jgi.p|Nanoce1779_2|629082, mRNA_3713 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629082
Unique NamemRNA_3713
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1674
Alignment locationscaffold_6:1055440..1057113 -

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Properties
Property NameValue
TranscriptId629168
TrackFilteredModels2
ProteinId629082
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1055440..1057113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629082gene_3713Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629082mRNA_3713-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3713CDS_3713Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3713 ID=mRNA_3713|Name=jgi.p|Nanoce1779_2|629082|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
CTGATTGTGATGGCTTCCAGGCAGGCCCGTAGCAGTTCCTTCGGAAGGCA
GGCCCTCTATTGACCGTCATACATCGCAAAAACACAATCATACAGGCAGA
GACCAGGAGAAGCATGATCGCCACTGCTCCCAACTACTGGAGGCATTTTT
GGCCCTGTTTCGTTTTCCTGCAGTTCCTCTTCGTTTTCCAGCAAAGTTTT
TCCGCAGCCTCCTCATCCTCTCCCAGCACAACGACAAGCGCTCCTGGAGG
CTTTACTGCAAAGGGAGAGCTGCCGCAAATGGAGTTTGCGCGTTTGGGAG
CTTATCGCTTCGCTTCGCCTAGTGTGTGTGTACGGACACGCCAAGCTTGC
TACGTCTTGTGTGCCCGGCCTGAGCGAAACCCGCTGCGGGAGGTCTACAA
GGAGGGTAGCAGCAGTAGCAGTAGCAGTAGTAGTAGCAGCACCAGCACCA
GTTATTCAAGCAGCAGCGGCAGCAGCACAGGAAGTGGGATTCATCTCGTC
TCGCCCGGGATTGGTTGTCTTTGCCAGGGGCAAGACGGGGACGTGCTCGC
CCAGTTAGGTCTGATGCGACGGGAGGCAGAGAGGTACCTACATACTTTTG
CCCATCCTATCTCTGCTCGCAGCCTGGCACAGCGACTGGGGGCAATATTG
GGGGGAAAAGGACAGGAGACATGGTCTAGACCACCATGTTGTATTTCGGT
AATCATGTCTTCCTCGGGTGGATCGTTTTCACCACCACCATCATCAGCAG
CTGGGGCAACAGCAGTAGCTGGAGGAGCAGTAGCAGCAACAGCAGGAGTA
GGAGTAGTGGCAGATGGAGTAGAAGAAGATAGAGAAGGAGGACGAGAAAG
AGGAGGGGGAGGAGGAGTAGCAGCTCCCTTCTCTTCCTTTCCCTCCTCCC
CTCATAAGGGGAGAAGAAAGGATGGGTGTCAAGAGGCCGAGATGTACCTG
GTGGACCCGACGGGCTTAGTGTTATGTGTGCGGGGACAGGCTTTCGGTGG
AAGGCTCGTGGATGATCCCGTGGCACATGAGCTGCAGGAGTGGTTGGCGA
GGGAAGAGACGTTCGGGCGTATCGACGATGGAGGGGAGGGAGAGGGGGTG
GAGGACGAGGGAGGAGAGGAGGAGGGGGTGGTATGGGCGAAGCTGTGGGA
GGGGATGCAAAAATACTTTCCGACCCTTGTGGGGCATCCGGAGGAGGTGG
AGTGTGCAAAGGCGGCGAGGTCGTCGTTTCGAAGGGTGGGGACCTTGGAT
CAGGTGTTGTTGAGATGTGGTGGAAAATAACGAAGGAAGGGATCGGCATA
GGGAAGGAGAAAAAGAAAGGGGGATGTAGACATTTGTGAAGACGAAAGGA
GAAACATCTGCTTCGATGGGCACTTTTCCAACTGTAATCATAGTATTTGT
