jgi.p|Nanoce1779_2|583132, mRNA_3707 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583132
Unique NamemRNA_3707
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length525
Alignment locationscaffold_6:1033850..1034846 +

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Properties
Property NameValue
TranscriptId583218
TrackFilteredModels2
ProteinId583132
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1033850..1034846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583132gene_3707Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583132mRNA_3707-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3707CDS_3707Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3707 ID=mRNA_3707|Name=jgi.p|Nanoce1779_2|583132|organism=Nannochloropsis oceanica|type=mRNA|length=525bp
AACACCAGCGCCCAAACAAACCAGGGGCACCGTCTCGACGACTCGCCGTT
GTATTATGCTCGCCATAGCCACCCGCCAATTGGCACGCCGTGTCGCTTTC
ACGCCCGCCGCTCGCCAACTCAACATCACCCGCACCCTGGCCTCCACTCG
GTACGCAACCTCTCACGAATGGGTGAAGCTGGATGGGGACGTTGCGACGG
TGGGCATCACGGGCTTTGCGGCGAAGGCATTGGGTGATGTGGTGTACGTG
GACTTGCCCGAGGTGGGGGCGTCGTTCGCCAAGGGCGACCCGTTCGGATC
CGTGGAATCCGTCAAAGCAGCCAGTGACGTGTACGCACCCATCTCTGGAG
AGATTGTTGAGTCCAACGCTGCTTTGTCTGACGACCCGGGGAATGTGAAC
AAGGCCGCCGAGACTGATGCGTGGTTTGCCAAGTTTAAGGTTACGGATAA
GAGCGAGTTTGATGCTTTAATGGACTCAGAGGCATACAAGGCACACACCG
AGAAGTAGAGGCAGAGGGGGAGGGG
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protein sequence of jgi.p|Nanoce1779_2|583132

>mRNA_3707-protein ID=mRNA_3707-protein|Name=jgi.p|Nanoce1779_2|583132|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MLAIATRQLARRVAFTPAARQLNITRTLASTRYATSHEWVKLDGDVATVG
ITGFAAKALGDVVYVDLPEVGASFAKGDPFGSVESVKAASDVYAPISGEI
VESNAALSDDPGNVNKAAETDAWFAKFKVTDKSEFDALMDSEAYKAHTEK
*
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mRNA from alignment at scaffold_6:1033850..1034846+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3707 ID=mRNA_3707|Name=jgi.p|Nanoce1779_2|583132|organism=Nannochloropsis oceanica|type=mRNA|length=997bp|location=Sequence derived from alignment at scaffold_6:1033850..1034846+ (Nannochloropsis oceanica)
AACACCAGCGCCCAAACAAACCAGGGGCACCGTCTCGACGACTCGCCGTT
GTATTATGCTCGCCATAGCCACCCGCCAATTGGCACGCCGTGTCGCTTTC
ACGGTAAGTTTTTGGTGTCGACTTATCGTCGTCGTCATCGTAGTCGTTGT
ATTTCCCATCCGCGCCCCTATGCATACGATGTTAGGAACGATGTGATGCT
CTCTCCACATCTCTGTACCTGTGCGCATATGCCAAAAAAACATGCCAATA
CACTTTCTGCATCATCACGCAAATTATTTACGTCCCTCTTTCCCCTCTTT
GTCCATGCTTTCGTCCATCCCCCTTTATGACTTCCACCGCAGCCCGCCGC
TCGCCAACTCAACATCACCCGCACCCTGGCCTCCACTCGGTACGCAACCT
CTCACGAATGGGTGAAGCTGGATGGGGACGTTGCGACGGTGGGCATCACG
GGCTTTGCGGCGAAGGCATTGGGTGATGTGGTGTACGTGGACTTGCCCGA
GGTGGGGGCGTCGTTCGCCAAGGGGTAAGTCCATCAAGAATGAAGATGAG
ATCACAAGCGAACCTCCTTCTCCCCCCTTCCGCCCCACCTTTGCCCAACG
CTCCCACCTCTCCTCATATTTGATTGAAGTGCGTTGTATTTGTTGTGAAG
CCTTGCAAACGATTTTGAGGAAGGGAAAATGACGGAAAGTCATGGCTGCT
TTTCACCCTCTTACCACATCCCTCCCTCCGTCCCTCCTCCCTTCCCCCTT
GTTCCAGCGACCCGTTCGGATCCGTGGAATCCGTCAAAGCAGCCAGTGAC
GTGTACGCACCCATCTCTGGAGAGATTGTTGAGTCCAACGCTGCTTTGTC
TGACGACCCGGGGAATGTGAACAAGGCCGCCGAGACTGATGCGTGGTTTG
CCAAGTTTAAGGTTACGGATAAGAGCGAGTTTGATGCTTTAATGGACTCA
GAGGCATACAAGGCACACACCGAGAAGTAGAGGCAGAGGGGGAGGGG
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Coding sequence (CDS) from alignment at scaffold_6:1033850..1034846+

