jgi.p|Nanoce1779_2|637959, mRNA_3705 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|637959
Unique NamemRNA_3705
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length405
Alignment locationscaffold_6:1031093..1031751 +

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Properties
Property NameValue
TranscriptId638045
TrackFilteredModels2
ProteinId637959
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1031093..1031751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637959gene_3705Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637959mRNA_3705-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3705CDS_3705Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3705 ID=mRNA_3705|Name=jgi.p|Nanoce1779_2|637959|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGCCACCTCCTGCCCCTGTCGCCACCTCGGCAGTCACCACCGCCGTCCT
CCAGCTGTATCGTCGCATTATCAAGAATGCCAAGGTCTTTCCCAGCAAAG
GGCGTGACCGCATGGTCAAGGAAATCCGAGAGGAGTTCCGCGTCAACGCC
AAAGAAACTGATCCCGATAAGATCCGGAACCATCGCAGCATGGCCATCAA
AGGCCTTAGTCAGCTACAAGCCTACACAGGATTGGTGGACACAGACATGG
ACTGGTCCGTTACCATGGAGCCCGCACCGTTAGGAGGGCTATCGGAGGAA
AAGGTAGAGGAGAAGCTAAAGCGTGTGTCTAAGGCGACAGTCAGCTCCGG
GAGAGAAGAGAAGGGGGTGGGTGGGAAGGGGCTGGAGGAAGAGGGAAAGA
GATGA
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protein sequence of jgi.p|Nanoce1779_2|637959

>mRNA_3705-protein ID=mRNA_3705-protein|Name=jgi.p|Nanoce1779_2|637959|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MPPPAPVATSAVTTAVLQLYRRIIKNAKVFPSKGRDRMVKEIREEFRVNA
KETDPDKIRNHRSMAIKGLSQLQAYTGLVDTDMDWSVTMEPAPLGGLSEE
KVEEKLKRVSKATVSSGREEKGVGGKGLEEEGKR*
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mRNA from alignment at scaffold_6:1031093..1031751+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3705 ID=mRNA_3705|Name=jgi.p|Nanoce1779_2|637959|organism=Nannochloropsis oceanica|type=mRNA|length=659bp|location=Sequence derived from alignment at scaffold_6:1031093..1031751+ (Nannochloropsis oceanica)
ATGCCACCTCCTGCCCCTGTCGCCACCTCGGCAGTCACCACCGCCGTCCT
CCAGCTGTATCGTCGCATTATCAAGAATGCCAAGGTCTTTCCCAGCAAAG
GGCGTGACCGCATGGTCAAGGAAATCCGAGAGGGTAAGTTATTATGTTCG
GATGGCTATGCACAGGGGCGACTGATAGTAATACGAAATAGTGGCGTTAC
ATCTTGCATGCTTGCCTTGTTTCTCCTTCTTATAGCCTGTAAAGATTGTG
CCCCATGAGTTCCCTTCGCACTTCGCTGGCTTGAGCTCTCTCCTTTCTGA
TGCCTCACCCACCCGTTCCCGAAGCTTCAATTCGGCCCTCCTCAATCCAT
TGGCCACGCCTCATACACATCCCACCTCTACAAACAGAGTTCCGCGTCAA
CGCCAAAGAAACTGATCCCGATAAGATCCGGAACCATCGCAGCATGGCCA
TCAAAGGCCTTAGTCAGCTACAAGCCTACACAGGATTGGTGGACACAGAC
ATGGACTGGTCCGTTACCATGGAGCCCGCACCGTTAGGAGGGCTATCGGA
GGAAAAGGTAGAGGAGAAGCTAAAGCGTGTGTCTAAGGCGACAGTCAGCT
CCGGGAGAGAAGAGAAGGGGGTGGGTGGGAAGGGGCTGGAGGAAGAGGGA
AAGAGATGA
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Coding sequence (CDS) from alignment at scaffold_6:1031093..1031751+

>mRNA_3705 ID=mRNA_3705|Name=jgi.p|Nanoce1779_2|637959|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_6:1031093..1031751+ (Nannochloropsis oceanica)
ATGCCACCTCCTGCCCCTGTCGCCACCTCGGCAGTCACCACCGCCGTCCT
CCAGCTGTATCGTCGCATTATCAAGAATGCCAAGGTCTTTCCCAGCAAAG
GGCGTGACCGCATGGTCAAGGAAATCCGAGAGGAGTTCCGCGTCAACGCC
AAAGAAACTGATCCCGATAAGATCCGGAACCATCGCAGCATGGCCATCAA
AGGCCTTAGTCAGCTACAAGCCTACACAGGATTGGTGGACACAGACATGG
ACTGGTCCGTTACCATGGAGCCCGCACCGTTAGGAGGGCTATCGGAGGAA
AAGGTAGAGGAGAAGCTAAAGCGTGTGTCTAAGGCGACAGTCAGCTCCGG
GAGAGAAGAGAAGGGGGTGGGTGGGAAGGGGCTGGAGGAAGAGGGAAAGA
GATGAATGCCACCTCCTGCCCCTGTCGCCACCTCGGCAGTCACCACCGCC
GTCCTCCAGCTGTATCGTCGCATTATCAAGAATGCCAAGGTCTTTCCCAG
CAAAGGGCGTGACCGCATGGTCAAGGAAATCCGAGAGGAGTTCCGCGTCA
ACGCCAAAGAAACTGATCCCGATAAGATCCGGAACCATCGCAGCATGGCC
ATCAAAGGCCTTAGTCAGCTACAAGCCTACACAGGATTGGTGGACACAGA
CATGGACTGGTCCGTTACCATGGAGCCCGCACCGTTAGGAGGGCTATCGG
AGGAAAAGGTAGAGGAGAAGCTAAAGCGTGTGTCTAAGGCGACAGTCAGC
TCCGGGAGAGAAGAGAAGGGGGTGGGTGGGAAGGGGCTGGAGGAAGAGGG
AAAGAGATGA
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Synonyms
Publications