ATAATTATAGTTGTCTTAATGTGCGATATATATGAAGACATTCATTCGGT
CTCGAAGGGTTTGTACATGCTTTCTTTCGTACAGTCTAATGTGATGGAGC
GATCATGACTTCCCTCCTTCCCTCCCTCCCTGCTTTCTCTCCTTTTCGAC
CGACTCGTCCTATCCTTCCCTTCAAGCTACAGAGAGACAGTGGGTATTCC
ATCCTTTCTTTGCCTTCTTCCCTCCCCCCCTTCCTCCCCTCCCAAAAACA
ACCCTACGTGCCTCGGCTGCGTCG
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protein sequence of jgi.p|Nanoce1779_2|629082

>mRNA_3713-protein ID=mRNA_3713-protein|Name=jgi.p|Nanoce1779_2|629082|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MIATAPNYWRHFWPCFVFLQFLFVFQQSFSAASSSSPSTTTSAPGGFTAK
GELPQMEFARLGAYRFASPSVCVRTRQACYVLCARPERNPLREVYKEGSS
SSSSSSSSSTSTSYSSSSGSSTGSGIHLVSPGIGCLCQGQDGDVLAQLGL
MRREAERYLHTFAHPISARSLAQRLGAILGGKGQETWSRPPCCISVIMSS
SGGSFSPPPSSAAGATAVAGGAVAATAGVGVVADGVEEDREGGRERGGGG
GVAAPFSSFPSSPHKGRRKDGCQEAEMYLVDPTGLVLCVRGQAFGGRLVD
DPVAHELQEWLAREETFGRIDDGGEGEGVEDEGGEEEGVVWAKLWEGMQK
YFPTLVGHPEEVECAKAARSSFRRVGTLDQVLLRCGGK*
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mRNA from alignment at scaffold_6:1055440..1057113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3713 ID=mRNA_3713|Name=jgi.p|Nanoce1779_2|629082|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at scaffold_6:1055440..1057113- (Nannochloropsis oceanica)
CTGATTGTGATGGCTTCCAGGCAGGCCCGTAGCAGTTCCTTCGGAAGGCA
GGCCCTCTATTGACCGTCATACATCGCAAAAACACAATCATACAGGCAGA
GACCAGGAGAAGCATGATCGCCACTGCTCCCAACTACTGGAGGCATTTTT
GGCCCTGTTTCGTTTTCCTGCAGTTCCTCTTCGTTTTCCAGCAAAGTTTT
TCCGCAGCCTCCTCATCCTCTCCCAGCACAACGACAAGCGCTCCTGGAGG
CTTTACTGCAAAGGGAGAGCTGCCGCAAATGGAGTTTGCGCGTTTGGGAG
CTTATCGCTTCGCTTCGCCTAGTGTGTGTGTACGGACACGCCAAGCTTGC
TACGTCTTGTGTGCCCGGCCTGAGCGAAACCCGCTGCGGGAGGTCTACAA
GGAGGGTAGCAGCAGTAGCAGTAGCAGTAGTAGTAGCAGCACCAGCACCA
GTTATTCAAGCAGCAGCGGCAGCAGCACAGGAAGTGGGATTCATCTCGTC
TCGCCCGGGATTGGTTGTCTTTGCCAGGGGCAAGACGGGGACGTGCTCGC
CCAGTTAGGTCTGATGCGACGGGAGGCAGAGAGGTACCTACATACTTTTG
CCCATCCTATCTCTGCTCGCAGCCTGGCACAGCGACTGGGGGCAATATTG
GGGGGAAAAGGACAGGAGACATGGTCTAGACCACCATGTTGTATTTCGGT
AATCATGTCTTCCTCGGGTGGATCGTTTTCACCACCACCATCATCAGCAG
CTGGGGCAACAGCAGTAGCTGGAGGAGCAGTAGCAGCAACAGCAGGAGTA
GGAGTAGTGGCAGATGGAGTAGAAGAAGATAGAGAAGGAGGACGAGAAAG
AGGAGGGGGAGGAGGAGTAGCAGCTCCCTTCTCTTCCTTTCCCTCCTCCC
CTCATAAGGGGAGAAGAAAGGATGGGTGTCAAGAGGCCGAGATGTACCTG
GTGGACCCGACGGGCTTAGTGTTATGTGTGCGGGGACAGGCTTTCGGTGG
