jgi.p|Nanoce1779_2|668412, mRNA_371 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668412
Unique NamemRNA_371
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length681
Alignment locationscaffold_3:922121..922903 -

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Properties
Property NameValue
TranscriptId668498
TrackFilteredModels2
ProteinId668412
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:922121..922903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668412gene_371Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668412mRNA_371-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_371CDS_371Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_371 ID=mRNA_371|Name=jgi.p|Nanoce1779_2|668412|organism=Nannochloropsis oceanica|type=mRNA|length=681bp
ATGCCGGCGGTGACGGACAAGAGTACCGGTACCACGCCCATTTGCCAGAT
GTTTCCATATTTCACAGTCACAGCCTGCAACTGCTACGAGCACATGACCC
GTTTGGCCAGGTCATACGGTTGGATCTCGAGCACGCTTCTGTCGCTGGCC
GACCAGTCGCAATCGGCGTGTACTTCTGTCGCAAGATCCACCTTTGTAAG
TGTGCTTTTGCAGCTTCTGCTAGCCGCCTGCACTTTGTTCGTCAATGCAC
TTCTAGTCTGGGTCATTGGGAAGCTGATAATATTTGAGTTACACGTGAGT
AGCGATGTAGAGGCCAGTCAGGTAATGACCCACGTCTTCGTCTCGTAATT
TATAAATGTAGCCGTCTTGTTACTGCTCGTGTACGGTGGCTACGATGACT
CGAGTGGCGGGCAGCAGCCCGTTGTGTGGAAATGGACGAAAAAATCGCTG
CGCACCTTGGGCATTTTTGCTGGCGACTACCATGATACAACAGTGCAATG
CGAGGATTCCTACGGCTTGGTCAAGCCTGGCGCGGTGGCAAGGCGCAGCC
ATCACCTCACTTGCTACAGCAGGACTTGAATAATATATTCGTCGGCCCTC
CATTTAACATAGTGTACCGCAGCGGACAGTTATTGACCATTGTGTTCTTT
TCGTGGATGTATAGCAGCGGCCCACCCACCC
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protein sequence of jgi.p|Nanoce1779_2|668412

>mRNA_371-protein ID=mRNA_371-protein|Name=jgi.p|Nanoce1779_2|668412|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MPAVTDKSTGTTPICQMFPYFTVTACNCYEHMTRLARSYGWISSTLLSLA
DQSQSACTSVARSTFVSVLLQLLLAACTLFVNALLVWVIGKLIIFELHVS
SDVEASQVMTHVFVS*
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mRNA from alignment at scaffold_3:922121..922903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_371 ID=mRNA_371|Name=jgi.p|Nanoce1779_2|668412|organism=Nannochloropsis oceanica|type=mRNA|length=783bp|location=Sequence derived from alignment at scaffold_3:922121..922903- (Nannochloropsis oceanica)
ATGCCGGCGGTGACGGACAAGAGTACCGGTACCACGCCCATTTGCCAGAT
GTTTCCATATTTCACAGTCACAGCCTGCAACTGCTACGAGCACATGACCC
GTTTGGCCAGGTCATACGGTTGGATCTCGAGCACGCTTCTGTCGCTGGCC
GACCAGTCGCAATCGGCGTGTACTTCTGTCGCAAGATCCACCTTTGTAAG
TGTGCTTTTGCAGCTTCTGCTAGCCGCCTGCACTTTGTTCGTCAATGCAC
TTCTAGTCTGGGTCATTGGGAAGCTGATAATATTTGAGTTACACGTGAGT
AGCGATGTAGAGGCCAGTCAGGTAATGACCCACGTCTTCGTCTCGTAATT
TATAAATGTAGCCGTCTTGTTACTGCTCGTGTACGGTGGCTACGATGACT
CGAGTGGCGGGCAGCAGCCCGTTGTGTGGAAATGGACGAAAAAATCGCTG
CGCACCTTGGGCATTTTTGCTGGCGACTACCATGATACAACAGTGCAATG
GTACGCAAACGTAGGCGTACAATTGCACTTAATTGCATAAATCGCATTTT
CACCCCACATATCTATCCTCTGGGCCAATATCTTATTTTAATTCCAATGC
AGCGAGGATTCCTACGGCTTGGTCAAGCCTGGCGCGGTGGCAAGGCGCAG
CCATCACCTCACTTGCTACAGCAGGACTTGAATAATATATTCGTCGGCCC
TCCATTTAACATAGTGTACCGCAGCGGACAGTTATTGACCATTGTGTTCT
TTTCGTGGATGTATAGCAGCGGCCCACCCACCC
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Coding sequence (CDS) from alignment at scaffold_3:922121..922903-

>mRNA_371 ID=mRNA_371|Name=jgi.p|Nanoce1779_2|668412|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_3:922121..922903- (Nannochloropsis oceanica)
ATGCCGGCGGTGACGGACAAGAGTACCGGTACCACGCCCATTTGCCAGAT
GTTTCCATATTTCACAGTCACAGCCTGCAACTGCTACGAGCACATGACCC
GTTTGGCCAGGTCATACGGTTGGATCTCGAGCACGCTTCTGTCGCTGGCC
GACCAGTCGCAATCGGCGTGTACTTCTGTCGCAAGATCCACCTTTGTAAG
TGTGCTTTTGCAGCTTCTGCTAGCCGCCTGCACTTTGTTCGTCAATGCAC
TTCTAGTCTGGGTCATTGGGAAGCTGATAATATTTGAGTTACACGTGAGT
AGCGATGTAGAGGCCAGTCAGGTAATGACCCACGTCTTCGTCTCGTAA
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Synonyms
Publications