jgi.p|Nanoce1779_2|371128, mRNA_3711 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|371128
Unique NamemRNA_3711
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length806
Alignment locationscaffold_6:1050843..1052576 -

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Properties
Property NameValue
TranscriptId371214
TrackFilteredModels2
ProteinId371128
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1050843..1052576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|371128gene_3711Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|371128mRNA_3711-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3711CDS_3711Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3711 ID=mRNA_3711|Name=jgi.p|Nanoce1779_2|371128|organism=Nannochloropsis oceanica|type=mRNA|length=806bp
GGGGGTTAATGTCGTGAGAAGGGCGACGCACGCAGATACTTCCACCAGCC
ACCATCTCTGCACACCGCAGCCGGGCAAATGAGCATACGTGGTGTGCCCC
AGCTTCGTTCCTTGCTGCTACGGTACTCGGACCGAGACGGCTCCAGCCGG
GCCATAAGGGACTACATTGGATCGCGGCTGGTGGCCTTTGCACAGGCGCA
CGAGCATGTCAAGGTGACGACGGAGCTGAAACGGAATGCACACCCCGTGG
TCCAGGCCGATTACGCCTTCGGGGAGCCCAAGGTAGTATGTGTTCGGACG
GCCGAAACGGCGGAGGATGTGGAGGCGGTAATTCTTGCTCTGCGAAATAC
CACTGGTAGGAAAGTCAAGCCCTTGCGGAAGCCGGTGGTGTCGAGACTGC
CTAGCATTCAGGGAATGTGGGATCCGCGCATGCCACTGCACAAGGAGAAA
GTTACGTTGGAGCACGGCCCGGAAGCGTGAGAAGAATAGCAGTTGAGAAG
AAGAGCAGTCATCATGAAATAGATACGGGCAAGACGAGACGAGGATCGAC
GCGCGAAGGAAGCAGTGCGCGACAGGTGGTTGTTGCTGTGCGGTATGCTC
TCCATCTGGACGCGAAGCATCAATTTCAATTACGCGCACGGCAGTCAGCC
ATAGCAAGGAGAGATAGCCAAGCCATGGCATAAAAAAAATCCTCGATGCA
AACTATAGACAACCCAATCGGCCTCATTTGGTTTCTGGTTTAGCCTGTAT
GCCTGCAGTCCTCGGGGCAGGAGGTTACATATTTTCCCTTTTTATCAACC
ATTCCC
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protein sequence of jgi.p|Nanoce1779_2|371128

>mRNA_3711-protein ID=mRNA_3711-protein|Name=jgi.p|Nanoce1779_2|371128|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MSIRGVPQLRSLLLRYSDRDGSSRAIRDYIGSRLVAFAQAHEHVKVTTEL
KRNAHPVVQADYAFGEPKVVCVRTAETAEDVEAVILALRNTTGRKVKPLR
KPVVSRLPSIQGMWDPRMPLHKEKVTLEHGPEA*
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mRNA from alignment at scaffold_6:1050843..1052576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3711 ID=mRNA_3711|Name=jgi.p|Nanoce1779_2|371128|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at scaffold_6:1050843..1052576- (Nannochloropsis oceanica)
GGGGGTTAATGTCGTGAGAAGGGTGAGCAGGAGTGGAGAGAGGCAAGGGT
TCTTGTACAAGGAGGGACAAATTAAGTGTGGCCATTTTCGGGCGGTAGAG
GCGTGCTTGATTTTTCGGGCGACCGAGTGGGCGATGACGGCTTGAGACCG
CAGAGCTAGCATTTCCCGACTAGCCACCTGTGAACATACAGCCACAAATT
GTGTCTGTAGCAAGGTCTTGCTTGTCTGTGGGTGAAGGCGATGAATGCTT
GGCGGCTCTGTCGTTTTCGCTCATCTCTTGGGCACAAATAAGCAAACCCT
GCCTTACTCATTCATTATCAACATCATCCAAAGGCGACGCACGCAGATAC
TTCCACCAGCCACCATCTCTGCACACCGCAGCCGGGCAAATGAGCATACG
TGGTGTGCCCCAGCTTCGTTCCTTGCTGCTACGGTACTCGGACCGAGACG
GCTCCAGCCGGGCCATAAGGTAAGGAGGGATGAAGGGAAGGAGAAGGGGT
ATAGTGAGGAGAGGCGAGGAGTGGTAGACGCCCCTTAGTAGACGGCGGCA
GACAAGTCTCAGGCGCAGTTCGCCCACCATGCAACATCCACCACAGGGAC
TACATTGGATCGCGGCTGGTGGCCTTTGCACAGGCGCACGAGCATGTCAA
GGTGACGACGGAGCTGAAACGGAATGCACACCCCGTGGTCCAGGCCGATT
ACGGTACGTGTGGATTAGACGCGAGGAAGGTGGACACGAACAGAAAGAAA
TGGGAATGAAAACAGGACTGAACGGTTGGAAAAGTACCTGTCGTAAGTTT
GCCAGGTCGTCTTCATTCTTGGGAGACAGTGTCTCTCGCTTCCACCGCCA
TCACCACCACCTCATCCAGCTTCCTCCCTCCCTTTCTTCCTTTCCTCTCT
ATCTTTCGCACAGCCTTCGGGGAGCCCAAGGTAGTATGTGTTCGGACGGC
CGAAACGGCGGAGGATGTGGAGGCGGTAATTCTTGCTCTGCGAAATACCA
CTGGTAGGAAAGTCAAGCCCTTGCGGAAGCCGGTGGTGTCGAGACTGCCT
AGCATTCAGGTAGGGAGTGAGGGAGAAGGGAGATGGATGAAATGTAGGAA
TAGAGATTCATAGAGAGTGCCGAATGTAATTGTTGAGATGCTCCTAGCTA
CATGGCTTCTGTCTTGGCAACCACACGGATATATGTAACCCAAAGCAATT
TATTCCTGAAAAAATACAGGGAATGTGGGATCCGCGCATGCCACTGCACA
AGGAGAAAGTTACGTTGGAGCACGGCCCGGAAGCGTGAGAAGAATAGCAG
TTGAGAAGAAGAGCAGTCATCATGAAATAGATACGGGCAAGACGAGACGA
GGGTGAGCGGGTGGATGGGTCTTGAGGCCATCAGCTTGATGAGGAACTTC
AAATTTGTGATTTGAAATGTAAAAAAAGAAGGAATGACAGTGGCATTACC
ACGATACGTATTCCCCGGCCAGATCGACGCGCGAAGGAAGCAGTGCGCGA
CAGGTGGTTGTTGCTGTGCGGTATGCTCTCCATCTGGACGCGAAGCATCA
ATTTCAATTACGCGCACGGCAGTCAGCCATAGCAAGGAGAGATAGCCAAG
CCATGGCATAAAAAAAATCCTCGATGCAAACTATAGACAACCCAATCGGC
CTCATTTGGTTTCTGGTTTAGCCTGTATGCCTGCAGTCCTCGGGGCAGGA
GGTTACATATTTTCCCTTTTTATCAACCATTCCC
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Coding sequence (CDS) from alignment at scaffold_6:1050843..1052576-