AAGGCTCGTGGATGATCCCGTGGCACATGAGCTGCAGGAGTGGTTGGCGA
GGGAAGAGACGTTCGGGCGTATCGACGATGGAGGGGAGGGAGAGGGGGTG
GAGGACGAGGGAGGAGAGGAGGAGGGGGTGGTATGGGCGAAGCTGTGGGA
GGGGATGCAAAAATACTTTCCGACCCTTGTGGGGCATCCGGAGGAGGTGG
AGTGTGCAAAGGCGGCGAGGTCGTCGTTTCGAAGGGTGGGGACCTTGGAT
CAGGTGTTGTTGAGATGTGGTGGAAAATAACGAAGGAAGGGATCGGCATA
GGGAAGGAGAAAAAGAAAGGGGGATGTAGACATTTGTGAAGACGAAAGGA
GAAACATCTGCTTCGATGGGCACTTTTCCAACTGTAATCATAGTATTTGT
ATAATTATAGTTGTCTTAATGTGCGATATATATGAAGACATTCATTCGGT
CTCGAAGGGTTTGTACATGCTTTCTTTCGTACAGTCTAATGTGATGGAGC
GATCATGACTTCCCTCCTTCCCTCCCTCCCTGCTTTCTCTCCTTTTCGAC
CGACTCGTCCTATCCTTCCCTTCAAGCTACAGAGAGACAGTGGGTATTCC
ATCCTTTCTTTGCCTTCTTCCCTCCCCCCCTTCCTCCCCTCCCAAAAACA
ACCCTACGTGCCTCGGCTGCGTCG
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Coding sequence (CDS) from alignment at scaffold_6:1055440..1057113-

>mRNA_3713 ID=mRNA_3713|Name=jgi.p|Nanoce1779_2|629082|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_6:1055440..1057113- (Nannochloropsis oceanica)
ATGATCGCCACTGCTCCCAACTACTGGAGGCATTTTTGGCCCTGTTTCGT
TTTCCTGCAGTTCCTCTTCGTTTTCCAGCAAAGTTTTTCCGCAGCCTCCT
CATCCTCTCCCAGCACAACGACAAGCGCTCCTGGAGGCTTTACTGCAAAG
GGAGAGCTGCCGCAAATGGAGTTTGCGCGTTTGGGAGCTTATCGCTTCGC
TTCGCCTAGTGTGTGTGTACGGACACGCCAAGCTTGCTACGTCTTGTGTG
CCCGGCCTGAGCGAAACCCGCTGCGGGAGGTCTACAAGGAGGGTAGCAGC
AGTAGCAGTAGCAGTAGTAGTAGCAGCACCAGCACCAGTTATTCAAGCAG
CAGCGGCAGCAGCACAGGAAGTGGGATTCATCTCGTCTCGCCCGGGATTG
GTTGTCTTTGCCAGGGGCAAGACGGGGACGTGCTCGCCCAGTTAGGTCTG
ATGCGACGGGAGGCAGAGAGGTACCTACATACTTTTGCCCATCCTATCTC
TGCTCGCAGCCTGGCACAGCGACTGGGGGCAATATTGGGGGGAAAAGGAC
AGGAGACATGGTCTAGACCACCATGTTGTATTTCGGTAATCATGTCTTCC
TCGGGTGGATCGTTTTCACCACCACCATCATCAGCAGCTGGGGCAACAGC
AGTAGCTGGAGGAGCAGTAGCAGCAACAGCAGGAGTAGGAGTAGTGGCAG
ATGGAGTAGAAGAAGATAGAGAAGGAGGACGAGAAAGAGGAGGGGGAGGA
GGAGTAGCAGCTCCCTTCTCTTCCTTTCCCTCCTCCCCTCATAAGGGGAG
AAGAAAGGATGGGTGTCAAGAGGCCGAGATGTACCTGGTGGACCCGACGG
GCTTAGTGTTATGTGTGCGGGGACAGGCTTTCGGTGGAAGGCTCGTGGAT
GATCCCGTGGCACATGAGCTGCAGGAGTGGTTGGCGAGGGAAGAGACGTT
CGGGCGTATCGACGATGGAGGGGAGGGAGAGGGGGTGGAGGACGAGGGAG
GAGAGGAGGAGGGGGTGGTATGGGCGAAGCTGTGGGAGGGGATGCAAAAA
TACTTTCCGACCCTTGTGGGGCATCCGGAGGAGGTGGAGTGTGCAAAGGC
GGCGAGGTCGTCGTTTCGAAGGGTGGGGACCTTGGATCAGGTGTTGTTGA
GATGTGGTGGAAAATAA
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Synonyms
Publications