>mRNA_3707 ID=mRNA_3707|Name=jgi.p|Nanoce1779_2|583132|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_6:1033850..1034846+ (Nannochloropsis oceanica)
ATGCTCGCCATAGCCACCCGCCAATTGGCACGCCGTGTCGCTTTCACGCC
CGCCGCTCGCCAACTCAACATCACCCGCACCCTGGCCTCCACTCGGTACG
CAACCTCTCACGAATGGGTGAAGCTGGATGGGGACGTTGCGACGGTGGGC
ATCACGGGCTTTGCGGCGAAGGCATTGGGTGATGTGGTGTACGTGGACTT
GCCCGAGGTGGGGGCGTCGTTCGCCAAGGGCGACCCGTTCGGATCCGTGG
AATCCGTCAAAGCAGCCAGTGACGTGTACGCACCCATCTCTGGAGAGATT
GTTGAGTCCAACGCTGCTTTGTCTGACGACCCGGGGAATGTGAACAAGGC
CGCCGAGACTGATGCGTGGTTTGCCAAGTTTAAGGTTACGGATAAGAGCG
AGTTTGATGCTTTAATGGACTCAGAGGCATACAAGGCACACACCGAGAAG
TAGATGCTCGCCATAGCCACCCGCCAATTGGCACGCCGTGTCGCTTTCAC
GCCCGCCGCTCGCCAACTCAACATCACCCGCACCCTGGCCTCCACTCGGT
ACGCAACCTCTCACGAATGGGTGAAGCTGGATGGGGACGTTGCGACGGTG
GGCATCACGGGCTTTGCGGCGAAGGCATTGGGTGATGTGGTGTACGTGGA
CTTGCCCGAGGTGGGGGCGTCGTTCGCCAAGGGCGACCCGTTCGGATCCG
TGGAATCCGTCAAAGCAGCCAGTGACGTGTACGCACCCATCTCTGGAGAG
ATTGTTGAGTCCAACGCTGCTTTGTCTGACGACCCGGGGAATGTGAACAA
GGCCGCCGAGACTGATGCGTGGTTTGCCAAGTTTAAGGTTACGGATAAGA
GCGAGTTTGATGCTTTAATGGACTCAGAGGCATACAAGGCACACACCGAG
AAGTAGATGCTCGCCATAGCCACCCGCCAATTGGCACGCCGTGTCGCTTT
CACGCCCGCCGCTCGCCAACTCAACATCACCCGCACCCTGGCCTCCACTC
GGTACGCAACCTCTCACGAATGGGTGAAGCTGGATGGGGACGTTGCGACG
GTGGGCATCACGGGCTTTGCGGCGAAGGCATTGGGTGATGTGGTGTACGT
GGACTTGCCCGAGGTGGGGGCGTCGTTCGCCAAGGGCGACCCGTTCGGAT
CCGTGGAATCCGTCAAAGCAGCCAGTGACGTGTACGCACCCATCTCTGGA
GAGATTGTTGAGTCCAACGCTGCTTTGTCTGACGACCCGGGGAATGTGAA
CAAGGCCGCCGAGACTGATGCGTGGTTTGCCAAGTTTAAGGTTACGGATA
AGAGCGAGTTTGATGCTTTAATGGACTCAGAGGCATACAAGGCACACACC
GAGAAGTAG
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Synonyms
Publications