>mRNA_3711 ID=mRNA_3711|Name=jgi.p|Nanoce1779_2|371128|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_6:1050843..1052576- (Nannochloropsis oceanica)
GGAATGTGGGATCCGCGCATGCCACTGCACAAGGAGAAAGTTACGTTGGA
GCACGGCCCGGAAGCGTGACCTTCGGGGAGCCCAAGGTAGTATGTGTTCG
GACGGCCGAAACGGCGGAGGATGTGGAGGCGGTAATTCTTGCTCTGCGAA
ATACCACTGGTAGGAAAGTCAAGCCCTTGCGGAAGCCGGTGGTGTCGAGA
CTGCCTAGCATTCAGGGACTACATTGGATCGCGGCTGGTGGCCTTTGCAC
AGGCGCACGAGCATGTCAAGGTGACGACGGAGCTGAAACGGAATGCACAC
CCCGTGGTCCAGGCCGATTACGATGAGCATACGTGGTGTGCCCCAGCTTC
GTTCCTTGCTGCTACGGTACTCGGACCGAGACGGCTCCAGCCGGGCCATA
AGGGAATGTGGGATCCGCGCATGCCACTGCACAAGGAGAAAGTTACGTTG
GAGCACGGCCCGGAAGCGTGACCTTCGGGGAGCCCAAGGTAGTATGTGTT
CGGACGGCCGAAACGGCGGAGGATGTGGAGGCGGTAATTCTTGCTCTGCG
AAATACCACTGGTAGGAAAGTCAAGCCCTTGCGGAAGCCGGTGGTGTCGA
GACTGCCTAGCATTCAGGGACTACATTGGATCGCGGCTGGTGGCCTTTGC
ACAGGCGCACGAGCATGTCAAGGTGACGACGGAGCTGAAACGGAATGCAC
ACCCCGTGGTCCAGGCCGATTACGATGAGCATACGTGGTGTGCCCCAGCT
TCGTTCCTTGCTGCTACGGTACTCGGACCGAGACGGCTCCAGCCGGGCCA
TAAGGGAATGTGGGATCCGCGCATGCCACTGCACAAGGAGAAAGTTACGT
TGGAGCACGGCCCGGAAGCGTGACCTTCGGGGAGCCCAAGGTAGTATGTG
TTCGGACGGCCGAAACGGCGGAGGATGTGGAGGCGGTAATTCTTGCTCTG
CGAAATACCACTGGTAGGAAAGTCAAGCCCTTGCGGAAGCCGGTGGTGTC
GAGACTGCCTAGCATTCAGGGACTACATTGGATCGCGGCTGGTGGCCTTT
GCACAGGCGCACGAGCATGTCAAGGTGACGACGGAGCTGAAACGGAATGC
ACACCCCGTGGTCCAGGCCGATTACGATGAGCATACGTGGTGTGCCCCAG
CTTCGTTCCTTGCTGCTACGGTACTCGGACCGAGACGGCTCCAGCCGGGC
CATAAGGGAATGTGGGATCCGCGCATGCCACTGCACAAGGAGAAAGTTAC
GTTGGAGCACGGCCCGGAAGCGTGACCTTCGGGGAGCCCAAGGTAGTATG
TGTTCGGACGGCCGAAACGGCGGAGGATGTGGAGGCGGTAATTCTTGCTC
TGCGAAATACCACTGGTAGGAAAGTCAAGCCCTTGCGGAAGCCGGTGGTG
TCGAGACTGCCTAGCATTCAGGGACTACATTGGATCGCGGCTGGTGGCCT
TTGCACAGGCGCACGAGCATGTCAAGGTGACGACGGAGCTGAAACGGAAT
GCACACCCCGTGGTCCAGGCCGATTACGATGAGCATACGTGGTGTGCCCC
AGCTTCGTTCCTTGCTGCTACGGTACTCGGACCGAGACGGCTCCAGCCGG
GCCATAAG
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Synonyms
Publications