGGTCTCGAGCAGGTACCGAGAGAGGGCACTTCGGGCGA
AGTGGAGGCAGGGGGACAGATTCTTGTTTTCAGTTTGAGAGGAAAAGGTG
GTGGGGGACAGGAGGACGGTAAGGTCGACAGCGCCTTGGGTGAGGGAGGG
GCCTACAACAAAGGCGAGGAGGGGGAGCTCGGAGAGGCCAAGGTCGTCGG
AGGGGGAGGGAGGTTTCTTGGTGGTGGTGGTGGCGGAGGAGGTGGCGGAG
GAAGGGGTGGAGGAAGAGGGGTTGAGGCCAAGGAGAGGAAAGTGATGGGG
TTTTTTGATGGAGGTGGCGAGGTAATAAACAAAATCACCGACAGGTGCGC
CAGAAGTGCTGGTGCTGGTGGTGCTGGTGCCGGGTGA
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Coding sequence (CDS) from alignment at scaffold_6:1058094..1058480-

>mRNA_3714 ID=mRNA_3714|Name=jgi.p|Nanoce1779_2|564595|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_6:1058094..1058480- (Nannochloropsis oceanica)
ATGGGCGGCGAGGGTCTCGAGCAGGTACCGAGAGAGGGCACTTCGGGCGA
AGTGGAGGCAGGGGGACAGATTCTTGTTTTCAGTTTGAGAGGAAAAGGTG
GTGGGGGACAGGAGGACGGTAAGGTCGACAGCGCCTTGGGTGAGGGAGGG
GCCTACAACAAAGGCGAGGAGGGGGAGCTCGGAGAGGCCAAGGTCGTCGG
AGGGGGAGGGAGGTTTCTTGGTGGTGGTGGTGGCGGAGGAGGTGGCGGAG
GAAGGGGTGGAGGAAGAGGGGTTGAGGCCAAGGAGAGGAAAGTGATGGGG
TTTTTTGATGGAGGTGGCGAGGTAATAAACAAAATCACCGACAGGTGCGC
CAGAAGTGCTGGTGCTGGTGGTGCTGGTGCCGGGTGA
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Synonyms
Publications